jgi.p|Nanoce1779_2|587921, mRNA_4795 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587921
Unique NamemRNA_4795
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1356
Alignment locationscaffold_9:643268..644623 -

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Properties
Property NameValue
TranscriptId588007
TrackFilteredModels2
ProteinId587921
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:643268..644623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587921gene_4795Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587921mRNA_4795-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4795CDS_4795Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4795 ID=mRNA_4795|Name=jgi.p|Nanoce1779_2|587921|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp
GCAAATGAAGATATGGAGATAGAGCAATTTATCAGGTCGGCAATCTTGAT
GCCAGGCCAGCCGCATATCTTGATATGTGATCCTGGGGAGGGGCAGAGGA
AGCCCAAGGAAGGCGAGGTGCTTGAGAGGAGGACGAATACTCCCCCCGCA
CCGTGGAAGAAGGCGGCAATGGACTGGTATATTGACGATGGGTTCTCGTT
TGCGACCAATCAGCTTATGCAAAGCTTTATGTTTCTGGACCATTTGCCAG
AGTACCAGTATGGGACGTTCTACCTTAAGGATAAAGTTACCGACCGGCCC
GCGGGATGGCACCCGGGACCTCATGGCCACCGGTTTAGGGCTGAGATTCT
GGCGTGGAATTACCTGGGTTTTTTTGAAAAGGCTTTGGCTGGAGTGCACG
AGAAAATTGCGGCGAAAGAGGCAGATCTATCGTCGTTACTACCGGAGAAG
TTGGTGGTGCCCCCGCCGACGCAATGCCAACCAGAGTTGTGTGGGGAATT
GGCGCAGTGCTCGACAAGTTTTGAGCCACGGGAGGGGGGCGGGTTGATGG
AGCGGGTGATTTTCCCAAAGGAAGTCCCGTTTGTTAAGGACTCGGAGCAG
GCGAGAACGAATGCGGTGAAGACATGGCACGAGCAACTGTATTTTGGTGA
CGTGGCAGCGGTCGACCACATGCTGGATAATGGGTGGAATTACCTTGATC
GGAAGTATATCATCCAAGGGGACAAAAACGCGGGTCCACTGCAATTGGAG
TTTGAAAGCACCACGGAAAATTACTTCGTGGTGTGCTCGGCCCCCGGGAA
TGCGTACCTGTGCAAGGAAGGGACGGTATGGAAGATAGATGATGAGGTGG
TCAGATGTTTGGACACTGAGGCGGCCAAGACTGCAGGGACGCCATTTGTG
GACGCACCGTGCTATATTTCGGATCGGAAAATCCCTGCAGGCAAGCATAT
TTTCGAGTTGGAGCGGCTAGCCAGTGATACCAAGGACGAAGGTACGTTGA
TGGGGTTTGGAAATGGGAGAGAGGGATGGACTGAGGACGGACAGAAGAGA
GCAAACAAGAGTGGGCATCCTCAGAATATCAAACTTACCTGCAAAACTTA
CGCACACATACAAAGGTGATCCTTTCATTCCGCTGTCGCACCTGATCTGG
TGGTAGGGATTGGATAAAACAGGACGAGCCGCAAATGAGAGACATGGAGT
AGCAAAGGGGTCATGGAGGAACAAGAGAATAAATTACAATAACCATAAAA
TGTATGGTTGTAGATCATAAATTAAGTAGTTAAAGAAAAATATAATGCAT
ACCTCCGTACATGTTGAATCGAGGAAACCCGCCATGTGTGAATGAGGGCA
TTTTTG
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protein sequence of jgi.p|Nanoce1779_2|587921

>mRNA_4795-protein ID=mRNA_4795-protein|Name=jgi.p|Nanoce1779_2|587921|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MEIEQFIRSAILMPGQPHILICDPGEGQRKPKEGEVLERRTNTPPAPWKK
AAMDWYIDDGFSFATNQLMQSFMFLDHLPEYQYGTFYLKDKVTDRPAGWH
PGPHGHRFRAEILAWNYLGFFEKALAGVHEKIAAKEADLSSLLPEKLVVP
PPTQCQPELCGELAQCSTSFEPREGGGLMERVIFPKEVPFVKDSEQARTN
AVKTWHEQLYFGDVAAVDHMLDNGWNYLDRKYIIQGDKNAGPLQLEFEST
TENYFVVCSAPGNAYLCKEGTVWKIDDEVVRCLDTEAAKTAGTPFVDAPC
YISDRKIPAGKHIFELERLASDTKDEGTLMGFGNGREGWTEDGQKRANKS
GHPQNIKLTCKTYAHIQR*
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mRNA from alignment at scaffold_9:643268..644623-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4795 ID=mRNA_4795|Name=jgi.p|Nanoce1779_2|587921|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp|location=Sequence derived from alignment at scaffold_9:643268..644623- (Nannochloropsis oceanica)
GCAAATGAAGATATGGAGATAGAGCAATTTATCAGGTCGGCAATCTTGAT
GCCAGGCCAGCCGCATATCTTGATATGTGATCCTGGGGAGGGGCAGAGGA
AGCCCAAGGAAGGCGAGGTGCTTGAGAGGAGGACGAATACTCCCCCCGCA
CCGTGGAAGAAGGCGGCAATGGACTGGTATATTGACGATGGGTTCTCGTT
TGCGACCAATCAGCTTATGCAAAGCTTTATGTTTCTGGACCATTTGCCAG
AGTACCAGTATGGGACGTTCTACCTTAAGGATAAAGTTACCGACCGGCCC
GCGGGATGGCACCCGGGACCTCATGGCCACCGGTTTAGGGCTGAGATTCT
GGCGTGGAATTACCTGGGTTTTTTTGAAAAGGCTTTGGCTGGAGTGCACG
AGAAAATTGCGGCGAAAGAGGCAGATCTATCGTCGTTACTACCGGAGAAG
TTGGTGGTGCCCCCGCCGACGCAATGCCAACCAGAGTTGTGTGGGGAATT
GGCGCAGTGCTCGACAAGTTTTGAGCCACGGGAGGGGGGCGGGTTGATGG
AGCGGGTGATTTTCCCAAAGGAAGTCCCGTTTGTTAAGGACTCGGAGCAG
GCGAGAACGAATGCGGTGAAGACATGGCACGAGCAACTGTATTTTGGTGA
CGTGGCAGCGGTCGACCACATGCTGGATAATGGGTGGAATTACCTTGATC
GGAAGTATATCATCCAAGGGGACAAAAACGCGGGTCCACTGCAATTGGAG
TTTGAAAGCACCACGGAAAATTACTTCGTGGTGTGCTCGGCCCCCGGGAA
TGCGTACCTGTGCAAGGAAGGGACGGTATGGAAGATAGATGATGAGGTGG
TCAGATGTTTGGACACTGAGGCGGCCAAGACTGCAGGGACGCCATTTGTG
GACGCACCGTGCTATATTTCGGATCGGAAAATCCCTGCAGGCAAGCATAT
TTTCGAGTTGGAGCGGCTAGCCAGTGATACCAAGGACGAAGGTACGTTGA
TGGGGTTTGGAAATGGGAGAGAGGGATGGACTGAGGACGGACAGAAGAGA
GCAAACAAGAGTGGGCATCCTCAGAATATCAAACTTACCTGCAAAACTTA
CGCACACATACAAAGGTGATCCTTTCATTCCGCTGTCGCACCTGATCTGG
TGGTAGGGATTGGATAAAACAGGACGAGCCGCAAATGAGAGACATGGAGT
AGCAAAGGGGTCATGGAGGAACAAGAGAATAAATTACAATAACCATAAAA
TGTATGGTTGTAGATCATAAATTAAGTAGTTAAAGAAAAATATAATGCAT
ACCTCCGTACATGTTGAATCGAGGAAACCCGCCATGTGTGAATGAGGGCA
TTTTTG
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Coding sequence (CDS) from alignment at scaffold_9:643268..644623-

>mRNA_4795 ID=mRNA_4795|Name=jgi.p|Nanoce1779_2|587921|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_9:643268..644623- (Nannochloropsis oceanica)
ATGGAGATAGAGCAATTTATCAGGTCGGCAATCTTGATGCCAGGCCAGCC
GCATATCTTGATATGTGATCCTGGGGAGGGGCAGAGGAAGCCCAAGGAAG
GCGAGGTGCTTGAGAGGAGGACGAATACTCCCCCCGCACCGTGGAAGAAG
GCGGCAATGGACTGGTATATTGACGATGGGTTCTCGTTTGCGACCAATCA
GCTTATGCAAAGCTTTATGTTTCTGGACCATTTGCCAGAGTACCAGTATG
GGACGTTCTACCTTAAGGATAAAGTTACCGACCGGCCCGCGGGATGGCAC
CCGGGACCTCATGGCCACCGGTTTAGGGCTGAGATTCTGGCGTGGAATTA
CCTGGGTTTTTTTGAAAAGGCTTTGGCTGGAGTGCACGAGAAAATTGCGG
CGAAAGAGGCAGATCTATCGTCGTTACTACCGGAGAAGTTGGTGGTGCCC
CCGCCGACGCAATGCCAACCAGAGTTGTGTGGGGAATTGGCGCAGTGCTC
GACAAGTTTTGAGCCACGGGAGGGGGGCGGGTTGATGGAGCGGGTGATTT
TCCCAAAGGAAGTCCCGTTTGTTAAGGACTCGGAGCAGGCGAGAACGAAT
GCGGTGAAGACATGGCACGAGCAACTGTATTTTGGTGACGTGGCAGCGGT
CGACCACATGCTGGATAATGGGTGGAATTACCTTGATCGGAAGTATATCA
TCCAAGGGGACAAAAACGCGGGTCCACTGCAATTGGAGTTTGAAAGCACC
ACGGAAAATTACTTCGTGGTGTGCTCGGCCCCCGGGAATGCGTACCTGTG
CAAGGAAGGGACGGTATGGAAGATAGATGATGAGGTGGTCAGATGTTTGG
ACACTGAGGCGGCCAAGACTGCAGGGACGCCATTTGTGGACGCACCGTGC
TATATTTCGGATCGGAAAATCCCTGCAGGCAAGCATATTTTCGAGTTGGA
GCGGCTAGCCAGTGATACCAAGGACGAAGGTACGTTGATGGGGTTTGGAA
ATGGGAGAGAGGGATGGACTGAGGACGGACAGAAGAGAGCAAACAAGAGT
GGGCATCCTCAGAATATCAAACTTACCTGCAAAACTTACGCACACATACA
AAGGTGA
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Synonyms
Publications