jgi.p|Nanoce1779_2|587935, mRNA_4798 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587935
Unique NamemRNA_4798
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1124
Alignment locationscaffold_9:650730..651853 -

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Properties
Property NameValue
TranscriptId588021
TrackFilteredModels2
ProteinId587935
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:650730..651853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587935gene_4798Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587935mRNA_4798-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4798CDS_4798Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4798 ID=mRNA_4798|Name=jgi.p|Nanoce1779_2|587935|organism=Nannochloropsis oceanica|type=mRNA|length=1124bp
AGGCGCTTGAATGCTTGCGGTATCCTTGCCACAGGTTCACCACTTCTTGT
GCAGGTGAGTACGGTTCGAATGGAAAGGAAATCTATGTCTTGACCTCCCT
ACCTCCCCACCTCCCCATCCACACACACCACCCTCACGGTAAACAAGGGC
GCTGCGCCGTAGATTGCATTTGTTGGTTCTTTTTTCCCTGGCCAAAGCGT
TCCTTCTTTGTAGATTGACCGTGTCATCATCTTCTGTGCTCATGGCGGCC
GTGACTTCCACCGGAGGTAGGAGCAGTACCGAGGGTCTCCGCGACGTTGG
CAGCAGCAGTGGCGGAAGCATCATTACGGGCAACAGCAGCTCAATCGCTT
CCTCTAATACTACATCGACGTCGCCACATCGGTGGGTCCAAGCCCTTGAC
CTGGCTCTGGAAAAAAACAAGGCCGACATGCACTCGCGCTTCATGCAATT
GGCTACAATTGGTCAGCGTGAAGCCTCCACGGACCAAGACGATGAAGAAG
ACGTCATAAGTGACAAGATATGTTCTAAATACCGCCCTCACGTTCGGTGG
GTCGTCTTCCGCGGATTTTTCCATGACAACACTACCACGCTCAAAGTCAT
AACTGATAGCCGAAGCGAGAAAGTAAAAGACTTGCGAGCAAACCCCTTCG
GTGAGCTATCTTGGTATTTTGTTCAGTCCAGGGAACAATTTCGTCTGACC
GGTAAATGTCAGCTCGTCATGGCAGGGGAGAGTGATGCTGCACTCGCGGA
TGCTCGTGAAGCTCAATGGGCCGCACTCTCTGATAATGCCCGGTTGCAAT
TTATTTGGCCTCTTCCAGGTGCCCCTCAGGAAGAGGACAGCATGACGGAG
GAAATGAGGATGGCTTTGTTCAATCCTCCTCCACCCACAGCATCTTCGGC
TCCGCCAGATACTTTTGTGTTGTTGTTGTTTCATCCCTCGAGGGTGGACC
ACCTGCAATTACGGCCCAACCCGCAGGTGCGGATGGTGCATAAACAGCGG
CAGGGAAAAGGAGGGAAAGAAGGAGACACTAGAAAAGCAGAGTGTGCAGC
GACAAGCGAAGAGTGGTTGACACGGCGGGTCAATCCTTGAGTGACCGATT
TCGGAAAAAAAGTATAGATTGTCG
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protein sequence of jgi.p|Nanoce1779_2|587935

>mRNA_4798-protein ID=mRNA_4798-protein|Name=jgi.p|Nanoce1779_2|587935|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MAAVTSTGGRSSTEGLRDVGSSSGGSIITGNSSSIASSNTTSTSPHRWVQ
ALDLALEKNKADMHSRFMQLATIGQREASTDQDDEEDVISDKICSKYRPH
VRWVVFRGFFHDNTTTLKVITDSRSEKVKDLRANPFGELSWYFVQSREQF
RLTGKCQLVMAGESDAALADAREAQWAALSDNARLQFIWPLPGAPQEEDS
MTEEMRMALFNPPPPTASSAPPDTFVLLLFHPSRVDHLQLRPNPQVRMVH
KQRQGKGGKEGDTRKAECAATSEEWLTRRVNP*
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mRNA from alignment at scaffold_9:650730..651853-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4798 ID=mRNA_4798|Name=jgi.p|Nanoce1779_2|587935|organism=Nannochloropsis oceanica|type=mRNA|length=1124bp|location=Sequence derived from alignment at scaffold_9:650730..651853- (Nannochloropsis oceanica)
AGGCGCTTGAATGCTTGCGGTATCCTTGCCACAGGTTCACCACTTCTTGT
GCAGGTGAGTACGGTTCGAATGGAAAGGAAATCTATGTCTTGACCTCCCT
ACCTCCCCACCTCCCCATCCACACACACCACCCTCACGGTAAACAAGGGC
GCTGCGCCGTAGATTGCATTTGTTGGTTCTTTTTTCCCTGGCCAAAGCGT
TCCTTCTTTGTAGATTGACCGTGTCATCATCTTCTGTGCTCATGGCGGCC
GTGACTTCCACCGGAGGTAGGAGCAGTACCGAGGGTCTCCGCGACGTTGG
CAGCAGCAGTGGCGGAAGCATCATTACGGGCAACAGCAGCTCAATCGCTT
CCTCTAATACTACATCGACGTCGCCACATCGGTGGGTCCAAGCCCTTGAC
CTGGCTCTGGAAAAAAACAAGGCCGACATGCACTCGCGCTTCATGCAATT
GGCTACAATTGGTCAGCGTGAAGCCTCCACGGACCAAGACGATGAAGAAG
ACGTCATAAGTGACAAGATATGTTCTAAATACCGCCCTCACGTTCGGTGG
GTCGTCTTCCGCGGATTTTTCCATGACAACACTACCACGCTCAAAGTCAT
AACTGATAGCCGAAGCGAGAAAGTAAAAGACTTGCGAGCAAACCCCTTCG
GTGAGCTATCTTGGTATTTTGTTCAGTCCAGGGAACAATTTCGTCTGACC
GGTAAATGTCAGCTCGTCATGGCAGGGGAGAGTGATGCTGCACTCGCGGA
TGCTCGTGAAGCTCAATGGGCCGCACTCTCTGATAATGCCCGGTTGCAAT
TTATTTGGCCTCTTCCAGGTGCCCCTCAGGAAGAGGACAGCATGACGGAG
GAAATGAGGATGGCTTTGTTCAATCCTCCTCCACCCACAGCATCTTCGGC
TCCGCCAGATACTTTTGTGTTGTTGTTGTTTCATCCCTCGAGGGTGGACC
ACCTGCAATTACGGCCCAACCCGCAGGTGCGGATGGTGCATAAACAGCGG
CAGGGAAAAGGAGGGAAAGAAGGAGACACTAGAAAAGCAGAGTGTGCAGC
GACAAGCGAAGAGTGGTTGACACGGCGGGTCAATCCTTGAGTGACCGATT
TCGGAAAAAAAGTATAGATTGTCG
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Coding sequence (CDS) from alignment at scaffold_9:650730..651853-

>mRNA_4798 ID=mRNA_4798|Name=jgi.p|Nanoce1779_2|587935|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at scaffold_9:650730..651853- (Nannochloropsis oceanica)
ATGGCGGCCGTGACTTCCACCGGAGGTAGGAGCAGTACCGAGGGTCTCCG
CGACGTTGGCAGCAGCAGTGGCGGAAGCATCATTACGGGCAACAGCAGCT
CAATCGCTTCCTCTAATACTACATCGACGTCGCCACATCGGTGGGTCCAA
GCCCTTGACCTGGCTCTGGAAAAAAACAAGGCCGACATGCACTCGCGCTT
CATGCAATTGGCTACAATTGGTCAGCGTGAAGCCTCCACGGACCAAGACG
ATGAAGAAGACGTCATAAGTGACAAGATATGTTCTAAATACCGCCCTCAC
GTTCGGTGGGTCGTCTTCCGCGGATTTTTCCATGACAACACTACCACGCT
CAAAGTCATAACTGATAGCCGAAGCGAGAAAGTAAAAGACTTGCGAGCAA
ACCCCTTCGGTGAGCTATCTTGGTATTTTGTTCAGTCCAGGGAACAATTT
CGTCTGACCGGTAAATGTCAGCTCGTCATGGCAGGGGAGAGTGATGCTGC
ACTCGCGGATGCTCGTGAAGCTCAATGGGCCGCACTCTCTGATAATGCCC
GGTTGCAATTTATTTGGCCTCTTCCAGGTGCCCCTCAGGAAGAGGACAGC
ATGACGGAGGAAATGAGGATGGCTTTGTTCAATCCTCCTCCACCCACAGC
ATCTTCGGCTCCGCCAGATACTTTTGTGTTGTTGTTGTTTCATCCCTCGA
GGGTGGACCACCTGCAATTACGGCCCAACCCGCAGGTGCGGATGGTGCAT
AAACAGCGGCAGGGAAAAGGAGGGAAAGAAGGAGACACTAGAAAAGCAGA
GTGTGCAGCGACAAGCGAAGAGTGGTTGACACGGCGGGTCAATCCTTGA
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Synonyms
Publications