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Properties
| Property Name | Value |
|---|
| TranscriptId | 229087 |
| Track | FilteredModels2 |
| ProteinId | 229001 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:134790..136739 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_48 ID=mRNA_48|Name=jgi.p|Nanoce1779_2|229001|organism=Nannochloropsis oceanica|type=mRNA|length=1225bp
CAGCTTTTCCATCGATTCTGACAACCCTACCCACCCCACGGTGGCCGTGC
CATACACACACCTGAGCAGACGGCCATGGACGCTTCAGAAGTTTACGACC
GACAAATCCGCCTGTGGGGGATGGAAGCTCAAAAACGTATGCAGGAAGCC
CGGGTACTGTTTTGTGGCTTACGGGCGCTGCCAGCTGAGATCTGCAAAAA
CGTCATCCTTGCCGGCATCAATGTCGCACTTCTTGATGCCGAGACCGTGA
CACACGAGGATTTGTGTGCGCAATTTTTTTTACGGCCAGAACACGTGGGA
ATGAACCGTGCAGAAGCCTGCCTCCCGGGTGTCCGAGAGATGAACCCGCT
GGCCACCGTTGAGTGCCATACTTCTCCCCCTTCCTCCCTCCCCGACACCT
TCTTCTCTTCCTTCGACATCATCGTCGCTTCAGACCTCCCTCCCTCCCAG
CTTATCCGTCTCGATGCCCTCATGCGGGAACGAGGGAGGGAGGCGGGGAG
GGGGGGAGGGTTTATGTACGCCGACACGTTCGGGCTGCATGGATGGGCCT
TCGTTGATTTGGGGGAGGGTTTCAAGGGGCGGATGGATGAGGCGAGTAAA
GGAGGAGCAGGACCAGGAGAAAAAGAGGGGGGAAAGCCCGCGGCACCGAA
GGAGTTCACGCTTTCCTACCCCTCCCTTCAAGAAGCGCTTTCAGAGCCGT
GGTCCTCTTTGAAAAATCGCTTTCCAGTGCCACGTGTTTTTGTGATGGGT
CGTCTCCTTGGCATCTTCGACGAGAAGCACGGGTGCCGCCCCTCCCCCTC
TGCCAGCGGCAAGGAGGTGGCGTTGTTCGTGTCCGAGAGCCAAGCGGCCC
TGCTGGAGAATGGCTTAGAAGAAGGATTTTTGAGCGAGGAGGAACTTCGG
TAAGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGATAAGATGGAAGGTCAA
CTTGGCTCTTACTCATGCATGACCATGAACTCCTCCTCCCTCCTTCCTTT
CTTCCCTCCCTCCTTCCGTCCAACCCTCAGTGCACTCGCTATCTCAGGTC
GGACGGAGCTGTCGCCGGTGTGTGCCGTCATTGGCGGTATTTTGGGGCAA
GAGATATTAAAGGCTGTTTCACGTAAAGGTGAGCCAGCCCTTAATTGCTT
CCTGTGGGATGGGGAGACGCATGAAGGGAGGGTGATCCAGGTACCGCCGC
CTGCGGTAAAGAGGTAGGGGGGGAC back to topprotein sequence of jgi.p|Nanoce1779_2|229001 >mRNA_48-protein ID=mRNA_48-protein|Name=jgi.p|Nanoce1779_2|229001|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MDASEVYDRQIRLWGMEAQKRMQEARVLFCGLRALPAEICKNVILAGINV
ALLDAETVTHEDLCAQFFLRPEHVGMNRAEACLPGVREMNPLATVECHTS
PPSSLPDTFFSSFDIIVASDLPPSQLIRLDALMRERGREAGRGGGFMYAD
TFGLHGWAFVDLGEGFKGRMDEASKGGAGPGEKEGGKPAAPKEFTLSYPS
LQEALSEPWSSLKNRFPVPRVFVMGRLLGIFDEKHGCRPSPSASGKEVAL
FVSESQAALLENGLEEGFLSEEELR* back to topmRNA from alignment at scaffold_3:134790..136739- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_48 ID=mRNA_48|Name=jgi.p|Nanoce1779_2|229001|organism=Nannochloropsis oceanica|type=mRNA|length=1950bp|location=Sequence derived from alignment at scaffold_3:134790..136739- (Nannochloropsis oceanica)
CAGCTTTTCCATCGATTCTGACAACCCTACCCACCCCACGGTGGCCGTGC
CATACACACACCTGAGCAGACGGCCATGGACGCTTCAGAAGTTTACGACC
GACAAATCCGCCTGTGGGGGATGGAAGCTCAAAAACGTATGCAGGAAGCC
CGGGTACTGTTTTGTGGCTTACGGGCGCTGCCAGCTGAGGTACGAAAGAG
AGGATGGAAGGAGGGAGGGAGGGAGGGAGAAGGGGAAAGAGAAGAAGAAG
GGTAGGAATGAGGAGGGGTGGAAGCGGTTTTCAAATGAAAAGTCCGTTTG
ATGTGTAACAATATGTCGCCTTTTCATTTGTCGACTGATAAAGCCTTCCC
TGCACCCTACCCCCTATTCAATCCCTCGCTTCCTCCATCAATGCCTCCCT
CGGCTCCCCAGATCTGCAAAAACGTCATCCTTGCCGGCATCAATGTCGCA
CTTCTTGATGCCGAGACCGTGACACACGAGGATTTGTGTGCGCAATTTTT
TTTACGGCCAGAACACGTGGGAATGAACGTATGTCCAGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAAGGAAGGAAGCAAGGACGGGCAGGGAAG
GGGGGGAAGGAAAGAAGGAGCAAGCGTAATCATCGTTCAAGCCCTTCTAT
TCATGCTCGTATACGATGATCCTTGCTTCCATACCAGCGTGCAGAAGCCT
GCCTCCCGGGTGTCCGAGAGATGAACCCGCTGGCCACCGTTGAGTGCCAT
ACTTCTCCCCCTTCCTCCCTCCCCGACACCTTCTTCTCTTCCTTCGACAT
CATCGTCGCTTCAGACCTCCCTCCCTCCCAGCTTATCCGTCTCGATGCCC
TCATGCGGGAACGAGGGAGGGAGGCGGGGAGGGGGGGAGGGTTTATGTAC
GCCGACACGTTCGGGCTGCATGGATGGGCCTTCGTTGATTTGGGGGAGGG
TTTCAAGGGGCGGATGGATGAGGCGAGTAAAGGAGGAGCAGGACCAGGAG
AAAAAGAGGGGGGAAAGGTAGGTGGGAAGGAGGGAGGGAGGGAGGAGGGG
GGGGGGGGGAGGGAGGGAGGGAGGGAGGAAGGGGGGGGGGGGGAGGGAGA
GAAGGAGGGAGGACGGGTGCTGCACGTGTAAGGTTACAGACGATTTTGAC
ACCAACATTTCTCCTTCCCTCCCTCCCTCCCTCCATTTCTCTTTCCCTCC
CTCCTTCCAGCCCGCGGCACCGAAGGAGTTCACGCTTTCCTACCCCTCCC
TTCAAGAAGCGCTTTCAGAGCCGTGGTCCTCTTTGAAAAATCGCTTTCCA
GTGCCACGTGTTTTTGTGATGGGTCGTCGTACGTAGGGAGGAAGGGAGGA
AGGGAGGGAGAAAGGGAGGGTGAGTTTTATATCTTGGTCAGCATGTGTAC
CGGTAAGCAGAACGTAGTCCTCTCCTCTCTCTCGAGCTCACGTGCTTCCC
CTCCCTCCCTCCCTCCCTCCCTCACGTAGTCCTTGGCATCTTCGACGAGA
AGCACGGGTGCCGCCCCTCCCCCTCTGCCAGCGGCAAGGAGGTGGCGTTG
TTCGTGTCCGAGAGCCAAGCGGCCCTGCTGGAGAATGGCTTAGAAGAAGG
ATTTTTGAGCGAGGAGGAACTTCGGTAAGGAGGGAGGAAGGGAGGGAGGG
AGGGAGGGATAAGATGGAAGGTCAACTTGGCTCTTACTCATGCATGACCA
TGAACTCCTCCTCCCTCCTTCCTTTCTTCCCTCCCTCCTTCCGTCCAACC
CTCAGTGCACTCGCTATCTCAGGTCGGACGGAGCTGTCGCCGGTGTGTGC
CGTCATTGGCGGTATTTTGGGGCAAGAGATATTAAAGGCTGTTTCACGTA
AAGGTGAGCCAGCCCTTAATTGCTTCCTGTGGGATGGGGAGACGCATGAA
GGGAGGGTGATCCAGGTACCGCCGCCTGCGGTAAAGAGGTAGGGGGGGAC
back to topCoding sequence (CDS) from alignment at scaffold_3:134790..136739- >mRNA_48 ID=mRNA_48|Name=jgi.p|Nanoce1779_2|229001|organism=Nannochloropsis oceanica|type=CDS|length=4140bp|location=Sequence derived from alignment at scaffold_3:134790..136739- (Nannochloropsis oceanica)
TCCTTGGCATCTTCGACGAGAAGCACGGGTGCCGCCCCTCCCCCTCTGCC
AGCGGCAAGGAGGTGGCGTTGTTCGTGTCCGAGAGCCAAGCGGCCCTGCT
GGAGAATGGCTTAGAAGAAGGATTTTTGAGCGAGGAGGAACTTCGGTAAC
CCGCGGCACCGAAGGAGTTCACGCTTTCCTACCCCTCCCTTCAAGAAGCG
CTTTCAGAGCCGTGGTCCTCTTTGAAAAATCGCTTTCCAGTGCCACGTGT
TTTTGTGATGGGTCGTCCGTGCAGAAGCCTGCCTCCCGGGTGTCCGAGAG
ATGAACCCGCTGGCCACCGTTGAGTGCCATACTTCTCCCCCTTCCTCCCT
CCCCGACACCTTCTTCTCTTCCTTCGACATCATCGTCGCTTCAGACCTCC
CTCCCTCCCAGCTTATCCGTCTCGATGCCCTCATGCGGGAACGAGGGAGG
GAGGCGGGGAGGGGGGGAGGGTTTATGTACGCCGACACGTTCGGGCTGCA
TGGATGGGCCTTCGTTGATTTGGGGGAGGGTTTCAAGGGGCGGATGGATG
AGGCGAGTAAAGGAGGAGCAGGACCAGGAGAAAAAGAGGGGGGAAAGATC
TGCAAAAACGTCATCCTTGCCGGCATCAATGTCGCACTTCTTGATGCCGA
GACCGTGACACACGAGGATTTGTGTGCGCAATTTTTTTTACGGCCAGAAC
ACGTGGGAATGAACATGGACGCTTCAGAAGTTTACGACCGACAAATCCGC
CTGTGGGGGATGGAAGCTCAAAAACGTATGCAGGAAGCCCGGGTACTGTT
TTGTGGCTTACGGGCGCTGCCAGCTGAGTCCTTGGCATCTTCGACGAGAA
GCACGGGTGCCGCCCCTCCCCCTCTGCCAGCGGCAAGGAGGTGGCGTTGT
TCGTGTCCGAGAGCCAAGCGGCCCTGCTGGAGAATGGCTTAGAAGAAGGA
TTTTTGAGCGAGGAGGAACTTCGGTAACCCGCGGCACCGAAGGAGTTCAC
GCTTTCCTACCCCTCCCTTCAAGAAGCGCTTTCAGAGCCGTGGTCCTCTT
TGAAAAATCGCTTTCCAGTGCCACGTGTTTTTGTGATGGGTCGTCCGTGC
AGAAGCCTGCCTCCCGGGTGTCCGAGAGATGAACCCGCTGGCCACCGTTG
AGTGCCATACTTCTCCCCCTTCCTCCCTCCCCGACACCTTCTTCTCTTCC
TTCGACATCATCGTCGCTTCAGACCTCCCTCCCTCCCAGCTTATCCGTCT
CGATGCCCTCATGCGGGAACGAGGGAGGGAGGCGGGGAGGGGGGGAGGGT
TTATGTACGCCGACACGTTCGGGCTGCATGGATGGGCCTTCGTTGATTTG
GGGGAGGGTTTCAAGGGGCGGATGGATGAGGCGAGTAAAGGAGGAGCAGG
ACCAGGAGAAAAAGAGGGGGGAAAGATCTGCAAAAACGTCATCCTTGCCG
GCATCAATGTCGCACTTCTTGATGCCGAGACCGTGACACACGAGGATTTG
TGTGCGCAATTTTTTTTACGGCCAGAACACGTGGGAATGAACATGGACGC
TTCAGAAGTTTACGACCGACAAATCCGCCTGTGGGGGATGGAAGCTCAAA
AACGTATGCAGGAAGCCCGGGTACTGTTTTGTGGCTTACGGGCGCTGCCA
GCTGAGTCCTTGGCATCTTCGACGAGAAGCACGGGTGCCGCCCCTCCCCC
TCTGCCAGCGGCAAGGAGGTGGCGTTGTTCGTGTCCGAGAGCCAAGCGGC
CCTGCTGGAGAATGGCTTAGAAGAAGGATTTTTGAGCGAGGAGGAACTTC
GGTAACCCGCGGCACCGAAGGAGTTCACGCTTTCCTACCCCTCCCTTCAA
GAAGCGCTTTCAGAGCCGTGGTCCTCTTTGAAAAATCGCTTTCCAGTGCC
ACGTGTTTTTGTGATGGGTCGTCCGTGCAGAAGCCTGCCTCCCGGGTGTC
CGAGAGATGAACCCGCTGGCCACCGTTGAGTGCCATACTTCTCCCCCTTC
CTCCCTCCCCGACACCTTCTTCTCTTCCTTCGACATCATCGTCGCTTCAG
ACCTCCCTCCCTCCCAGCTTATCCGTCTCGATGCCCTCATGCGGGAACGA
GGGAGGGAGGCGGGGAGGGGGGGAGGGTTTATGTACGCCGACACGTTCGG
GCTGCATGGATGGGCCTTCGTTGATTTGGGGGAGGGTTTCAAGGGGCGGA
TGGATGAGGCGAGTAAAGGAGGAGCAGGACCAGGAGAAAAAGAGGGGGGA
AAGATCTGCAAAAACGTCATCCTTGCCGGCATCAATGTCGCACTTCTTGA
TGCCGAGACCGTGACACACGAGGATTTGTGTGCGCAATTTTTTTTACGGC
CAGAACACGTGGGAATGAACATGGACGCTTCAGAAGTTTACGACCGACAA
ATCCGCCTGTGGGGGATGGAAGCTCAAAAACGTATGCAGGAAGCCCGGGT
ACTGTTTTGTGGCTTACGGGCGCTGCCAGCTGAGTCCTTGGCATCTTCGA
CGAGAAGCACGGGTGCCGCCCCTCCCCCTCTGCCAGCGGCAAGGAGGTGG
CGTTGTTCGTGTCCGAGAGCCAAGCGGCCCTGCTGGAGAATGGCTTAGAA
GAAGGATTTTTGAGCGAGGAGGAACTTCGGTAACCCGCGGCACCGAAGGA
GTTCACGCTTTCCTACCCCTCCCTTCAAGAAGCGCTTTCAGAGCCGTGGT
CCTCTTTGAAAAATCGCTTTCCAGTGCCACGTGTTTTTGTGATGGGTCGT
CCGTGCAGAAGCCTGCCTCCCGGGTGTCCGAGAGATGAACCCGCTGGCCA
CCGTTGAGTGCCATACTTCTCCCCCTTCCTCCCTCCCCGACACCTTCTTC
TCTTCCTTCGACATCATCGTCGCTTCAGACCTCCCTCCCTCCCAGCTTAT
CCGTCTCGATGCCCTCATGCGGGAACGAGGGAGGGAGGCGGGGAGGGGGG
GAGGGTTTATGTACGCCGACACGTTCGGGCTGCATGGATGGGCCTTCGTT
GATTTGGGGGAGGGTTTCAAGGGGCGGATGGATGAGGCGAGTAAAGGAGG
AGCAGGACCAGGAGAAAAAGAGGGGGGAAAGATCTGCAAAAACGTCATCC
TTGCCGGCATCAATGTCGCACTTCTTGATGCCGAGACCGTGACACACGAG
GATTTGTGTGCGCAATTTTTTTTACGGCCAGAACACGTGGGAATGAACAT
GGACGCTTCAGAAGTTTACGACCGACAAATCCGCCTGTGGGGGATGGAAG
CTCAAAAACGTATGCAGGAAGCCCGGGTACTGTTTTGTGGCTTACGGGCG
CTGCCAGCTGAGTCCTTGGCATCTTCGACGAGAAGCACGGGTGCCGCCCC
TCCCCCTCTGCCAGCGGCAAGGAGGTGGCGTTGTTCGTGTCCGAGAGCCA
AGCGGCCCTGCTGGAGAATGGCTTAGAAGAAGGATTTTTGAGCGAGGAGG
AACTTCGGTAACCCGCGGCACCGAAGGAGTTCACGCTTTCCTACCCCTCC
CTTCAAGAAGCGCTTTCAGAGCCGTGGTCCTCTTTGAAAAATCGCTTTCC
AGTGCCACGTGTTTTTGTGATGGGTCGTCCGTGCAGAAGCCTGCCTCCCG
GGTGTCCGAGAGATGAACCCGCTGGCCACCGTTGAGTGCCATACTTCTCC
CCCTTCCTCCCTCCCCGACACCTTCTTCTCTTCCTTCGACATCATCGTCG
CTTCAGACCTCCCTCCCTCCCAGCTTATCCGTCTCGATGCCCTCATGCGG
GAACGAGGGAGGGAGGCGGGGAGGGGGGGAGGGTTTATGTACGCCGACAC
GTTCGGGCTGCATGGATGGGCCTTCGTTGATTTGGGGGAGGGTTTCAAGG
GGCGGATGGATGAGGCGAGTAAAGGAGGAGCAGGACCAGGAGAAAAAGAG
GGGGGAAAGATCTGCAAAAACGTCATCCTTGCCGGCATCAATGTCGCACT
TCTTGATGCCGAGACCGTGACACACGAGGATTTGTGTGCGCAATTTTTTT
TACGGCCAGAACACGTGGGAATGAACATGGACGCTTCAGAAGTTTACGAC
CGACAAATCCGCCTGTGGGGGATGGAAGCTCAAAAACGTATGCAGGAAGC
CCGGGTACTGTTTTGTGGCTTACGGGCGCTGCCAGCTGAG back to top
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