jgi.p|Nanoce1779_2|443787, mRNA_4807 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|443787
Unique NamemRNA_4807
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length501
Alignment locationscaffold_9:670195..670695 +

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Properties
Property NameValue
TranscriptId443873
TrackFilteredModels2
ProteinId443787
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:670195..670695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|443787gene_4807Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|443787mRNA_4807-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4807CDS_4807Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4807 ID=mRNA_4807|Name=jgi.p|Nanoce1779_2|443787|organism=Nannochloropsis oceanica|type=mRNA|length=501bp
TGCCAGCCACAGTCTTCTTCTCCCGCTTCTTCTTATTTCCTTCTTTCTCT
TTTTCTCGTTCTTCTTGGTTATTGACTTTGCCTCCTCCTCTTCTCCATTG
TAATTGTAACTATATTTAAACTATTCTAACGACTCCTCTTGATTCTAATT
CGTCGTATTTCATCCATTATTTGTGTGTTATGCTTGTTCTTCTTGTTATT
GTTGTGGTCGCTCCGAGTTTGATAGTGCTGATCAAGCAATCTCTGCCGCA
CACACACACACTTCCGACAGAGGCTAGTATTTCTTCTCTTTCCAATTTGA
TAATACTCGTGTCTCTCCCACTTGGTACTAATATGGCTTATCGTGTACAT
GTAGATCATGAAGTTGTTGACTATTCCTCCTCCTCCTCCCCCTATTTCCA
TTCCACCCATTCTTCCTTCCACTTTCTAGTCATTGGGCTCGTGGGCGTGT
GTGGGTGACTGAGGCGGTCTTTACATGTCCTCCACCTCGCCAACCTGCCC
T
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protein sequence of jgi.p|Nanoce1779_2|443787

>mRNA_4807-protein ID=mRNA_4807-protein|Name=jgi.p|Nanoce1779_2|443787|organism=Nannochloropsis oceanica|type=polypeptide|length=93bp
MLVLLVIVVVAPSLIVLIKQSLPHTHTLPTEASISSLSNLIILVSLPLGT
NMAYRVHVDHEVVDYSSSSSPYFHSTHSSFHFLVIGLVGVCG*
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mRNA from alignment at scaffold_9:670195..670695+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4807 ID=mRNA_4807|Name=jgi.p|Nanoce1779_2|443787|organism=Nannochloropsis oceanica|type=mRNA|length=501bp|location=Sequence derived from alignment at scaffold_9:670195..670695+ (Nannochloropsis oceanica)
TGCCAGCCACAGTCTTCTTCTCCCGCTTCTTCTTATTTCCTTCTTTCTCT
TTTTCTCGTTCTTCTTGGTTATTGACTTTGCCTCCTCCTCTTCTCCATTG
TAATTGTAACTATATTTAAACTATTCTAACGACTCCTCTTGATTCTAATT
CGTCGTATTTCATCCATTATTTGTGTGTTATGCTTGTTCTTCTTGTTATT
GTTGTGGTCGCTCCGAGTTTGATAGTGCTGATCAAGCAATCTCTGCCGCA
CACACACACACTTCCGACAGAGGCTAGTATTTCTTCTCTTTCCAATTTGA
TAATACTCGTGTCTCTCCCACTTGGTACTAATATGGCTTATCGTGTACAT
GTAGATCATGAAGTTGTTGACTATTCCTCCTCCTCCTCCCCCTATTTCCA
TTCCACCCATTCTTCCTTCCACTTTCTAGTCATTGGGCTCGTGGGCGTGT
GTGGGTGACTGAGGCGGTCTTTACATGTCCTCCACCTCGCCAACCTGCCC
T
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Coding sequence (CDS) from alignment at scaffold_9:670195..670695+

>mRNA_4807 ID=mRNA_4807|Name=jgi.p|Nanoce1779_2|443787|organism=Nannochloropsis oceanica|type=CDS|length=279bp|location=Sequence derived from alignment at scaffold_9:670195..670695+ (Nannochloropsis oceanica)
ATGCTTGTTCTTCTTGTTATTGTTGTGGTCGCTCCGAGTTTGATAGTGCT
GATCAAGCAATCTCTGCCGCACACACACACACTTCCGACAGAGGCTAGTA
TTTCTTCTCTTTCCAATTTGATAATACTCGTGTCTCTCCCACTTGGTACT
AATATGGCTTATCGTGTACATGTAGATCATGAAGTTGTTGACTATTCCTC
CTCCTCCTCCCCCTATTTCCATTCCACCCATTCTTCCTTCCACTTTCTAG
TCATTGGGCTCGTGGGCGTGTGTGGGTGA
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Synonyms
Publications