jgi.p|Nanoce1779_2|587939, mRNA_4799 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587939
Unique NamemRNA_4799
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length924
Alignment locationscaffold_9:651975..652898 +

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Properties
Property NameValue
TranscriptId588025
TrackFilteredModels2
ProteinId587939
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:651975..652898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587939gene_4799Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587939mRNA_4799-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4799CDS_4799Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4799 ID=mRNA_4799|Name=jgi.p|Nanoce1779_2|587939|organism=Nannochloropsis oceanica|type=mRNA|length=924bp
ACAGGGATGGCTAAGTCTTCCACAGTCACCGACGCTACCCGCAGCACGGA
CGGTCTTGTCTTGCTGGCTCAAGGTGCCGAGGCCCGGGTTTTTGAGCTGC
CATCGTTCTTGGGAGGCCGCCCCGCCATAGTCAAGGAGCGATTTGCCAAG
TCCTATCGCCTTCCCGTGCTCGACTCCAAGCTGACCAAGCAACGCACCGT
GGGTGAAGTCAGATGCATGCTGCGGTGCGCTAAAGCAGGGGTACATGCGC
CGTGCGTGTACATGGTGGACGCGCAGGCCTCACGGATTTACATGGAAAAG
ATTGAGGGGCGGACACTCAAGGCATTCCTGAGAGATGAGTACGATGAAGC
CACGAGAACCTACACTTCCGTAGCCCACGCCTTGGTCAGGGAGCTTGGCA
CGGTAGTGGCACGAATTCACAATGCCGAGATGGTACACGGGGACTTGACC
ACGTCCAACTTTCTAGTGGTGGGCAAAGACGACTGTGAAGGGGAAGGGCA
AGTCTTACCCCTGCACAAGCTCGTGGCGATCGACTTTGGCCTGGGGTTTT
TGCAGCCTTTGCCGGAAGACAAGGCCGTGGACCTTTATGTTTTGGAACGG
GCTTTTGTCTCGACGCATCCCAATTCACAAGGATTGGTCGATCTGGCGAT
GGCAGCGTATGAGCGGAGTTCTCCTTCACATCGCTCGGCCTTGGTGCTTA
AAAAGCTGGAGGACGTACGACGGCGGGGACGCAAACAAGACATGTTTGGA
TAGAATCAATCATTGAAGAGTAGTGTAAATATCCACAGATGCGATAAGCT
AAGAAATAATCTACGAGCAACAATTGAATGAGCACGGAGCGTGATTTGCT
TTGAGGGAGCCATGTCAAACAAATGCGGCGCGGGTTCCGTGATCCCCATG
TCTGCCCTACTTAAGTAATCGTGG
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protein sequence of jgi.p|Nanoce1779_2|587939

>mRNA_4799-protein ID=mRNA_4799-protein|Name=jgi.p|Nanoce1779_2|587939|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MAKSSTVTDATRSTDGLVLLAQGAEARVFELPSFLGGRPAIVKERFAKSY
RLPVLDSKLTKQRTVGEVRCMLRCAKAGVHAPCVYMVDAQASRIYMEKIE
GRTLKAFLRDEYDEATRTYTSVAHALVRELGTVVARIHNAEMVHGDLTTS
NFLVVGKDDCEGEGQVLPLHKLVAIDFGLGFLQPLPEDKAVDLYVLERAF
VSTHPNSQGLVDLAMAAYERSSPSHRSALVLKKLEDVRRRGRKQDMFG*
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mRNA from alignment at scaffold_9:651975..652898+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4799 ID=mRNA_4799|Name=jgi.p|Nanoce1779_2|587939|organism=Nannochloropsis oceanica|type=mRNA|length=924bp|location=Sequence derived from alignment at scaffold_9:651975..652898+ (Nannochloropsis oceanica)
ACAGGGATGGCTAAGTCTTCCACAGTCACCGACGCTACCCGCAGCACGGA
CGGTCTTGTCTTGCTGGCTCAAGGTGCCGAGGCCCGGGTTTTTGAGCTGC
CATCGTTCTTGGGAGGCCGCCCCGCCATAGTCAAGGAGCGATTTGCCAAG
TCCTATCGCCTTCCCGTGCTCGACTCCAAGCTGACCAAGCAACGCACCGT
GGGTGAAGTCAGATGCATGCTGCGGTGCGCTAAAGCAGGGGTACATGCGC
CGTGCGTGTACATGGTGGACGCGCAGGCCTCACGGATTTACATGGAAAAG
ATTGAGGGGCGGACACTCAAGGCATTCCTGAGAGATGAGTACGATGAAGC
CACGAGAACCTACACTTCCGTAGCCCACGCCTTGGTCAGGGAGCTTGGCA
CGGTAGTGGCACGAATTCACAATGCCGAGATGGTACACGGGGACTTGACC
ACGTCCAACTTTCTAGTGGTGGGCAAAGACGACTGTGAAGGGGAAGGGCA
AGTCTTACCCCTGCACAAGCTCGTGGCGATCGACTTTGGCCTGGGGTTTT
TGCAGCCTTTGCCGGAAGACAAGGCCGTGGACCTTTATGTTTTGGAACGG
GCTTTTGTCTCGACGCATCCCAATTCACAAGGATTGGTCGATCTGGCGAT
GGCAGCGTATGAGCGGAGTTCTCCTTCACATCGCTCGGCCTTGGTGCTTA
AAAAGCTGGAGGACGTACGACGGCGGGGACGCAAACAAGACATGTTTGGA
TAGAATCAATCATTGAAGAGTAGTGTAAATATCCACAGATGCGATAAGCT
AAGAAATAATCTACGAGCAACAATTGAATGAGCACGGAGCGTGATTTGCT
TTGAGGGAGCCATGTCAAACAAATGCGGCGCGGGTTCCGTGATCCCCATG
TCTGCCCTACTTAAGTAATCGTGG
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Coding sequence (CDS) from alignment at scaffold_9:651975..652898+

>mRNA_4799 ID=mRNA_4799|Name=jgi.p|Nanoce1779_2|587939|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_9:651975..652898+ (Nannochloropsis oceanica)
ATGGCTAAGTCTTCCACAGTCACCGACGCTACCCGCAGCACGGACGGTCT
TGTCTTGCTGGCTCAAGGTGCCGAGGCCCGGGTTTTTGAGCTGCCATCGT
TCTTGGGAGGCCGCCCCGCCATAGTCAAGGAGCGATTTGCCAAGTCCTAT
CGCCTTCCCGTGCTCGACTCCAAGCTGACCAAGCAACGCACCGTGGGTGA
AGTCAGATGCATGCTGCGGTGCGCTAAAGCAGGGGTACATGCGCCGTGCG
TGTACATGGTGGACGCGCAGGCCTCACGGATTTACATGGAAAAGATTGAG
GGGCGGACACTCAAGGCATTCCTGAGAGATGAGTACGATGAAGCCACGAG
AACCTACACTTCCGTAGCCCACGCCTTGGTCAGGGAGCTTGGCACGGTAG
TGGCACGAATTCACAATGCCGAGATGGTACACGGGGACTTGACCACGTCC
AACTTTCTAGTGGTGGGCAAAGACGACTGTGAAGGGGAAGGGCAAGTCTT
ACCCCTGCACAAGCTCGTGGCGATCGACTTTGGCCTGGGGTTTTTGCAGC
CTTTGCCGGAAGACAAGGCCGTGGACCTTTATGTTTTGGAACGGGCTTTT
GTCTCGACGCATCCCAATTCACAAGGATTGGTCGATCTGGCGATGGCAGC
GTATGAGCGGAGTTCTCCTTCACATCGCTCGGCCTTGGTGCTTAAAAAGC
TGGAGGACGTACGACGGCGGGGACGCAAACAAGACATGTTTGGATAG
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Synonyms
Publications