jgi.p|Nanoce1779_2|587948, mRNA_4804 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587948
Unique NamemRNA_4804
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length516
Alignment locationscaffold_9:661531..662697 +

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Properties
Property NameValue
TranscriptId588034
TrackFilteredModels2
ProteinId587948
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:661531..662697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587948gene_4804Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587948mRNA_4804-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4804CDS_4804Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4804 ID=mRNA_4804|Name=jgi.p|Nanoce1779_2|587948|organism=Nannochloropsis oceanica|type=mRNA|length=516bp
ACAGGACTCTTCTGTGGTATAGCTAGGAGGCAGCAGCTTTAGCAATGGCA
CCAACGAAGGTCGGTGCGAAGGGCAAGAAAGGTGGAAAGAAGAACCTGGT
CAAGTACACCATCGACTGCAACCAGCCGGTGGACGATAAGGTGCTAGACA
TGGGTACCTTCGAGAAGTTCCTTAAGGACCGGATCAAGGTGAACGGCAAG
GCCGGCGTGCTGGGGGACTCCGTCACGGTGGGGCGAGACAAGAGCAAGAT
CCAAGTTACGGCTGAGCTGCCTTTTTCCAAGCGATACCTTAAGTACCTCA
CCAAGAAGCACCTGAAGAAGCAGCAGCTCCGAGACTACCTGCACGTTGTG
GCGACGAACAAGCAGACGTACGAGTTGAAGTACTTCTCCGTGCAGGACGA
AGGGGGGGACGATGACGAGTAGACCAGGACGGCAGTCTTAGTGGGAGGGT
GCTTGATGGAGGAGGAAATGGGCAGGGAGGGAGGGAGGGAGGGAGGATTT
GGGGATGAAGAATGGT
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protein sequence of jgi.p|Nanoce1779_2|587948

>mRNA_4804-protein ID=mRNA_4804-protein|Name=jgi.p|Nanoce1779_2|587948|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MAPTKVGAKGKKGGKKNLVKYTIDCNQPVDDKVLDMGTFEKFLKDRIKVN
GKAGVLGDSVTVGRDKSKIQVTAELPFSKRYLKYLTKKHLKKQQLRDYLH
VVATNKQTYELKYFSVQDEGGDDDE*
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mRNA from alignment at scaffold_9:661531..662697+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4804 ID=mRNA_4804|Name=jgi.p|Nanoce1779_2|587948|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp|location=Sequence derived from alignment at scaffold_9:661531..662697+ (Nannochloropsis oceanica)
ACAGGACTCTTCTGTGGTATAGCTAGGAGGCAGCAGCTTTAGCAATGGCA
CCAACGGTGAGTGGGTAGGGTGTGGCGGCGGGACGGGGGGCGATGGTGTG
GAGATGATGATGATGCCTGATGAAGACTGAACAGTATCGAGAAAATCCTG
CCAAACGCAAAAGTGTGCGACTTGACACATCAGAGCTCTGTCTAGTAGAT
GGCATGGCACCGCTTGTGGTGAGGGCGAATGCTGCTGTTCCGGAACGACC
TCTCGTTGCCCGCCTGATGGATTTGTATGTGCAGCAATGCAGAGAGGGAG
ACTCCATGGCCGATATCGCGTGGGTGAAATACCTCAGAGCGTGCATCTTT
ATTTTATCTCTCCCTCGGCTTTATCCTGTGCCCCTCCTTTATTTGAGGCG
AACTTATTTCCCTTCCTTTTCCCCCCTACGGGATTTCAGAAGAGAGGTGT
TGTTTTTGTTTGTCATGTTTTCAAACATCATCATCTCTTTCCTTCCCCCC
AATGTCAACGTCTCCTTTGACACGTCTCACCCACCGCCATCACTCTCTCC
CTCCCCCTCCCTCTTCCAGAAGGTCGGTGCGAAGGGCAAGAAAGGTGGAA
AGAAGAACCTGGTCAAGTACACCATCGACTGCAACCAGCCGGTGGACGAT
AAGGTGCTAGACATGGGTACCTTCGAGAAGTTCCTTAAGGACCGGATCAA
GGTATGCTGAATCCTCCCTCTATCCTTTTTCTTTTGTCGGCCTTGAACAA
AGACTGTTTCAAGGGGAATGCAGCAGTAGTCTTCATTACAACCAATTTGC
TTACTCCTTTTCTCGTATTCTTTTCCCTCTCTACACTAGGTGAACGGCAA
GGCCGGCGTGCTGGGGGACTCCGTCACGGTGGGGCGAGACAAGAGCAAGA
TCCAAGTTACGGCTGAGCTGCCTTTTTCCAAGCGATACCTTAAGTACCTC
ACCAAGAAGCACCTGAAGAAGCAGCAGCTCCGAGACTACCTGCACGTTGT
GGCGACGAACAAGCAGACGTACGAGTTGAAGTACTTCTCCGTGCAGGACG
AAGGGGGGGACGATGACGAGTAGACCAGGACGGCAGTCTTAGTGGGAGGG
TGCTTGATGGAGGAGGAAATGGGCAGGGAGGGAGGGAGGGAGGGAGGATT
TGGGGATGAAGAATGGT
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Coding sequence (CDS) from alignment at scaffold_9:661531..662697+

>mRNA_4804 ID=mRNA_4804|Name=jgi.p|Nanoce1779_2|587948|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_9:661531..662697+ (Nannochloropsis oceanica)
ATGGCACCAACGAAGGTCGGTGCGAAGGGCAAGAAAGGTGGAAAGAAGAA
CCTGGTCAAGTACACCATCGACTGCAACCAGCCGGTGGACGATAAGGTGC
TAGACATGGGTACCTTCGAGAAGTTCCTTAAGGACCGGATCAAGGTGAAC
GGCAAGGCCGGCGTGCTGGGGGACTCCGTCACGGTGGGGCGAGACAAGAG
CAAGATCCAAGTTACGGCTGAGCTGCCTTTTTCCAAGCGATACCTTAAGT
ACCTCACCAAGAAGCACCTGAAGAAGCAGCAGCTCCGAGACTACCTGCAC
GTTGTGGCGACGAACAAGCAGACGTACGAGTTGAAGTACTTCTCCGTGCA
GGACGAAGGGGGGGACGATGACGAGTAGATGGCACCAACGAAGGTCGGTG
CGAAGGGCAAGAAAGGTGGAAAGAAGAACCTGGTCAAGTACACCATCGAC
TGCAACCAGCCGGTGGACGATAAGGTGCTAGACATGGGTACCTTCGAGAA
GTTCCTTAAGGACCGGATCAAGGTGAACGGCAAGGCCGGCGTGCTGGGGG
ACTCCGTCACGGTGGGGCGAGACAAGAGCAAGATCCAAGTTACGGCTGAG
CTGCCTTTTTCCAAGCGATACCTTAAGTACCTCACCAAGAAGCACCTGAA
GAAGCAGCAGCTCCGAGACTACCTGCACGTTGTGGCGACGAACAAGCAGA
CGTACGAGTTGAAGTACTTCTCCGTGCAGGACGAAGGGGGGGACGATGAC
GAGTAGATGGCACCAACGAAGGTCGGTGCGAAGGGCAAGAAAGGTGGAAA
GAAGAACCTGGTCAAGTACACCATCGACTGCAACCAGCCGGTGGACGATA
AGGTGCTAGACATGGGTACCTTCGAGAAGTTCCTTAAGGACCGGATCAAG
GTGAACGGCAAGGCCGGCGTGCTGGGGGACTCCGTCACGGTGGGGCGAGA
CAAGAGCAAGATCCAAGTTACGGCTGAGCTGCCTTTTTCCAAGCGATACC
TTAAGTACCTCACCAAGAAGCACCTGAAGAAGCAGCAGCTCCGAGACTAC
CTGCACGTTGTGGCGACGAACAAGCAGACGTACGAGTTGAAGTACTTCTC
CGTGCAGGACGAAGGGGGGGACGATGACGAGTAG
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Synonyms
Publications