jgi.p|Nanoce1779_2|587959, mRNA_4806 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587959
Unique NamemRNA_4806
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length896
Alignment locationscaffold_9:669085..670085 +

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Properties
Property NameValue
TranscriptId588045
TrackFilteredModels2
ProteinId587959
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:669085..670085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587959gene_4806Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587959mRNA_4806-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4806CDS_4806Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4806 ID=mRNA_4806|Name=jgi.p|Nanoce1779_2|587959|organism=Nannochloropsis oceanica|type=mRNA|length=896bp
GAGAGGCCCCTTAAAAACTCACACAGGCATCCAGCGGCAAGGCAACAACC
GGGACAAGCTCCCCAATCTTCTCTCGCGTTGCGTGGCTGGATGTGGCTGT
CATGGCGTTTGCGAACTTGAAATACAGGCAGTTTATTACAGCGGACTTCG
ACCAACTACGCAACGACTACTGCCATCACACGGCCGTATGTCGACAGGGG
AAGTCTCGGCGGCCTTGGGGCAGTACGAGAATCGTGCCAAGACCCTCCTT
ACTCGCCTTGGGCAACTCGCGGAGCACTTGAGGCAAATTCTGGCTAATCC
ACTGCACGCCCACCCCGACTGGCCCACTATCGTCACGCATTTTCGAGTGA
CAGAAACTCAACTTGAGCAGTTGCATCGGGACGTACAACCCCTCTTGCAG
TACTTTGTCTTGAGGCCGGCGTCGCACCCGTCAAGGCCTCCGCCGCCTCA
TGCAGACATCCCACTTATGTTGTCGACTCGCTCCTACCTCGAGATGGAGG
GTGAAGAGGCACAGCTGCAAGCGACTTATTGGGACAGGATCCAGACGCAG
GCACACGTGAAAGAAGAGGACGAAGAAGATTCGGAGGGAGGGGTGGAAGG
GTTGATAGAGAGAGTGAACGAGGCGGTAGAACGTGTAGGGATAGTGTGCG
ATTGGCGTTTGGCAGAGTTCAAGGAGAGGATGAATGCGTATAAGAGCCCA
GGGCTTAAGGTGCCGGCATGGCGAAAGGATGCGGCGGCAAGGGCGGAGGA
GGCGTTTGCATGGTGTGAAGCCAGGACGGATGGACGGGTGGTACGTCCCT
TACCGGCAGCAGCACCCAGGAGATGAGATGATGGGGGGGGCATTGGGCGA
TAGAATATTGGCTTGTAAAATTTGAGAAGGATATAGAAAAGAGAGA
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protein sequence of jgi.p|Nanoce1779_2|587959

>mRNA_4806-protein ID=mRNA_4806-protein|Name=jgi.p|Nanoce1779_2|587959|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MSTGEVSAALGQYENRAKTLLTRLGQLAEHLRQILANPLHAHPDWPTIVT
HFRVTETQLEQLHRDVQPLLQYFVLRPASHPSRPPPPHADIPLMLSTRSY
LEMEGEEAQLQATYWDRIQTQAHVKEEDEEDSEGGVEGLIERVNEAVERV
GIVCDWRLAEFKERMNAYKSPGLKVPAWRKDAAARAEEAFAWCEARTDGR
VVRPLPAAAPRR*
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mRNA from alignment at scaffold_9:669085..670085+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4806 ID=mRNA_4806|Name=jgi.p|Nanoce1779_2|587959|organism=Nannochloropsis oceanica|type=mRNA|length=1001bp|location=Sequence derived from alignment at scaffold_9:669085..670085+ (Nannochloropsis oceanica)
GAGAGGCCCCTTAAAAACTCACACAGGCATCCAGCGGCAAGGCAACAACC
GGGACAAGCTCCCCAATCTTCTCTCGCGTTGCGTGGCTGGATGTGGCTGT
CATGGCGTTTGGTTAGTATCGTGATTGGGTCCCCGATCATGACGGACGTG
CTCGCCCGTGGCCTGCCTCGAAGTCGTTCTTCACCTCCCTCCTGCCTCTT
ACCCCTATACCGCTAGCGAACTTGAAATACAGGCAGTTTATTACAGCGGA
CTTCGACCAACTACGCAACGACTACTGCCATCACACGGCCGTATGTCGAC
AGGGGAAGTCTCGGCGGCCTTGGGGCAGTACGAGAATCGTGCCAAGACCC
TCCTTACTCGCCTTGGGCAACTCGCGGAGCACTTGAGGCAAATTCTGGCT
AATCCACTGCACGCCCACCCCGACTGGCCCACTATCGTCACGCATTTTCG
AGTGACAGAAACTCAACTTGAGCAGTTGCATCGGGACGTACAACCCCTCT
TGCAGTACTTTGTCTTGAGGCCGGCGTCGCACCCGTCAAGGCCTCCGCCG
CCTCATGCAGACATCCCACTTATGTTGTCGACTCGCTCCTACCTCGAGAT
GGAGGGTGAAGAGGCACAGCTGCAAGCGACTTATTGGGACAGGATCCAGA
CGCAGGCACACGTGAAAGAAGAGGACGAAGAAGATTCGGAGGGAGGGGTG
GAAGGGTTGATAGAGAGAGTGAACGAGGCGGTAGAACGTGTAGGGATAGT
GTGCGATTGGCGTTTGGCAGAGTTCAAGGAGAGGATGAATGCGTATAAGA
GCCCAGGGCTTAAGGTGCCGGCATGGCGAAAGGATGCGGCGGCAAGGGCG
GAGGAGGCGTTTGCATGGTGTGAAGCCAGGACGGATGGACGGGTGGTACG
TCCCTTACCGGCAGCAGCACCCAGGAGATGAGATGATGGGGGGGGCATTG
GGCGATAGAATATTGGCTTGTAAAATTTGAGAAGGATATAGAAAAGAGAG
A
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Coding sequence (CDS) from alignment at scaffold_9:669085..670085+

>mRNA_4806 ID=mRNA_4806|Name=jgi.p|Nanoce1779_2|587959|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_9:669085..670085+ (Nannochloropsis oceanica)
ATGTCGACAGGGGAAGTCTCGGCGGCCTTGGGGCAGTACGAGAATCGTGC
CAAGACCCTCCTTACTCGCCTTGGGCAACTCGCGGAGCACTTGAGGCAAA
TTCTGGCTAATCCACTGCACGCCCACCCCGACTGGCCCACTATCGTCACG
CATTTTCGAGTGACAGAAACTCAACTTGAGCAGTTGCATCGGGACGTACA
ACCCCTCTTGCAGTACTTTGTCTTGAGGCCGGCGTCGCACCCGTCAAGGC
CTCCGCCGCCTCATGCAGACATCCCACTTATGTTGTCGACTCGCTCCTAC
CTCGAGATGGAGGGTGAAGAGGCACAGCTGCAAGCGACTTATTGGGACAG
GATCCAGACGCAGGCACACGTGAAAGAAGAGGACGAAGAAGATTCGGAGG
GAGGGGTGGAAGGGTTGATAGAGAGAGTGAACGAGGCGGTAGAACGTGTA
GGGATAGTGTGCGATTGGCGTTTGGCAGAGTTCAAGGAGAGGATGAATGC
GTATAAGAGCCCAGGGCTTAAGGTGCCGGCATGGCGAAAGGATGCGGCGG
CAAGGGCGGAGGAGGCGTTTGCATGGTGTGAAGCCAGGACGGATGGACGG
GTGGTACGTCCCTTACCGGCAGCAGCACCCAGGAGATGA
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Synonyms
Publications