jgi.p|Nanoce1779_2|565564, mRNA_4796 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|565564
Unique Name	mRNA_4796
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1155
Alignment location	scaffold_9:648115..649269 +

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Properties


Property Name	Value
TranscriptId	565650
Track	FilteredModels2
ProteinId	565564

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:648115..649269 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|565564	gene_4796	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|565564	mRNA_4796-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4796	CDS_4796	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:648115..649269+
coding sequence from alignment at scaffold_9:648115..649269+

mRNA sequence

>mRNA_4796 ID=mRNA_4796|Name=jgi.p|Nanoce1779_2|565564|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp
ATGACGAGGCAAAAGAAAACCCGCACGGAGTTTCTCCCCATCGAGTGGTT
CGATATCTTGAGGGGCGACACCGCAGACGAGCAAGGAGACGTGATGCGGC
GCATTCAGCGCGTGACCCTCGACACGGTGCCTCTCTTCCGGCAGCTCGCG
AATGACTGCGTTCTCGACGTCCTTCTGTATATGAACCCTCGTTACCGGCA
GAAAATAGTGACCGCCGTGGCCAACCGCATCAATGCCGCGTACGCCTTAT
TTTGCGAGCACCATCCGGGTTTTCATGGCAATAAAAAGGTATCGGTCATC
GGCCATTCCCTTGGCTCTGTGGTTCTCTTTGATTTGCTTGCACATCAGAC
GTCAGCCCACCAAGAGGACGAGCCCCTCCTGTCGCCCACGGACGTGCACA
TTGACTTTCCCCTATTGACCTTCCCAGTGGATATGTTTCTCACGCTCGGC
TCACCAGTTGGTTTGTTTTTGTGCGTGCGGGAGCAGGAAATGCCCCCCGA
TTTCCGCTTTCCTACCACAACCCGTTTCCTCAACGTCTTCCATCCCTTGG
ACCCTATTGCCTATCGGCTGGAGCCCCTCCTCCAGCCCGCCCTTTCGCAG
CTGCCTCCTGCGTTAGTTCCCCATCATGAGGGTGCTGGCAGCAAGACATT
CGTCACAAAAGCGCGGGAACAGAAGCGGCTGGTCTCGGGCTCGCTGTCCG
CCTTGTCGTTGAGCGTCTCGGCGGGCGCTAAGAGCTTGATGGGCTCCCTT
TCCAGCCTGACCATGACCAAGCCTGCATTTTCCCCTGGCGGATACCAGGA
GATGCTCACACTGGATACAAGCAACAAGAATGGAGCTGATCTTATAGGCA
TGAGCCCGCCTGTTGGCATCGTGGAGGATGAGGAAGTCGCCAAGGAGGTG
CCAGACGTGGCTTCTTTGCGTATTAATAACGGACAACGAGTGGACTATGC
ACTGCAGGAGATGGTGTCGGAGCAGATCAACGAGTACGTGTCTTCGATTG
CCGCACACTCTTGCTACTTTGCCTCCCCCGATGTGGCCTACTTTATCACA
CAGCTGGTGTACGACAAGGCCGCTTCTGGCGACACGGGGATCCCGGATAT
CACGGACGGTGATGGAAAGGAAGTGATGGCGAGCGAAAAGGAAGAAGGAA
GATAG

protein sequence of jgi.p|Nanoce1779_2|565564

>mRNA_4796-protein ID=mRNA_4796-protein|Name=jgi.p|Nanoce1779_2|565564|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MTRQKKTRTEFLPIEWFDILRGDTADEQGDVMRRIQRVTLDTVPLFRQLA
NDCVLDVLLYMNPRYRQKIVTAVANRINAAYALFCEHHPGFHGNKKVSVI
GHSLGSVVLFDLLAHQTSAHQEDEPLLSPTDVHIDFPLLTFPVDMFLTLG
SPVGLFLCVREQEMPPDFRFPTTTRFLNVFHPLDPIAYRLEPLLQPALSQ
LPPALVPHHEGAGSKTFVTKAREQKRLVSGSLSALSLSVSAGAKSLMGSL
SSLTMTKPAFSPGGYQEMLTLDTSNKNGADLIGMSPPVGIVEDEEVAKEV
PDVASLRINNGQRVDYALQEMVSEQINEYVSSIAAHSCYFASPDVAYFIT
QLVYDKAASGDTGIPDITDGDGKEVMASEKEEGR*

mRNA from alignment at scaffold_9:648115..649269+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4796 ID=mRNA_4796|Name=jgi.p|Nanoce1779_2|565564|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp|location=Sequence derived from alignment at scaffold_9:648115..649269+ (Nannochloropsis oceanica)
ATGACGAGGCAAAAGAAAACCCGCACGGAGTTTCTCCCCATCGAGTGGTT
CGATATCTTGAGGGGCGACACCGCAGACGAGCAAGGAGACGTGATGCGGC
GCATTCAGCGCGTGACCCTCGACACGGTGCCTCTCTTCCGGCAGCTCGCG
AATGACTGCGTTCTCGACGTCCTTCTGTATATGAACCCTCGTTACCGGCA
GAAAATAGTGACCGCCGTGGCCAACCGCATCAATGCCGCGTACGCCTTAT
TTTGCGAGCACCATCCGGGTTTTCATGGCAATAAAAAGGTATCGGTCATC
GGCCATTCCCTTGGCTCTGTGGTTCTCTTTGATTTGCTTGCACATCAGAC
GTCAGCCCACCAAGAGGACGAGCCCCTCCTGTCGCCCACGGACGTGCACA
TTGACTTTCCCCTATTGACCTTCCCAGTGGATATGTTTCTCACGCTCGGC
TCACCAGTTGGTTTGTTTTTGTGCGTGCGGGAGCAGGAAATGCCCCCCGA
TTTCCGCTTTCCTACCACAACCCGTTTCCTCAACGTCTTCCATCCCTTGG
ACCCTATTGCCTATCGGCTGGAGCCCCTCCTCCAGCCCGCCCTTTCGCAG
CTGCCTCCTGCGTTAGTTCCCCATCATGAGGGTGCTGGCAGCAAGACATT
CGTCACAAAAGCGCGGGAACAGAAGCGGCTGGTCTCGGGCTCGCTGTCCG
CCTTGTCGTTGAGCGTCTCGGCGGGCGCTAAGAGCTTGATGGGCTCCCTT
TCCAGCCTGACCATGACCAAGCCTGCATTTTCCCCTGGCGGATACCAGGA
GATGCTCACACTGGATACAAGCAACAAGAATGGAGCTGATCTTATAGGCA
TGAGCCCGCCTGTTGGCATCGTGGAGGATGAGGAAGTCGCCAAGGAGGTG
CCAGACGTGGCTTCTTTGCGTATTAATAACGGACAACGAGTGGACTATGC
ACTGCAGGAGATGGTGTCGGAGCAGATCAACGAGTACGTGTCTTCGATTG
CCGCACACTCTTGCTACTTTGCCTCCCCCGATGTGGCCTACTTTATCACA
CAGCTGGTGTACGACAAGGCCGCTTCTGGCGACACGGGGATCCCGGATAT
CACGGACGGTGATGGAAAGGAAGTGATGGCGAGCGAAAAGGAAGAAGGAA
GATAG

Coding sequence (CDS) from alignment at scaffold_9:648115..649269+

>mRNA_4796 ID=mRNA_4796|Name=jgi.p|Nanoce1779_2|565564|organism=Nannochloropsis oceanica|type=CDS|length=1155bp|location=Sequence derived from alignment at scaffold_9:648115..649269+ (Nannochloropsis oceanica)
ATGACGAGGCAAAAGAAAACCCGCACGGAGTTTCTCCCCATCGAGTGGTT
CGATATCTTGAGGGGCGACACCGCAGACGAGCAAGGAGACGTGATGCGGC
GCATTCAGCGCGTGACCCTCGACACGGTGCCTCTCTTCCGGCAGCTCGCG
AATGACTGCGTTCTCGACGTCCTTCTGTATATGAACCCTCGTTACCGGCA
GAAAATAGTGACCGCCGTGGCCAACCGCATCAATGCCGCGTACGCCTTAT
TTTGCGAGCACCATCCGGGTTTTCATGGCAATAAAAAGGTATCGGTCATC
GGCCATTCCCTTGGCTCTGTGGTTCTCTTTGATTTGCTTGCACATCAGAC
GTCAGCCCACCAAGAGGACGAGCCCCTCCTGTCGCCCACGGACGTGCACA
TTGACTTTCCCCTATTGACCTTCCCAGTGGATATGTTTCTCACGCTCGGC
TCACCAGTTGGTTTGTTTTTGTGCGTGCGGGAGCAGGAAATGCCCCCCGA
TTTCCGCTTTCCTACCACAACCCGTTTCCTCAACGTCTTCCATCCCTTGG
ACCCTATTGCCTATCGGCTGGAGCCCCTCCTCCAGCCCGCCCTTTCGCAG
CTGCCTCCTGCGTTAGTTCCCCATCATGAGGGTGCTGGCAGCAAGACATT
CGTCACAAAAGCGCGGGAACAGAAGCGGCTGGTCTCGGGCTCGCTGTCCG
CCTTGTCGTTGAGCGTCTCGGCGGGCGCTAAGAGCTTGATGGGCTCCCTT
TCCAGCCTGACCATGACCAAGCCTGCATTTTCCCCTGGCGGATACCAGGA
GATGCTCACACTGGATACAAGCAACAAGAATGGAGCTGATCTTATAGGCA
TGAGCCCGCCTGTTGGCATCGTGGAGGATGAGGAAGTCGCCAAGGAGGTG
CCAGACGTGGCTTCTTTGCGTATTAATAACGGACAACGAGTGGACTATGC
ACTGCAGGAGATGGTGTCGGAGCAGATCAACGAGTACGTGTCTTCGATTG
CCGCACACTCTTGCTACTTTGCCTCCCCCGATGTGGCCTACTTTATCACA
CAGCTGGTGTACGACAAGGCCGCTTCTGGCGACACGGGGATCCCGGATAT
CACGGACGGTGATGGAAAGGAAGTGATGGCGAGCGAAAAGGAAGAAGGAA
GATAG

Synonyms

Publications