jgi.p|Nanoce1779_2|587914, mRNA_4792 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587914
Unique NamemRNA_4792
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length778
Alignment locationscaffold_9:636736..637513 +

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Properties
Property NameValue
TranscriptId588000
TrackFilteredModels2
ProteinId587914
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:636736..637513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587914gene_4792Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587914mRNA_4792-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4792CDS_4792Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4792 ID=mRNA_4792|Name=jgi.p|Nanoce1779_2|587914|organism=Nannochloropsis oceanica|type=mRNA|length=778bp
ACAGGCAGCAACGGACGCGCAGCGTCATCATGCTGCCAGTCGTGCGACGC
ACCGCCCGGGCCTTGCCCTTGCTAATGCCCCCCCGCCTTTCCCCCACGAC
CACGCCCACGTCGACCAGCACCATTATAGCCGTTCGACACTCCACCATCT
GGCGAAAGGTGCAAGGTGCGATTCAAGAGCGGCAAGGCACCAAGGAAGAG
GAGCAGTTCCAGTCGGAGCTCACCCGCTTGGCAAGTATGACCAAGTACGA
CTTACGGGCTTTCAAAGAAGCCATGGACAACGCGGAGAAGGGCTCATGGT
TTTCGTGGGTGAACAAGGTGCCTGGCGTGAGGAGCATGCCGGAGGTAATG
ATGGGGGAAAGGTACAAGAAGATTTTGGGGGCGCTGACGGAGGAAGAACT
GTCCAACCCAGAGCTGATTAAGTCGCGGGAGAAGCAACGCGTGGCCACGC
AGAGTGGAGAGTCGGTGCAGGAGATCAATTTGTTACTGAATTTATACGAG
AACTCACAGTCGCTGCACAAATGGGTGCGGCGGCGCGTGGCGGACAAGAA
GGAACTGCCCAAGACGAGAAGTGAATGTCAGGTATTGATGATGGGGGACC
CGGCAGGTATTTCCGTGAGTGCGATGCAGCAGAAACAGCAACGACGAGCC
TCGCGACGAGGGAGCCGGTTGCCGTTTTAGAGTGAGGATCGAAAAGAGAG
GTACGAGAAGAAAGAAAACAAGACGCACATTAGGAGAGGCGCTTTGGTAG
CCTGAGTGGCAAGCGGGCGGGCGCCAAC
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protein sequence of jgi.p|Nanoce1779_2|587914

>mRNA_4792-protein ID=mRNA_4792-protein|Name=jgi.p|Nanoce1779_2|587914|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MLPVVRRTARALPLLMPPRLSPTTTPTSTSTIIAVRHSTIWRKVQGAIQE
RQGTKEEEQFQSELTRLASMTKYDLRAFKEAMDNAEKGSWFSWVNKVPGV
RSMPEVMMGERYKKILGALTEEELSNPELIKSREKQRVATQSGESVQEIN
LLLNLYENSQSLHKWVRRRVADKKELPKTRSECQVLMMGDPAGISVSAMQ
QKQQRRASRRGSRLPF*
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mRNA from alignment at scaffold_9:636736..637513+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4792 ID=mRNA_4792|Name=jgi.p|Nanoce1779_2|587914|organism=Nannochloropsis oceanica|type=mRNA|length=778bp|location=Sequence derived from alignment at scaffold_9:636736..637513+ (Nannochloropsis oceanica)
ACAGGCAGCAACGGACGCGCAGCGTCATCATGCTGCCAGTCGTGCGACGC
ACCGCCCGGGCCTTGCCCTTGCTAATGCCCCCCCGCCTTTCCCCCACGAC
CACGCCCACGTCGACCAGCACCATTATAGCCGTTCGACACTCCACCATCT
GGCGAAAGGTGCAAGGTGCGATTCAAGAGCGGCAAGGCACCAAGGAAGAG
GAGCAGTTCCAGTCGGAGCTCACCCGCTTGGCAAGTATGACCAAGTACGA
CTTACGGGCTTTCAAAGAAGCCATGGACAACGCGGAGAAGGGCTCATGGT
TTTCGTGGGTGAACAAGGTGCCTGGCGTGAGGAGCATGCCGGAGGTAATG
ATGGGGGAAAGGTACAAGAAGATTTTGGGGGCGCTGACGGAGGAAGAACT
GTCCAACCCAGAGCTGATTAAGTCGCGGGAGAAGCAACGCGTGGCCACGC
AGAGTGGAGAGTCGGTGCAGGAGATCAATTTGTTACTGAATTTATACGAG
AACTCACAGTCGCTGCACAAATGGGTGCGGCGGCGCGTGGCGGACAAGAA
GGAACTGCCCAAGACGAGAAGTGAATGTCAGGTATTGATGATGGGGGACC
CGGCAGGTATTTCCGTGAGTGCGATGCAGCAGAAACAGCAACGACGAGCC
TCGCGACGAGGGAGCCGGTTGCCGTTTTAGAGTGAGGATCGAAAAGAGAG
GTACGAGAAGAAAGAAAACAAGACGCACATTAGGAGAGGCGCTTTGGTAG
CCTGAGTGGCAAGCGGGCGGGCGCCAAC
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Coding sequence (CDS) from alignment at scaffold_9:636736..637513+

>mRNA_4792 ID=mRNA_4792|Name=jgi.p|Nanoce1779_2|587914|organism=Nannochloropsis oceanica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_9:636736..637513+ (Nannochloropsis oceanica)
ATGCTGCCAGTCGTGCGACGCACCGCCCGGGCCTTGCCCTTGCTAATGCC
CCCCCGCCTTTCCCCCACGACCACGCCCACGTCGACCAGCACCATTATAG
CCGTTCGACACTCCACCATCTGGCGAAAGGTGCAAGGTGCGATTCAAGAG
CGGCAAGGCACCAAGGAAGAGGAGCAGTTCCAGTCGGAGCTCACCCGCTT
GGCAAGTATGACCAAGTACGACTTACGGGCTTTCAAAGAAGCCATGGACA
ACGCGGAGAAGGGCTCATGGTTTTCGTGGGTGAACAAGGTGCCTGGCGTG
AGGAGCATGCCGGAGGTAATGATGGGGGAAAGGTACAAGAAGATTTTGGG
GGCGCTGACGGAGGAAGAACTGTCCAACCCAGAGCTGATTAAGTCGCGGG
AGAAGCAACGCGTGGCCACGCAGAGTGGAGAGTCGGTGCAGGAGATCAAT
TTGTTACTGAATTTATACGAGAACTCACAGTCGCTGCACAAATGGGTGCG
GCGGCGCGTGGCGGACAAGAAGGAACTGCCCAAGACGAGAAGTGAATGTC
AGGTATTGATGATGGGGGACCCGGCAGGTATTTCCGTGAGTGCGATGCAG
CAGAAACAGCAACGACGAGCCTCGCGACGAGGGAGCCGGTTGCCGTTTTA
G
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Synonyms
Publications