jgi.p|Nanoce1779_2|587962, mRNA_4808 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587962
Unique NamemRNA_4808
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1882
Alignment locationscaffold_9:670086..672148 -

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Properties
Property NameValue
TranscriptId588048
TrackFilteredModels2
ProteinId587962
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:670086..672148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587962gene_4808Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587962mRNA_4808-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4808CDS_4808Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4808 ID=mRNA_4808|Name=jgi.p|Nanoce1779_2|587962|organism=Nannochloropsis oceanica|type=mRNA|length=1882bp
GGGACGGCGGCCAAGGCGGCAGGGAAGAAGACGAAGGGGAGCAGGGGGGC
AAGCGGGGGGGGGGAATAGCGTGGGAGGAGGAGGGGGAGGGAAGGTGGCG
GCGGACACGCAGAAGATGCGAAATCGGGAGCATGCTAGAAACACGCGGCT
GCGGAAGAAGGCGTATCTGGAAACGCTGCGGCATCAGCTGCAGTCTCTGA
GTGATGCAAAGGACAAGTGGGATAAGACCCGAGAAGTGTCCCAAGCACAG
ACGGTGGAGAACAGCACGATGAAGAAGCAGATGCTGCAGACATTCTTGCT
TTACCGTGCGAGGGGGGAGTTGAACCGGAGGAAATGGGCGGCCTTACTCA
CCGAGGATTTCGTCATGAAGCTCCCCGTTACCCCCTACCGATATTTCCCG
GCAGGGGACGTGGAGCAGCAGACGCGTTACGTGAGGGGTATCGACTCCAC
GATTCGGGATACGGCGAGCTTTACCGTGTTGATTGACTCTTTGTCGCGGA
CGTACAGAGAGCGGGTGCGGGTGCAGTTTTACGCCGAGTCCCAATACATC
ATCATGGCGGCCGGGCCAAGGTTGATGTGTCGGTGGACGATGAAGAGCGA
GAATGCTGTGGCTTGCGGGTGCCAGATGGAGCTGGGGTTATGCGGGATGC
TACAAGCAGAATTCACACCCGTGGAGACGAAGCTTCGGCGGTTGTCGGTG
GTGTTTGATGTGATGGGGTTCATGCAGCAATTGCGGCGGGTGTGTGGAGG
GCAGCTGTTTCAGACCGCGCCAAGCACGCTGCAGATGGCGGAGGACCCGA
CGGAGGAGCCGCGGATCGTGTTTGCCTTGCAAGCACCCTTTAGGATTCGA
AGCATCAATGAAGCTTGGATGATGCATTACGGTGTGACGGTGGAAGACTG
CCAGAACCGGTGCATGGTCCTGGAGCGCAACCCTTTGTGTCCGTTACCGG
CGTTGCCCGCAGGGGGAGCAGAAGGAGGGGGGGAGGCGAAACCACCAGTG
GATTCGGCATTGCAGTACATACAGTTTGCGTATGAGTGTGTGGCGAAACA
ATTGTCGCATTCGTTGGTAGTACTTTACCAGACCAAAACCCAAGGGGCGA
TAGGCGCAAGGCTACGTTTGTTCCCCGTGTATTCGGGGGGGTATGTGACG
CACTATATGGGAGGGCTGACTAGCCTCAGGGATCCGAGCTTCCCAACTGA
TTATCCAACTGTCTTGGCCTTCAGATAAGAGGAGGGTGGAGGGAAGGCAG
GAAAGATGGAAGCGGGTTTCAAAGGGCAGGTTGGCGAGGTGGAGGACATG
TAAAGACCGCCTCAGTCACCCACACACGCCCACGAGCCCAATGACTAGAA
AGTGGAAGGAAGAATGGGTGGAATGGAAATAGGGGGAGGAGGAGGAGGAA
TAGTCAACAACTTCATGATCTACATGTACACGATAAGCCATATTAGTACC
AAGTGGGAGAGACACGAGTATTATCAAATTGGAAAGAGAAGAAATACTAG
CCTCTGTCGGAAGTGTGTGTGTGTGCGGCAGAGATTGCTTGATCAGCACT
ATCAAACTCGGAGCGACCACAACAATAACAAGAAGAACAAGCATAACACA
CAAATAATGGATGAAATACGACGAATTAGAATCAAGAGGAGTCGTTAGAA
TAGTTTAAATATAGTTACAATTACAATGGAGAAGAGGAGGAGGCAAAGTC
AATAACCAAGAAGAACGAGAAAAAGAGAAAGAAGGAAATAAGAAGAAGCG
GGAGAAGAAGACTGTGGCTGGCACCGATGACAATTGAGGGGCACGGGGCA
TTACGAACGAGAGAATGCTTTACTTGACAACAAGAAGCTTTCATAGAAAC
ATGGAAAGAAACACCAACATGGCTCGCACCTA
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protein sequence of jgi.p|Nanoce1779_2|587962

>mRNA_4808-protein ID=mRNA_4808-protein|Name=jgi.p|Nanoce1779_2|587962|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MRNREHARNTRLRKKAYLETLRHQLQSLSDAKDKWDKTREVSQAQTVENS
TMKKQMLQTFLLYRARGELNRRKWAALLTEDFVMKLPVTPYRYFPAGDVE
QQTRYVRGIDSTIRDTASFTVLIDSLSRTYRERVRVQFYAESQYIIMAAG
PRLMCRWTMKSENAVACGCQMELGLCGMLQAEFTPVETKLRRLSVVFDVM
GFMQQLRRVCGGQLFQTAPSTLQMAEDPTEEPRIVFALQAPFRIRSINEA
WMMHYGVTVEDCQNRCMVLERNPLCPLPALPAGGAEGGGEAKPPVDSALQ
YIQFAYECVAKQLSHSLVVLYQTKTQGAIGARLRLFPVYSGGYVTHYMGG
LTSLRDPSFPTDYPTVLAFR*
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mRNA from alignment at scaffold_9:670086..672148-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4808 ID=mRNA_4808|Name=jgi.p|Nanoce1779_2|587962|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp|location=Sequence derived from alignment at scaffold_9:670086..672148- (Nannochloropsis oceanica)
GGGACGGCGGCCAAGGCGGCAGGGAAGAAGACGAAGGGGAGCAGGGGGGC
AAGCGGGGGGGGGGAATAGCGTGGGAGGAGGAGGGGGAGGGAAGGTGGCG
GCGGACACGCAGAAGATGCGAAATCGGGAGCATGCTAGAAACACGCGGCT
GCGGAAGAAGGCGTATCTGGAAACGCTGCGGCATCAGCTGCAGTCTCTGA
GTGATGCAAAGGACAAGTGGGATAAGACCCGAGAAGTGTCCCAAGCACAG
ACGGTGGAGAACAGCACGATGAAGAAGCAGATGCTGCAGACATTCTTGCT
TTACCGTGCGAGGGGGGAGTTGAACCGGAGGAAATGGGCGGCCTTACTCA
CCGAGGATTTCGTCATGAAGCTCCCCGTTACCCCCTACCGATATTTCCCG
GCAGGGGACGTGGAGCAGCAGACGCGTTACGTGAGGGGTATCGACTCCAC
GATTCGGGATACGGCGAGCTTTACCGTGTTGATTGACTCTTTGTCGCGGA
CGTACAGAGAGCGGGTGCGGGTGCAGTTTTACGCCGAGTCCCAATACATC
ATCATGGCGGCCGGGCCAAGGTTGATGTGTCGGTGGACGATGAAGAGCGA
GAATGCTGTGGCTTGCGGGTGCCAGATGGAGCTGGGGTTATGCGGGATGC
TACAAGCAGAATTCACACCCGTGGAGACGAAGCTTCGGCGGTTGTCGGTG
GTGTTTGATGTGATGGGGTTCATGCAGCAATTGCGGCGGGTGTGTGGAGG
GCAGCTGTTTCAGACCGCGCCAAGCACGCTGCAGATGGCGGAGGACCCGA
CGGAGGAGCCGCGGATCGTGTTTGCCTTGCAAGCACCCTTTAGGATTCGA
AGCATCAATGAAGCTTGGATGATGCATTACGGTGTGACGGTGGAAGACTG
CCAGAACCGGTGCATGGTCCTGGAGCGCAACCCTTTGTGTCCGTTACCGG
CGTTGCCCGCAGGGGGAGCAGAAGGAGGGGGGGAGGCGAAACCACCAGTG
GATTCGGCATTGCAGTACATACAGTTTGCGTATGAGTGTGTGGCGAAACA
ATTGTCGCATTCGTTGGTAGTACTTTACCAGACCAAAACCCAAGGGGCGA
TAGGTACGTATCCGCTCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCTT
CCCTCCCTCCTTCCCACATTCCCTCTCCATCCTTCCTACCACGTTATTAT
TTTCCATGATTCCGCCCTTGTTCTGACGTCCCTCGCTTCCCCGCTTTCTC
TCTCTTTTCCCTCCTCCTTCCCTTTCTCGCCCAGGCGCAAGGCTACGTTT
GTTCCCCGTGTATTCGGGGGGGTATGTGACGCACTATATGGGAGGGCTGA
CTAGCCTCAGGGATCCGAGCTTCCCAACTGATTATCCAACTGTCTTGGCC
TTCAGATAAGAGGAGGGTGGAGGGAAGGCAGGAAAGATGGAAGCGGGTTT
CAAAGGGCAGGTTGGCGAGGTGGAGGACATGTAAAGACCGCCTCAGTCAC
CCACACACGCCCACGAGCCCAATGACTAGAAAGTGGAAGGAAGAATGGGT
GGAATGGAAATAGGGGGAGGAGGAGGAGGAATAGTCAACAACTTCATGAT
CTACATGTACACGATAAGCCATATTAGTACCAAGTGGGAGAGACACGAGT
ATTATCAAATTGGAAAGAGAAGAAATACTAGCCTCTGTCGGAAGTGTGTG
TGTGTGCGGCAGAGATTGCTTGATCAGCACTATCAAACTCGGAGCGACCA
CAACAATAACAAGAAGAACAAGCATAACACACAAATAATGGATGAAATAC
GACGAATTAGAATCAAGAGGAGTCGTTAGAATAGTTTAAATATAGTTACA
ATTACAATGGAGAAGAGGAGGAGGCAAAGTCAATAACCAAGAAGAACGAG
AAAAAGAGAAAGAAGGAAATAAGAAGAAGCGGGAGAAGAAGACTGTGGCT
GGCACCGATGACAATTGAGGGGCACGGGGCATTACGAACGAGAGAATGCT
TTACTTGACAACAAGAAGCTTTCATAGAAACATGGAAAGAAACACCAACA
TGGCTCGCACCTA
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Coding sequence (CDS) from alignment at scaffold_9:670086..672148-

>mRNA_4808 ID=mRNA_4808|Name=jgi.p|Nanoce1779_2|587962|organism=Nannochloropsis oceanica|type=CDS|length=2226bp|location=Sequence derived from alignment at scaffold_9:670086..672148- (Nannochloropsis oceanica)
GCGCAAGGCTACGTTTGTTCCCCGTGTATTCGGGGGGGTATGTGACGCAC
TATATGGGAGGGCTGACTAGCCTCAGGGATCCGAGCTTCCCAACTGATTA
TCCAACTGTCTTGGCCTTCAGATAAATGCGAAATCGGGAGCATGCTAGAA
ACACGCGGCTGCGGAAGAAGGCGTATCTGGAAACGCTGCGGCATCAGCTG
CAGTCTCTGAGTGATGCAAAGGACAAGTGGGATAAGACCCGAGAAGTGTC
CCAAGCACAGACGGTGGAGAACAGCACGATGAAGAAGCAGATGCTGCAGA
CATTCTTGCTTTACCGTGCGAGGGGGGAGTTGAACCGGAGGAAATGGGCG
GCCTTACTCACCGAGGATTTCGTCATGAAGCTCCCCGTTACCCCCTACCG
ATATTTCCCGGCAGGGGACGTGGAGCAGCAGACGCGTTACGTGAGGGGTA
TCGACTCCACGATTCGGGATACGGCGAGCTTTACCGTGTTGATTGACTCT
TTGTCGCGGACGTACAGAGAGCGGGTGCGGGTGCAGTTTTACGCCGAGTC
CCAATACATCATCATGGCGGCCGGGCCAAGGTTGATGTGTCGGTGGACGA
TGAAGAGCGAGAATGCTGTGGCTTGCGGGTGCCAGATGGAGCTGGGGTTA
TGCGGGATGCTACAAGCAGAATTCACACCCGTGGAGACGAAGCTTCGGCG
GTTGTCGGTGGTGTTTGATGTGATGGGGTTCATGCAGCAATTGCGGCGGG
TGTGTGGAGGGCAGCTGTTTCAGACCGCGCCAAGCACGCTGCAGATGGCG
GAGGACCCGACGGAGGAGCCGCGGATCGTGTTTGCCTTGCAAGCACCCTT
TAGGATTCGAAGCATCAATGAAGCTTGGATGATGCATTACGGTGTGACGG
TGGAAGACTGCCAGAACCGGTGCATGGTCCTGGAGCGCAACCCTTTGTGT
CCGTTACCGGCGTTGCCCGCAGGGGGAGCAGAAGGAGGGGGGGAGGCGAA
ACCACCAGTGGATTCGGCATTGCAGTACATACAGTTTGCGTATGAGTGTG
TGGCGAAACAATTGTCGCATTCGTTGGTAGTACTTTACCAGACCAAAACC
CAAGGGGCGATAGGCGCAAGGCTACGTTTGTTCCCCGTGTATTCGGGGGG
GTATGTGACGCACTATATGGGAGGGCTGACTAGCCTCAGGGATCCGAGCT
TCCCAACTGATTATCCAACTGTCTTGGCCTTCAGATAAATGCGAAATCGG
GAGCATGCTAGAAACACGCGGCTGCGGAAGAAGGCGTATCTGGAAACGCT
GCGGCATCAGCTGCAGTCTCTGAGTGATGCAAAGGACAAGTGGGATAAGA
CCCGAGAAGTGTCCCAAGCACAGACGGTGGAGAACAGCACGATGAAGAAG
CAGATGCTGCAGACATTCTTGCTTTACCGTGCGAGGGGGGAGTTGAACCG
GAGGAAATGGGCGGCCTTACTCACCGAGGATTTCGTCATGAAGCTCCCCG
TTACCCCCTACCGATATTTCCCGGCAGGGGACGTGGAGCAGCAGACGCGT
TACGTGAGGGGTATCGACTCCACGATTCGGGATACGGCGAGCTTTACCGT
GTTGATTGACTCTTTGTCGCGGACGTACAGAGAGCGGGTGCGGGTGCAGT
TTTACGCCGAGTCCCAATACATCATCATGGCGGCCGGGCCAAGGTTGATG
TGTCGGTGGACGATGAAGAGCGAGAATGCTGTGGCTTGCGGGTGCCAGAT
GGAGCTGGGGTTATGCGGGATGCTACAAGCAGAATTCACACCCGTGGAGA
CGAAGCTTCGGCGGTTGTCGGTGGTGTTTGATGTGATGGGGTTCATGCAG
CAATTGCGGCGGGTGTGTGGAGGGCAGCTGTTTCAGACCGCGCCAAGCAC
GCTGCAGATGGCGGAGGACCCGACGGAGGAGCCGCGGATCGTGTTTGCCT
TGCAAGCACCCTTTAGGATTCGAAGCATCAATGAAGCTTGGATGATGCAT
TACGGTGTGACGGTGGAAGACTGCCAGAACCGGTGCATGGTCCTGGAGCG
CAACCCTTTGTGTCCGTTACCGGCGTTGCCCGCAGGGGGAGCAGAAGGAG
GGGGGGAGGCGAAACCACCAGTGGATTCGGCATTGCAGTACATACAGTTT
GCGTATGAGTGTGTGGCGAAACAATTGTCGCATTCGTTGGTAGTACTTTA
CCAGACCAAAACCCAAGGGGCGATAG
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Synonyms
Publications