jgi.p|Nanoce1779_2|527739, mRNA_4801 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527739
Unique NamemRNA_4801
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length264
Alignment locationscaffold_9:655357..655620 -

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Properties
Property NameValue
TranscriptId527825
TrackFilteredModels2
ProteinId527739
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:655357..655620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527739gene_4801Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4801CDS_4801Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527739mRNA_4801-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4801 ID=mRNA_4801|Name=jgi.p|Nanoce1779_2|527739|organism=Nannochloropsis oceanica|type=mRNA|length=264bp
ATGTCCGGATTCTTTCTTCGTATTGCCAACTACATCGCGAACGAATTGAT
CGTCAAAGGACTGGCCAACAATCGGTCCTTCCAACGCTTTGCTTTGCGAA
CGGCGGATCACGTCGAGAAGGCCAAGATCACAGGAGCCGCTCACAGTGAA
AAGATTGCCAAGGAGGCAGAGAAGCAGGTGGGGGTGGCTGGACGGTTTTT
AGGGGCTTTTCAGAAGGAGATCGAAAAGGACATGAAAAAATTTTCACAAT
CAAGAAGGAAGTAG
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protein sequence of jgi.p|Nanoce1779_2|527739

>mRNA_4801-protein ID=mRNA_4801-protein|Name=jgi.p|Nanoce1779_2|527739|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MSGFFLRIANYIANELIVKGLANNRSFQRFALRTADHVEKAKITGAAHSE
KIAKEAEKQVGVAGRFLGAFQKEIEKDMKKFSQSRRK*
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mRNA from alignment at scaffold_9:655357..655620-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4801 ID=mRNA_4801|Name=jgi.p|Nanoce1779_2|527739|organism=Nannochloropsis oceanica|type=mRNA|length=264bp|location=Sequence derived from alignment at scaffold_9:655357..655620- (Nannochloropsis oceanica)
ATGTCCGGATTCTTTCTTCGTATTGCCAACTACATCGCGAACGAATTGAT
CGTCAAAGGACTGGCCAACAATCGGTCCTTCCAACGCTTTGCTTTGCGAA
CGGCGGATCACGTCGAGAAGGCCAAGATCACAGGAGCCGCTCACAGTGAA
AAGATTGCCAAGGAGGCAGAGAAGCAGGTGGGGGTGGCTGGACGGTTTTT
AGGGGCTTTTCAGAAGGAGATCGAAAAGGACATGAAAAAATTTTCACAAT
CAAGAAGGAAGTAG
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Coding sequence (CDS) from alignment at scaffold_9:655357..655620-

>mRNA_4801 ID=mRNA_4801|Name=jgi.p|Nanoce1779_2|527739|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_9:655357..655620- (Nannochloropsis oceanica)
ATGTCCGGATTCTTTCTTCGTATTGCCAACTACATCGCGAACGAATTGAT
CGTCAAAGGACTGGCCAACAATCGGTCCTTCCAACGCTTTGCTTTGCGAA
CGGCGGATCACGTCGAGAAGGCCAAGATCACAGGAGCCGCTCACAGTGAA
AAGATTGCCAAGGAGGCAGAGAAGCAGGTGGGGGTGGCTGGACGGTTTTT
AGGGGCTTTTCAGAAGGAGATCGAAAAGGACATGAAAAAATTTTCACAAT
CAAGAAGGAAGTAG
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Synonyms
Publications