jgi.p|Nanoce1779_2|443197, mRNA_4793 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|443197
Unique NamemRNA_4793
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1600
Alignment locationscaffold_9:638505..640104 -

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Properties
Property NameValue
TranscriptId443283
TrackFilteredModels2
ProteinId443197
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:638505..640104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|443197gene_4793Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|443197mRNA_4793-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4793CDS_4793Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4793 ID=mRNA_4793|Name=jgi.p|Nanoce1779_2|443197|organism=Nannochloropsis oceanica|type=mRNA|length=1600bp
TGGGATGAAGCCCGGGCATAATAAAGATCTAGTATATATAAATAGATGGT
AATAAGCGTCAGTGGCAATCAATTGTTGGTATCGAGAAAATTGGAAAAAA
AGATCCCACACCTGACCCCCTGGAGGCCTCAATATTGCTATGGTACGCCC
GCCGCGTCGGGTAGAAATCGACCTGCACGAAGGCCGTGCCTTTTGCTTTC
ATGCTCTGGAAGCAGGACCGGCACTTTGCCAGGCCCTGATTACTTGTTGC
CGCCGCAACTGGCGTATTTCTTCTTTATCCTTTATCCGATCGCCCGTGCT
TCGACATGGCTTCGACAGATAATCATCATGCTCTTCACACGCTGACGTAC
GCCCTACAACTCACTTACCCTGAAGTGGTCTTACAATGCCTCCGCCCCTC
CTCCCCCGCCGCCGCCTGCTGATGCAGCTCCTGGTCATAGCCAGTATTAC
CCACGCCTTCTTCCTGCCTTTCCCGCGACGAACGCTACCAACGCCGCAGG
CCACCACCACGCCCGCCAGTACGCCTACTATAATCACTTCCGAGGAGGCC
TTTGGAGCACGAACGAAACGTATTCTCGACGGCATCGTAGCGGATGCCGA
TGCGTCAGGCGGAGCTGGCTCCTCAATTTCCTTTTCCACCCTCCAGGCCA
TTGATCGTGCGTGGGACGCGGTCAAGACGGGGCGGGCCGCCAGGGAGGCT
CCAACATTTGTCCGCGAGACTGACAACCTCTTACCAAATACGCCGCAATT
CGACGTTGTAATTGCTGGGGGGACATTGGGCATTTTTATGGCAACAGCAT
TGCAGAAAAGGGGGTTTAAGGTTTGTGTTGTGGAAAGGGGTCCCTTAAAA
GGACGTACGCAGGAATGGAATATTTCGAGGAAGGAGATGATGGAGTTGGT
GGAGGAAGGGGTGCTGAGCGAGGAAGACGTGGAAGCAGCGATTGGAATCG
ATTTCAATCCGATTCGGGTGGGGTTTGTGGGCGAAAATGACGAGCCGTAC
ACGTTATGGACGAAGGATGTGTTGCACTTGGGTGTGTATCCCTCCGTGTT
GCTTGCACGGGCACAAGCAAGATTTTGGGCGGCTGGGGGGGTTGTGAGAG
AAAACACACCCATCAAGGGAGTGAAAATTGCGTCAAATGGTGCGGCAATT
GAGTTGGAGGGAGAGGGGATGGAGGATATAACAGGGAGGTTGTTGATTGA
TTGTATGGGGAATCAGAGCCCTATTTCCAGGCAATCGCGCGCTGGGCAGC
AACCGGACGGGATTTGTATCGTTGTGGGAACGATGGCCTCGGGCTTTGCC
CCCGAAAATAATACGTATGCAGACTTGCTGTATAGCAACACGCCAACGCT
TGATAAGGGCAAGTCGCAGGTGCATTGGTTTTGGGAGGCCTTCCCTGCTA
GCTCGGGGAAGGAGGACCGGACGACGTATTTGTTTATGTATTGTGATGCC
AAGCCGGAGCGTCCGTCGATACTGGAGTGTTTTGAGGTACATATGTAAGC
TGGGACTTTGGGGGGGAGGGGAAGAGGGAAGATTATCTTACACAGACACC
TCTCTCCTCCTTTCTTCTTTAATTGCTCTCGTATTCACTTATTCCTCTCT
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protein sequence of jgi.p|Nanoce1779_2|443197

>mRNA_4793-protein ID=mRNA_4793-protein|Name=jgi.p|Nanoce1779_2|443197|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MPPPLLPRRRLLMQLLVIASITHAFFLPFPRRTLPTPQATTTPASTPTII
TSEEAFGARTKRILDGIVADADASGGAGSSISFSTLQAIDRAWDAVKTGR
AAREAPTFVRETDNLLPNTPQFDVVIAGGTLGIFMATALQKRGFKVCVVE
RGPLKGRTQEWNISRKEMMELVEEGVLSEEDVEAAIGIDFNPIRVGFVGE
NDEPYTLWTKDVLHLGVYPSVLLARAQARFWAAGGVVRENTPIKGVKIAS
NGAAIELEGEGMEDITGRLLIDCMGNQSPISRQSRAGQQPDGICIVVGTM
ASGFAPENNTYADLLYSNTPTLDKGKSQVHWFWEAFPASSGKEDRTTYLF
MYCDAKPERPSILECFEVHM*
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mRNA from alignment at scaffold_9:638505..640104-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4793 ID=mRNA_4793|Name=jgi.p|Nanoce1779_2|443197|organism=Nannochloropsis oceanica|type=mRNA|length=1600bp|location=Sequence derived from alignment at scaffold_9:638505..640104- (Nannochloropsis oceanica)
TGGGATGAAGCCCGGGCATAATAAAGATCTAGTATATATAAATAGATGGT
AATAAGCGTCAGTGGCAATCAATTGTTGGTATCGAGAAAATTGGAAAAAA
AGATCCCACACCTGACCCCCTGGAGGCCTCAATATTGCTATGGTACGCCC
GCCGCGTCGGGTAGAAATCGACCTGCACGAAGGCCGTGCCTTTTGCTTTC
ATGCTCTGGAAGCAGGACCGGCACTTTGCCAGGCCCTGATTACTTGTTGC
CGCCGCAACTGGCGTATTTCTTCTTTATCCTTTATCCGATCGCCCGTGCT
TCGACATGGCTTCGACAGATAATCATCATGCTCTTCACACGCTGACGTAC
GCCCTACAACTCACTTACCCTGAAGTGGTCTTACAATGCCTCCGCCCCTC
CTCCCCCGCCGCCGCCTGCTGATGCAGCTCCTGGTCATAGCCAGTATTAC
CCACGCCTTCTTCCTGCCTTTCCCGCGACGAACGCTACCAACGCCGCAGG
CCACCACCACGCCCGCCAGTACGCCTACTATAATCACTTCCGAGGAGGCC
TTTGGAGCACGAACGAAACGTATTCTCGACGGCATCGTAGCGGATGCCGA
TGCGTCAGGCGGAGCTGGCTCCTCAATTTCCTTTTCCACCCTCCAGGCCA
TTGATCGTGCGTGGGACGCGGTCAAGACGGGGCGGGCCGCCAGGGAGGCT
CCAACATTTGTCCGCGAGACTGACAACCTCTTACCAAATACGCCGCAATT
CGACGTTGTAATTGCTGGGGGGACATTGGGCATTTTTATGGCAACAGCAT
TGCAGAAAAGGGGGTTTAAGGTTTGTGTTGTGGAAAGGGGTCCCTTAAAA
GGACGTACGCAGGAATGGAATATTTCGAGGAAGGAGATGATGGAGTTGGT
GGAGGAAGGGGTGCTGAGCGAGGAAGACGTGGAAGCAGCGATTGGAATCG
ATTTCAATCCGATTCGGGTGGGGTTTGTGGGCGAAAATGACGAGCCGTAC
ACGTTATGGACGAAGGATGTGTTGCACTTGGGTGTGTATCCCTCCGTGTT
GCTTGCACGGGCACAAGCAAGATTTTGGGCGGCTGGGGGGGTTGTGAGAG
AAAACACACCCATCAAGGGAGTGAAAATTGCGTCAAATGGTGCGGCAATT
GAGTTGGAGGGAGAGGGGATGGAGGATATAACAGGGAGGTTGTTGATTGA
TTGTATGGGGAATCAGAGCCCTATTTCCAGGCAATCGCGCGCTGGGCAGC
AACCGGACGGGATTTGTATCGTTGTGGGAACGATGGCCTCGGGCTTTGCC
CCCGAAAATAATACGTATGCAGACTTGCTGTATAGCAACACGCCAACGCT
TGATAAGGGCAAGTCGCAGGTGCATTGGTTTTGGGAGGCCTTCCCTGCTA
GCTCGGGGAAGGAGGACCGGACGACGTATTTGTTTATGTATTGTGATGCC
AAGCCGGAGCGTCCGTCGATACTGGAGTGTTTTGAGGTACATATGTAAGC
TGGGACTTTGGGGGGGAGGGGAAGAGGGAAGATTATCTTACACAGACACC
TCTCTCCTCCTTTCTTCTTTAATTGCTCTCGTATTCACTTATTCCTCTCT
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Coding sequence (CDS) from alignment at scaffold_9:638505..640104-

>mRNA_4793 ID=mRNA_4793|Name=jgi.p|Nanoce1779_2|443197|organism=Nannochloropsis oceanica|type=CDS|length=1113bp|location=Sequence derived from alignment at scaffold_9:638505..640104- (Nannochloropsis oceanica)
ATGCCTCCGCCCCTCCTCCCCCGCCGCCGCCTGCTGATGCAGCTCCTGGT
CATAGCCAGTATTACCCACGCCTTCTTCCTGCCTTTCCCGCGACGAACGC
TACCAACGCCGCAGGCCACCACCACGCCCGCCAGTACGCCTACTATAATC
ACTTCCGAGGAGGCCTTTGGAGCACGAACGAAACGTATTCTCGACGGCAT
CGTAGCGGATGCCGATGCGTCAGGCGGAGCTGGCTCCTCAATTTCCTTTT
CCACCCTCCAGGCCATTGATCGTGCGTGGGACGCGGTCAAGACGGGGCGG
GCCGCCAGGGAGGCTCCAACATTTGTCCGCGAGACTGACAACCTCTTACC
AAATACGCCGCAATTCGACGTTGTAATTGCTGGGGGGACATTGGGCATTT
TTATGGCAACAGCATTGCAGAAAAGGGGGTTTAAGGTTTGTGTTGTGGAA
AGGGGTCCCTTAAAAGGACGTACGCAGGAATGGAATATTTCGAGGAAGGA
GATGATGGAGTTGGTGGAGGAAGGGGTGCTGAGCGAGGAAGACGTGGAAG
CAGCGATTGGAATCGATTTCAATCCGATTCGGGTGGGGTTTGTGGGCGAA
AATGACGAGCCGTACACGTTATGGACGAAGGATGTGTTGCACTTGGGTGT
GTATCCCTCCGTGTTGCTTGCACGGGCACAAGCAAGATTTTGGGCGGCTG
GGGGGGTTGTGAGAGAAAACACACCCATCAAGGGAGTGAAAATTGCGTCA
AATGGTGCGGCAATTGAGTTGGAGGGAGAGGGGATGGAGGATATAACAGG
GAGGTTGTTGATTGATTGTATGGGGAATCAGAGCCCTATTTCCAGGCAAT
CGCGCGCTGGGCAGCAACCGGACGGGATTTGTATCGTTGTGGGAACGATG
GCCTCGGGCTTTGCCCCCGAAAATAATACGTATGCAGACTTGCTGTATAG
CAACACGCCAACGCTTGATAAGGGCAAGTCGCAGGTGCATTGGTTTTGGG
AGGCCTTCCCTGCTAGCTCGGGGAAGGAGGACCGGACGACGTATTTGTTT
ATGTATTGTGATGCCAAGCCGGAGCGTCCGTCGATACTGGAGTGTTTTGA
GGTACATATGTAA
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Synonyms
Publications