jgi.p|Nanoce1779_2|443465, mRNA_4803 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|443465
Unique NamemRNA_4803
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length734
Alignment locationscaffold_9:659603..660803 -

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Properties
Property NameValue
TranscriptId443551
TrackFilteredModels2
ProteinId443465
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:659603..660803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|443465gene_4803Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|443465mRNA_4803-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4803CDS_4803Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4803 ID=mRNA_4803|Name=jgi.p|Nanoce1779_2|443465|organism=Nannochloropsis oceanica|type=mRNA|length=734bp
CAGATCCAAAAAAAGCAGCGGCAGCAGCCGGGGTGACGCGGGCGCAAGTC
AAGGAATCTCCGCATCTGCGTTGCACCCACTGCGTAACCACACTACCACG
CCACCATGACGGCCGCCACTAGCTCCTTATGGCTGGTCGCCTCGAACATT
CAGTTTCATGACGATACGGCGCTGCCCGTGGGTAGTAGCACCAGCCTGTT
CGCCCCTCCTTCCTCTTCCTCCTCTTCCTCCTCTCCTCCCTCTTCCTCCG
CCACTGGCACATCCACCACCACTGCCGCAGACGGTCAAGCTGAAGATGGG
GACACACTCGAGCCTCAGGACGATGTATTCTACCTGAGCCGTCTGAATGA
CCCGACCACATACTTTTTCCAATGGATCTGCAAGCGGTATCGACTTACCG
TCAAGCCCGAGCCCCATTCCTGCCCCATTTGCTTGGAAACTTCGGACCAC
CACATCCAGTTATCGTGCGGCCACACTTTTTGCCGGCAATGCCTCAAAGC
TGCCGCGGAGTGCAACATGTCCTCATGTGCCTTGTGTCGCAAAAGTCACA
CCCTGGATCCAGACGTATTGCGTGCGCAGTTTCAGACGCAACGGTTCGCG
AATTTGAGCTGGCGGTTGGGCAAGACAAGGGCGACCCCTGTCTTTTCGAA
ACCGAGTTGGGAGGTGGGTTGATTTGATGGGAGGAAGGGATGTAGGGATG
GCGGTGTTGCCTGCAGAGGTAGGGGCAGCACGGG
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protein sequence of jgi.p|Nanoce1779_2|443465

>mRNA_4803-protein ID=mRNA_4803-protein|Name=jgi.p|Nanoce1779_2|443465|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MTAATSSLWLVASNIQFHDDTALPVGSSTSLFAPPSSSSSSSSPPSSSAT
GTSTTTAADGQAEDGDTLEPQDDVFYLSRLNDPTTYFFQWICKRYRLTVK
PEPHSCPICLETSDHHIQLSCGHTFCRQCLKAAAECNMSSCALCRKSHTL
DPDVLRAQFQTQRFANLSWRLGKTRATPVFSKPSWEVG*
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mRNA from alignment at scaffold_9:659603..660803-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4803 ID=mRNA_4803|Name=jgi.p|Nanoce1779_2|443465|organism=Nannochloropsis oceanica|type=mRNA|length=1201bp|location=Sequence derived from alignment at scaffold_9:659603..660803- (Nannochloropsis oceanica)
CAGATCCAAAAAAAGCAGCGGCAGCAGCCGGGGTGACGCGGGCGCAAGTC
AAGGAATCTCCGCATCTGCGTTGCACCCACTGCGTAACCACACTACCACG
CCACCATGACGGCCGCCACTAGCTCCTTATGGCTGGTCGCCTCGAACATT
CAGTTTCATGACGATACGGCGCTGCCCGTGGGTAGTAGCACCAGCCTGTT
CGCCCCTCCTTCCTCTTCCTCCTCTTCCTCCTCTCCTCCCTCTTCCTCCG
CCACTGGCACATCCACCACCACTGCCGCAGACGGTCAAGCTGAAGATGGG
GACACACTCGAGCCTCAGGACGATGTATTCTACCTGAGCCGTCTGAATGA
CCCGACCACATACTTTTTCCAATGGATCTGCAAGCGGTATCGACTTACCG
TCAAGCCCGAGCCCCATTCCTGCCCCATTTGCTTGGAAACTTCGGACCAC
CACATCCAGTTATCGTGCGGTACGTGGGATGACATGTATTCGGAGGGAAG
AAGGGGTTGATAGGCATGTTTATGATAATGCTGAATACCTTGAATCTTGT
CGGTGGGAGTGTCGTCCTGCTGATTCTTGTCCCCCCCCCCTTTTCCCCTC
CGCATCACAGGCCACACTTTTTGCCGGCAATGCCTCAAAGCTGCCGCGGA
GTGCAACATGTCCTCATGTGCCTTGTGTCGCAAAAGTCACACCCTGGATC
CAGACGTATTGCGTGCGCAGTTTCAGACGCAACGGTTCGCGAATTTGAGC
TGGCGGTTGGGCAAGACAAGGGCGACCCCTGTCTTTTCGAAACCGAGTTG
GGAGGTGTTGTTTTCAGGAGGAGTGGGAGATGCAGGGATAGGGGGGGAGA
AGTGTGGTGGTTGCTCTGGTGCGGGGGGGGAGCGGCGGGCGCCTACCCCG
CCGTTTTGTGAGGTCGAGGAGGAAGCAGCCACAGTAGCAGCAGCAGCTGC
GGTGGTGGCGGAGCAGGATGGGAAGAAGGGAGGGAAGAAGGGAGGAAGGT
ATGTGGGACCGGACATTGGTGCGTTGCCCCGAAGGTTGTTAATGCGGAGA
GCGGCCAAAAGTGTGAAGCGGGCGTTTGTAACAAGAGATCCGGATGTCGG
AGCAGCCGCGGCCGCAAAGCTCAAGGGGAGGTGGGTTGATTTGATGGGAG
GAAGGGATGTAGGGATGGCGGTGTTGCCTGCAGAGGTAGGGGCAGCACGG
G
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Coding sequence (CDS) from alignment at scaffold_9:659603..660803-

>mRNA_4803 ID=mRNA_4803|Name=jgi.p|Nanoce1779_2|443465|organism=Nannochloropsis oceanica|type=CDS|length=1701bp|location=Sequence derived from alignment at scaffold_9:659603..660803- (Nannochloropsis oceanica)
GTGGGTTGAGCCACACTTTTTGCCGGCAATGCCTCAAAGCTGCCGCGGAG
TGCAACATGTCCTCATGTGCCTTGTGTCGCAAAAGTCACACCCTGGATCC
AGACGTATTGCGTGCGCAGTTTCAGACGCAACGGTTCGCGAATTTGAGCT
GGCGGTTGGGCAAGACAAGGGCGACCCCTGTCTTTTCGAAACCGAGTTGG
GAGATGACGGCCGCCACTAGCTCCTTATGGCTGGTCGCCTCGAACATTCA
GTTTCATGACGATACGGCGCTGCCCGTGGGTAGTAGCACCAGCCTGTTCG
CCCCTCCTTCCTCTTCCTCCTCTTCCTCCTCTCCTCCCTCTTCCTCCGCC
ACTGGCACATCCACCACCACTGCCGCAGACGGTCAAGCTGAAGATGGGGA
CACACTCGAGCCTCAGGACGATGTATTCTACCTGAGCCGTCTGAATGACC
CGACCACATACTTTTTCCAATGGATCTGCAAGCGGTATCGACTTACCGTC
AAGCCCGAGCCCCATTCCTGCCCCATTTGCTTGGAAACTTCGGACCACCA
CATCCAGTTATCGTGCGGTGGGTTGAGCCACACTTTTTGCCGGCAATGCC
TCAAAGCTGCCGCGGAGTGCAACATGTCCTCATGTGCCTTGTGTCGCAAA
AGTCACACCCTGGATCCAGACGTATTGCGTGCGCAGTTTCAGACGCAACG
GTTCGCGAATTTGAGCTGGCGGTTGGGCAAGACAAGGGCGACCCCTGTCT
TTTCGAAACCGAGTTGGGAGATGACGGCCGCCACTAGCTCCTTATGGCTG
GTCGCCTCGAACATTCAGTTTCATGACGATACGGCGCTGCCCGTGGGTAG
TAGCACCAGCCTGTTCGCCCCTCCTTCCTCTTCCTCCTCTTCCTCCTCTC
CTCCCTCTTCCTCCGCCACTGGCACATCCACCACCACTGCCGCAGACGGT
CAAGCTGAAGATGGGGACACACTCGAGCCTCAGGACGATGTATTCTACCT
GAGCCGTCTGAATGACCCGACCACATACTTTTTCCAATGGATCTGCAAGC
GGTATCGACTTACCGTCAAGCCCGAGCCCCATTCCTGCCCCATTTGCTTG
GAAACTTCGGACCACCACATCCAGTTATCGTGCGGTGGGTTGAGCCACAC
TTTTTGCCGGCAATGCCTCAAAGCTGCCGCGGAGTGCAACATGTCCTCAT
GTGCCTTGTGTCGCAAAAGTCACACCCTGGATCCAGACGTATTGCGTGCG
CAGTTTCAGACGCAACGGTTCGCGAATTTGAGCTGGCGGTTGGGCAAGAC
AAGGGCGACCCCTGTCTTTTCGAAACCGAGTTGGGAGATGACGGCCGCCA
CTAGCTCCTTATGGCTGGTCGCCTCGAACATTCAGTTTCATGACGATACG
GCGCTGCCCGTGGGTAGTAGCACCAGCCTGTTCGCCCCTCCTTCCTCTTC
CTCCTCTTCCTCCTCTCCTCCCTCTTCCTCCGCCACTGGCACATCCACCA
CCACTGCCGCAGACGGTCAAGCTGAAGATGGGGACACACTCGAGCCTCAG
GACGATGTATTCTACCTGAGCCGTCTGAATGACCCGACCACATACTTTTT
CCAATGGATCTGCAAGCGGTATCGACTTACCGTCAAGCCCGAGCCCCATT
CCTGCCCCATTTGCTTGGAAACTTCGGACCACCACATCCAGTTATCGTGC
G
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Synonyms
Publications