|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 588006 |
| Track | FilteredModels2 |
| ProteinId | 587920 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:640838..643190 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4794 ID=mRNA_4794|Name=jgi.p|Nanoce1779_2|587920|organism=Nannochloropsis oceanica|type=mRNA|length=1834bp
AATAGGTAGGCCCAAGGATACTCTTCACGTACTGCGACGAGGAGAATTCG
TAGCTCTGGGCGTGGTGCCCAAAATCTCAGGTGGCCTGGTCATAGGAAGT
CAAGTTCAGCAGCAGCAGCAGCGCGACAGCAGCAATAGCATGACGACCGC
ATATGCCGGGGCTGGCCTCCGGTGGGCCTTTCAGGCGCTAAATGTGCGCA
ATGAGGTGGTAGGCGTCATGGAGGAGATGCTGGCCACGATCGAGCATTGG
AAGCTAGTCAACGATATGGAATGCTCCCGGATTCAATATCTAGCCGAACA
TGCCAAGGTCTTACGCTTGCAACAGGCCATCGGAGAACTCGAAGCGGTCC
AAGCCCAACATGTTACAGAATCACTAGCGTTGAAAAAGACGGCCCGCCAG
GTCCGCGATCAATTTGTCGCTAACCTCCTGAGTGTCTCAAAGGAATTACG
CGCCACGCAACGACGGAACGAGGCGGTAGTCTCTCGGAAGGTGCCGACGT
TGGAGAAGGAGTTGGAGCATACCAAACAGTTGTTAAACGAGGCTCAGGAG
CGGTTGAGGGCGGCGGACGCCGAAAAAGATGCCGGGAGTACATCAAGAAA
TGATGCAGCAGGATCGAGACTTTTACTTACGAATGATGCTTGTGATGCGA
ATGGTGCTACGAACAGAAGCAGCAGTCCTTCTAAGTCCTCTCTACCGTCA
CCACTATCACCACCACCGTCCCTGCCCACGCCTCCATCTCTCCACACCCT
CCATGAAATCATCACCACTTTAGAAGAATCATTAGTTCTACGTGTGTTCA
GCTTTATGAACGCTTCCGATGTGCTGGCCATGTCTGAAGTCTGCAAGGCA
TTTAATGAGAGGATCGGATTGATTTTCGGACATAAGCACGAGGACGAGGA
CGGGGACGAGGGAGAGCGAGCGAAGGACGAAGAGGCAATTCTCACCACCA
GCACTGCCGTTGCTACTGTAGCAACTGCATCGGATTCTAACCCAGCAATC
CCTTCCCTCTCTCCTTCCTCTTCCTTCCTCAAGAACTACCTAGGGGGGAC
CGCCGATGTCCTCTCCTCGTCCTTCTCATCTCTCTTACCTCCCCCTTCCA
GCGCTGGTGCCATGGCCCGTTCCCTATTAGGCTCTCCTATTGAGACCCGT
AGCAGTTTCTCCGGGACCACCAGTAGTGGTGGTGCCCCACCTCTCGCGTC
GATGGCTAGTAAATTGACGAATGCGGAATTGAAGGGGATTCTAGCCTTGA
CCGAGCGAGTCAAGAAAATGGAGGCTTTAGTGGTTCAATTCCAGGTGGAG
AATGAGGATGTACGTGCACGGTTGGATCAAGCAGAAGGTGTGAGGGATCT
GTTGGTTGGGAAGTTGTCTGAGACGGAAAAGGAGGTCAAGAGCGCGAGAG
AGGTGGAGAATGACAAGGAGAGACAAAGGGTGGTAGATCATGAGGTAATT
GGTTTTTTAGATGGCAGGGTGCAGGAATTGGAAGGGGGCTTAAAGACGAC
GGTGGGGAGGTTGATTGAGGTGGAGGAGAAGGCGAGGAGGGAGGTGGCGC
AGTGGCAGGAGCAAGTGAGGATGTTGCAAGACATGTTGGGTTTTGAACGA
CGAAGGGCGGCGGAGAATGAGGGACAATGGCGGCAGCAGAAAAAGATTCT
GGCTAAGGAGGTGAAGAATTTGAGGAATGAGGTGCTCATGCGGCAAAAAG
AACGAGATGCGTATCGAGATGAGCTGCACAATGTCCGGCTTGGGGGTGGA
GGTGGAGGGATTCTCCCGTCCCCTTCGCAGGCGTTTGAACACCTGCTCTC
CCTCCATCATGCTGCTTAAGACAGTGCCATAACC back to topprotein sequence of jgi.p|Nanoce1779_2|587920 >mRNA_4794-protein ID=mRNA_4794-protein|Name=jgi.p|Nanoce1779_2|587920|organism=Nannochloropsis oceanica|type=polypeptide|length=560bp
MTTAYAGAGLRWAFQALNVRNEVVGVMEEMLATIEHWKLVNDMECSRIQY
LAEHAKVLRLQQAIGELEAVQAQHVTESLALKKTARQVRDQFVANLLSVS
KELRATQRRNEAVVSRKVPTLEKELEHTKQLLNEAQERLRAADAEKDAGS
TSRNDAAGSRLLLTNDACDANGATNRSSSPSKSSLPSPLSPPPSLPTPPS
LHTLHEIITTLEESLVLRVFSFMNASDVLAMSEVCKAFNERIGLIFGHKH
EDEDGDEGERAKDEEAILTTSTAVATVATASDSNPAIPSLSPSSSFLKNY
LGGTADVLSSSFSSLLPPPSSAGAMARSLLGSPIETRSSFSGTTSSGGAP
PLASMASKLTNAELKGILALTERVKKMEALVVQFQVENEDVRARLDQAEG
VRDLLVGKLSETEKEVKSAREVENDKERQRVVDHEVIGFLDGRVQELEGG
LKTTVGRLIEVEEKARREVAQWQEQVRMLQDMLGFERRRAAENEGQWRQQ
KKILAKEVKNLRNEVLMRQKERDAYRDELHNVRLGGGGGGILPSPSQAFE
HLLSLHHAA* back to topmRNA from alignment at scaffold_9:640838..643190- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4794 ID=mRNA_4794|Name=jgi.p|Nanoce1779_2|587920|organism=Nannochloropsis oceanica|type=mRNA|length=2353bp|location=Sequence derived from alignment at scaffold_9:640838..643190- (Nannochloropsis oceanica)
AATAGGTAGGCCCAAGGATACTCTTCACGTACTGCGACGAGGAGAATTCG
TAGCTCTGGGCGTGGTGCCCAAAATCTCAGGTGGCCTGGTCATAGGAAGT
CAAGTTCAGCAGCAGCAGCAGCGCGACAGCAGCAATAGCATGACGACCGC
ATATGCCGGGGCTGGCCTCCGGTGGGCCTTTCAGGCGCTAAATGTGCGCA
ATGAGGTGGTAGGCGTCATGGAGGAGATGCTGGCCACGATCGAGGTACGT
GTGTACGTGTACGTACCATGGAGGGGAACACGAGAAGCAGCATTCCTGCG
CAACACACTCACCCAAATCTCTCCTTCACACCCACATTATACCCCACACA
GCATTGGAAGCTAGTCAACGATATGGAATGCTCCCGGATTCAATATCTAG
CCGAACATGCCAAGGTCTTACGCTTGCAACAGGCCATCGGAGAACTCGAA
GCGGTCCAAGCCCAACATGTTACAGAATCACTAGCGTTGAAAAAGACGGC
CCGCCAGGTCCGCGATCAATTTGTCGCTAACCTCCTGAGTGTCTCAAAGG
AATTACGCGCCACGCAACGACGGAACGAGGCGGTAGTCTCTCGGAAGGTG
CCGACGTTGGAGAAGGAGTTGGAGCATACCAAACAGTTGTTAAACGAGGC
TCAGGAGCGGTTGAGGGCGGCGGACGCCGAAAAAGATGCCGGGAGTACAT
CAAGAAATGATGCAGCAGGATCGAGACTTTTACTTACGAATGATGCTTGT
GATGCGAATGGTGCTACGAACAGAAGCAGCAGTCCTTCTAAGTCCTCTCT
ACCGTCACCACTATCACCACCACCGTCCCTGCCCACGCCTCCATCTCTCC
ACACCCTCCATGAAATCATCACCACTTTAGAAGAATCATTAGTTCTACGT
GTGTTCAGCTTTATGAACGCTTCCGATGTGCTGGCCATGTCTGAAGTCTG
CAAGGCATTTAATGAGAGGATCGGATTGATTTTCGGACATAAGCACGAGG
ACGAGGACGGGGACGAGGGAGAGCGAGCGAAGGACGAAGAGGCAATTCTC
ACCACCAGCACTGCCGTTGCTACTGTAGCAACTGCATCGGATTCTAACCC
AGCAATCCCTTCCCTCTCTCCTTCCTCTTCCTTCCTCAAGAACTACCTAG
GGGGGACCGCCGATGTCCTCTCCTCGTCCTTCTCATCTCTCTTACCTCCC
CCTTCCAGCGCTGGTGCCATGGCCCGTTCCCTATTAGGCTCTCCTATTGA
GACCCGTAGCAGTTTCTCCGGGACCACCAGTAGTGGTGGTGCCCCACCTC
TCGCGTCGATGGCTAGTAAATTGACGAATGCGGAATTGAAGGGGATTCTA
GCCTTGACCGAGCGAGTCAAGAAAATGGAGGCTTTAGTGGTTCAATTCCA
GGTGGAGAATGAGGATGTACGTGCACGGTTGGATCAAGCAGAAGGTGTGA
GGGATCTGTTGGTTGGGAAGTTGTCTGAGACGGAAAAGGAGGTCAAGAGC
GCGAGAGAGGTGGAGAATGACAAGGAGAGACAAAGGGTGGTAGATCATGA
GGTAATTGGTTTTTTAGATGGCAGGGTGCAGGAATTGGAAGGGGGCTTAA
AGACGACGGTGGGGAGGTTGATTGAGGTGGAGGAGAAGGCGAGGAGGGAG
GTGGCGCAGTGGCAGGAGCAAGTGAGGATGTTGCAAGACATGTTGGGTTT
TGAACGACGAAGGGCGGCGGAGAATGAGGGACAATGGCGGCAGCAGAAAA
AGATTCTGGCTAAGGAGGTGAAGAATTTGAGGAATGAGGTGCTCATGCGG
CAAAAAGAACGAGATGCGTATCGAGATGAGCTGCACAATGTCCGGCTTGG
GGGTGGAGGTGGAGGGGTAAGTGGGGGAGGGGGGGGGCAGTCAAGGCGAT
GACTGTATGTGATAGGGAAAGAATATGTACAATGCTAAAGCAGAGAATAG
GATGAAAGAAAAAAAACTCATATTGTTACTCGACTGTCTTTTGGGGATGG
GGTTCTTATTCGGTCGGTTACAGATCTACGCAAGGCCCCCCACAAAATGA
GTGACATGAAACTAGACCGACCCCTGGAGGCCATGATGGAGTATCTGAGT
AGCAACCCACACATGCAAAAATGTTGTAATCAAATGCTTATTGTCTCCCA
TATTCTCCCGCTAGCACATTCCCAACGCTACAAGGGGGCTGGAGCGCTAA
GCAGCCGCCTCCCCTCTAAGCCATAGCGCAAACCACCATACATTCCTTGG
TCATGTGCATCACGCTCACTCCTTTCAGATTCTCCCGTCCCCTTCGCAGG
CGTTTGAACACCTGCTCTCCCTCCATCATGCTGCTTAAGACAGTGCCATA
ACC back to topCoding sequence (CDS) from alignment at scaffold_9:640838..643190- >mRNA_4794 ID=mRNA_4794|Name=jgi.p|Nanoce1779_2|587920|organism=Nannochloropsis oceanica|type=CDS|length=5040bp|location=Sequence derived from alignment at scaffold_9:640838..643190- (Nannochloropsis oceanica)
ATTCTCCCGTCCCCTTCGCAGGCGTTTGAACACCTGCTCTCCCTCCATCA
TGCTGCTTAACATTGGAAGCTAGTCAACGATATGGAATGCTCCCGGATTC
AATATCTAGCCGAACATGCCAAGGTCTTACGCTTGCAACAGGCCATCGGA
GAACTCGAAGCGGTCCAAGCCCAACATGTTACAGAATCACTAGCGTTGAA
AAAGACGGCCCGCCAGGTCCGCGATCAATTTGTCGCTAACCTCCTGAGTG
TCTCAAAGGAATTACGCGCCACGCAACGACGGAACGAGGCGGTAGTCTCT
CGGAAGGTGCCGACGTTGGAGAAGGAGTTGGAGCATACCAAACAGTTGTT
AAACGAGGCTCAGGAGCGGTTGAGGGCGGCGGACGCCGAAAAAGATGCCG
GGAGTACATCAAGAAATGATGCAGCAGGATCGAGACTTTTACTTACGAAT
GATGCTTGTGATGCGAATGGTGCTACGAACAGAAGCAGCAGTCCTTCTAA
GTCCTCTCTACCGTCACCACTATCACCACCACCGTCCCTGCCCACGCCTC
CATCTCTCCACACCCTCCATGAAATCATCACCACTTTAGAAGAATCATTA
GTTCTACGTGTGTTCAGCTTTATGAACGCTTCCGATGTGCTGGCCATGTC
TGAAGTCTGCAAGGCATTTAATGAGAGGATCGGATTGATTTTCGGACATA
AGCACGAGGACGAGGACGGGGACGAGGGAGAGCGAGCGAAGGACGAAGAG
GCAATTCTCACCACCAGCACTGCCGTTGCTACTGTAGCAACTGCATCGGA
TTCTAACCCAGCAATCCCTTCCCTCTCTCCTTCCTCTTCCTTCCTCAAGA
ACTACCTAGGGGGGACCGCCGATGTCCTCTCCTCGTCCTTCTCATCTCTC
TTACCTCCCCCTTCCAGCGCTGGTGCCATGGCCCGTTCCCTATTAGGCTC
TCCTATTGAGACCCGTAGCAGTTTCTCCGGGACCACCAGTAGTGGTGGTG
CCCCACCTCTCGCGTCGATGGCTAGTAAATTGACGAATGCGGAATTGAAG
GGGATTCTAGCCTTGACCGAGCGAGTCAAGAAAATGGAGGCTTTAGTGGT
TCAATTCCAGGTGGAGAATGAGGATGTACGTGCACGGTTGGATCAAGCAG
AAGGTGTGAGGGATCTGTTGGTTGGGAAGTTGTCTGAGACGGAAAAGGAG
GTCAAGAGCGCGAGAGAGGTGGAGAATGACAAGGAGAGACAAAGGGTGGT
AGATCATGAGGTAATTGGTTTTTTAGATGGCAGGGTGCAGGAATTGGAAG
GGGGCTTAAAGACGACGGTGGGGAGGTTGATTGAGGTGGAGGAGAAGGCG
AGGAGGGAGGTGGCGCAGTGGCAGGAGCAAGTGAGGATGTTGCAAGACAT
GTTGGGTTTTGAACGACGAAGGGCGGCGGAGAATGAGGGACAATGGCGGC
AGCAGAAAAAGATTCTGGCTAAGGAGGTGAAGAATTTGAGGAATGAGGTG
CTCATGCGGCAAAAAGAACGAGATGCGTATCGAGATGAGCTGCACAATGT
CCGGCTTGGGGGTGGAGGTGGAGGGATGACGACCGCATATGCCGGGGCTG
GCCTCCGGTGGGCCTTTCAGGCGCTAAATGTGCGCAATGAGGTGGTAGGC
GTCATGGAGGAGATGCTGGCCACGATCGAGATTCTCCCGTCCCCTTCGCA
GGCGTTTGAACACCTGCTCTCCCTCCATCATGCTGCTTAACATTGGAAGC
TAGTCAACGATATGGAATGCTCCCGGATTCAATATCTAGCCGAACATGCC
AAGGTCTTACGCTTGCAACAGGCCATCGGAGAACTCGAAGCGGTCCAAGC
CCAACATGTTACAGAATCACTAGCGTTGAAAAAGACGGCCCGCCAGGTCC
GCGATCAATTTGTCGCTAACCTCCTGAGTGTCTCAAAGGAATTACGCGCC
ACGCAACGACGGAACGAGGCGGTAGTCTCTCGGAAGGTGCCGACGTTGGA
GAAGGAGTTGGAGCATACCAAACAGTTGTTAAACGAGGCTCAGGAGCGGT
TGAGGGCGGCGGACGCCGAAAAAGATGCCGGGAGTACATCAAGAAATGAT
GCAGCAGGATCGAGACTTTTACTTACGAATGATGCTTGTGATGCGAATGG
TGCTACGAACAGAAGCAGCAGTCCTTCTAAGTCCTCTCTACCGTCACCAC
TATCACCACCACCGTCCCTGCCCACGCCTCCATCTCTCCACACCCTCCAT
GAAATCATCACCACTTTAGAAGAATCATTAGTTCTACGTGTGTTCAGCTT
TATGAACGCTTCCGATGTGCTGGCCATGTCTGAAGTCTGCAAGGCATTTA
ATGAGAGGATCGGATTGATTTTCGGACATAAGCACGAGGACGAGGACGGG
GACGAGGGAGAGCGAGCGAAGGACGAAGAGGCAATTCTCACCACCAGCAC
TGCCGTTGCTACTGTAGCAACTGCATCGGATTCTAACCCAGCAATCCCTT
CCCTCTCTCCTTCCTCTTCCTTCCTCAAGAACTACCTAGGGGGGACCGCC
GATGTCCTCTCCTCGTCCTTCTCATCTCTCTTACCTCCCCCTTCCAGCGC
TGGTGCCATGGCCCGTTCCCTATTAGGCTCTCCTATTGAGACCCGTAGCA
GTTTCTCCGGGACCACCAGTAGTGGTGGTGCCCCACCTCTCGCGTCGATG
GCTAGTAAATTGACGAATGCGGAATTGAAGGGGATTCTAGCCTTGACCGA
GCGAGTCAAGAAAATGGAGGCTTTAGTGGTTCAATTCCAGGTGGAGAATG
AGGATGTACGTGCACGGTTGGATCAAGCAGAAGGTGTGAGGGATCTGTTG
GTTGGGAAGTTGTCTGAGACGGAAAAGGAGGTCAAGAGCGCGAGAGAGGT
GGAGAATGACAAGGAGAGACAAAGGGTGGTAGATCATGAGGTAATTGGTT
TTTTAGATGGCAGGGTGCAGGAATTGGAAGGGGGCTTAAAGACGACGGTG
GGGAGGTTGATTGAGGTGGAGGAGAAGGCGAGGAGGGAGGTGGCGCAGTG
GCAGGAGCAAGTGAGGATGTTGCAAGACATGTTGGGTTTTGAACGACGAA
GGGCGGCGGAGAATGAGGGACAATGGCGGCAGCAGAAAAAGATTCTGGCT
AAGGAGGTGAAGAATTTGAGGAATGAGGTGCTCATGCGGCAAAAAGAACG
AGATGCGTATCGAGATGAGCTGCACAATGTCCGGCTTGGGGGTGGAGGTG
GAGGGATGACGACCGCATATGCCGGGGCTGGCCTCCGGTGGGCCTTTCAG
GCGCTAAATGTGCGCAATGAGGTGGTAGGCGTCATGGAGGAGATGCTGGC
CACGATCGAGATTCTCCCGTCCCCTTCGCAGGCGTTTGAACACCTGCTCT
CCCTCCATCATGCTGCTTAACATTGGAAGCTAGTCAACGATATGGAATGC
TCCCGGATTCAATATCTAGCCGAACATGCCAAGGTCTTACGCTTGCAACA
GGCCATCGGAGAACTCGAAGCGGTCCAAGCCCAACATGTTACAGAATCAC
TAGCGTTGAAAAAGACGGCCCGCCAGGTCCGCGATCAATTTGTCGCTAAC
CTCCTGAGTGTCTCAAAGGAATTACGCGCCACGCAACGACGGAACGAGGC
GGTAGTCTCTCGGAAGGTGCCGACGTTGGAGAAGGAGTTGGAGCATACCA
AACAGTTGTTAAACGAGGCTCAGGAGCGGTTGAGGGCGGCGGACGCCGAA
AAAGATGCCGGGAGTACATCAAGAAATGATGCAGCAGGATCGAGACTTTT
ACTTACGAATGATGCTTGTGATGCGAATGGTGCTACGAACAGAAGCAGCA
GTCCTTCTAAGTCCTCTCTACCGTCACCACTATCACCACCACCGTCCCTG
CCCACGCCTCCATCTCTCCACACCCTCCATGAAATCATCACCACTTTAGA
AGAATCATTAGTTCTACGTGTGTTCAGCTTTATGAACGCTTCCGATGTGC
TGGCCATGTCTGAAGTCTGCAAGGCATTTAATGAGAGGATCGGATTGATT
TTCGGACATAAGCACGAGGACGAGGACGGGGACGAGGGAGAGCGAGCGAA
GGACGAAGAGGCAATTCTCACCACCAGCACTGCCGTTGCTACTGTAGCAA
CTGCATCGGATTCTAACCCAGCAATCCCTTCCCTCTCTCCTTCCTCTTCC
TTCCTCAAGAACTACCTAGGGGGGACCGCCGATGTCCTCTCCTCGTCCTT
CTCATCTCTCTTACCTCCCCCTTCCAGCGCTGGTGCCATGGCCCGTTCCC
TATTAGGCTCTCCTATTGAGACCCGTAGCAGTTTCTCCGGGACCACCAGT
AGTGGTGGTGCCCCACCTCTCGCGTCGATGGCTAGTAAATTGACGAATGC
GGAATTGAAGGGGATTCTAGCCTTGACCGAGCGAGTCAAGAAAATGGAGG
CTTTAGTGGTTCAATTCCAGGTGGAGAATGAGGATGTACGTGCACGGTTG
GATCAAGCAGAAGGTGTGAGGGATCTGTTGGTTGGGAAGTTGTCTGAGAC
GGAAAAGGAGGTCAAGAGCGCGAGAGAGGTGGAGAATGACAAGGAGAGAC
AAAGGGTGGTAGATCATGAGGTAATTGGTTTTTTAGATGGCAGGGTGCAG
GAATTGGAAGGGGGCTTAAAGACGACGGTGGGGAGGTTGATTGAGGTGGA
GGAGAAGGCGAGGAGGGAGGTGGCGCAGTGGCAGGAGCAAGTGAGGATGT
TGCAAGACATGTTGGGTTTTGAACGACGAAGGGCGGCGGAGAATGAGGGA
CAATGGCGGCAGCAGAAAAAGATTCTGGCTAAGGAGGTGAAGAATTTGAG
GAATGAGGTGCTCATGCGGCAAAAAGAACGAGATGCGTATCGAGATGAGC
TGCACAATGTCCGGCTTGGGGGTGGAGGTGGAGGGATGACGACCGCATAT
GCCGGGGCTGGCCTCCGGTGGGCCTTTCAGGCGCTAAATGTGCGCAATGA
GGTGGTAGGCGTCATGGAGGAGATGCTGGCCACGATCGAG back to top
|