jgi.p|Nanoce1779_2|587908, mRNA_4790 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587908
Unique Name	mRNA_4790
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2182
Alignment location	scaffold_9:631568..633749 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587994
Track	FilteredModels2
ProteinId	587908

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:631568..633749 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587908	gene_4790	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587908	mRNA_4790-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4790	CDS_4790	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:631568..633749+
coding sequence from alignment at scaffold_9:631568..633749+

mRNA sequence

>mRNA_4790 ID=mRNA_4790|Name=jgi.p|Nanoce1779_2|587908|organism=Nannochloropsis oceanica|type=mRNA|length=2182bp
ACAGGGATTCCACGATTGGCAAAACGTGCCGACCAAATGCACGGGGAGGG
TTATCATCCTTGATGCCTAACATTGGCGCAGACAACCTCCTCTCGGCCGT
GCTCCTGACTGCGTGTGCATGCTTCTACTCCTTTGCGTGGTCCCCCGTGC
CCCATCCCATGCACCGGGCTTCCTTCCCTACAAGCATTACATCACGCAAT
AACAGAGCAAGACAGCCTTTCCGTAGCAACCCCTGGGTCGCCATGAGCTC
GGCAGGCTTGGAGGCACCTAAGAGGGTCGCAGTCCTTGGCGCTGGCGCCG
CGGGCCTCGTCGCAGGACGGCTGTTGCATGATGCAGGCTTCGACGTGCAT
ATCCTGGAAAAGACGTCCACCGTGGGCGGGGTGTGGAAGTACCGGCCCAA
AGACGTGGTGTACAAGTCATTGACCACCAACTTGCCAAAGGAGATCATGG
CATTTCTTGACGCGCCCTTCGATCCGACCCTTCCTTCTTTTTTGGGACAT
GCACAAGTCCAGGAGTACTTGGAGAACTACGCGGAGCAGCATGCTTTGAG
TGACCTCATTGAATTCAACACGGAAGTCAAGGCGGTGAGGCCTGTACGGC
GGAGCGGCAGCAGTAGCAGCAGCAGTAACGGTTGTGATGTTGGGGAAGGG
AAGAAGGACGGATACGTGCCGTGGCCGGCGGGAGATTACACGGTGTTGAA
AGAAAACGAAAGGGATAAAGAAGAAGAGGGAGAGGGGCCATTGTGGCAAG
TCACAACAGCAAGCAGCAATCATCGCAACCACCTCAACCAACAGCAACAG
GGAGAACGGCAAGAAATATACGACGCCGTCGTCGTCTGCAACGGCCATTA
CGACGTTCCCTACACCCCCTCCCTTCCGGGCCTCTCCGGGAATTATAAGG
GTCGCATTCTTCATTCACGCGAATACGATAATCCAGAGATGTTCAGAGGA
TTAAAGGTGTTGTGTGTGGGGTACAAATCAAGCGGCACGGACATTGCCAG
GGAAGTGGCGTCGGTGGCCAAAGAAGTGCATGTGGTGGATCGACGGCTGT
CGAAGGCGGTGAAGGAGGGAATGAAGGAGGTCGAAGAGATCGGTGTACAC
TTGGGGAACATATATCGAAGGCCGGACGTGCTCGGGTTTTTCCCGGGGGA
CGATGGCGAGGGGAAGAGCGTGGGCTTTGTGGATGGAAGTGTGTGTGACG
GGGTGGACGTCGTCCTGTTCTGTACTGGATATTGTTACAGCATGCCATTT
TTGAGTGGTGGGACTCTTGATGAAGAGATGAACCCGTCCTCGTCCTCGTC
CTCGCTCCCCACTTCGGATGCACGATTATTGCGGATTAAGGACCGCGCTG
TATTCCCCCTCTATCAACATCTCTTCCATGCTTATTTCCCTTCGCTCGTT
TTCCTGGGCCTGTTGCATTCTGTGGTGCCTTTTCCTATGTTTGAGCTGCA
AGCGAAGTGGCTCGTGCGATCCCTCCTGTCCTCTGCACAGCAAGAGCAAG
GGAGGAGCGCTGGTACATCTTCCTCCCTTCCTTCCCCCCCCTCTCCTTCC
CTTCCCTCTCGCCGCGCTCGTTTCCAATGGCTGGAGGAGGAGAAGCATCG
AAGAAAACAACCTTTAACAGATAATTTTGTATCGGCAGCTTCAGGAGCGA
CTTCAACAACATCAACAACGGCGGCGGCGGCGGCAGCAGCATCATCATCG
CCAACGGTACCACCACAGGTAGTAGTGCCTGAAGGACCAGCAGGGCCACC
ACCTGCAGCAGCAGCAGCAGCGACTGCAGCGACCACAAGACTCGGAAGGG
ACTGGTTCTACATGGGTCCCAACCAGTGGGCCTACAACCGCCTTCTCGCC
ACCCAAGCCCAATGTCTCACCCCAGAACTAGAGCAAGACCTGCAAATTAG
AAAGGGTATATACGATGATGTGTCCAAACGACGCCCGATTTTTCCGGGAG
GGCGGGATAGTTATCGCAAGTGTGAATATAGAATGGAGGAGATTAAGAAA
GGATGGACGGTGATGGAGGGAGAGGAGAAAGAGGAGCAGCCTGCGAAAAA
CGAGAGGAAAGCCCAGTATTTGTGAAAGAGATAGCGAGATGGTGATGTAT
CAAATGAATAACACACCATTAGACCTATAAAGCAACAAAAATAAGACTAG
AAAAGAACAACAAATACGGCAAAGAATCGTTA

protein sequence of jgi.p|Nanoce1779_2|587908

>mRNA_4790-protein ID=mRNA_4790-protein|Name=jgi.p|Nanoce1779_2|587908|organism=Nannochloropsis oceanica|type=polypeptide|length=671bp
MPNIGADNLLSAVLLTACACFYSFAWSPVPHPMHRASFPTSITSRNNRAR
QPFRSNPWVAMSSAGLEAPKRVAVLGAGAAGLVAGRLLHDAGFDVHILEK
TSTVGGVWKYRPKDVVYKSLTTNLPKEIMAFLDAPFDPTLPSFLGHAQVQ
EYLENYAEQHALSDLIEFNTEVKAVRPVRRSGSSSSSSNGCDVGEGKKDG
YVPWPAGDYTVLKENERDKEEEGEGPLWQVTTASSNHRNHLNQQQQGERQ
EIYDAVVVCNGHYDVPYTPSLPGLSGNYKGRILHSREYDNPEMFRGLKVL
CVGYKSSGTDIAREVASVAKEVHVVDRRLSKAVKEGMKEVEEIGVHLGNI
YRRPDVLGFFPGDDGEGKSVGFVDGSVCDGVDVVLFCTGYCYSMPFLSGG
TLDEEMNPSSSSSSLPTSDARLLRIKDRAVFPLYQHLFHAYFPSLVFLGL
LHSVVPFPMFELQAKWLVRSLLSSAQQEQGRSAGTSSSLPSPPSPSLPSR
RARFQWLEEEKHRRKQPLTDNFVSAASGATSTTSTTAAAAAAASSSPTVP
PQVVVPEGPAGPPPAAAAAATAATTRLGRDWFYMGPNQWAYNRLLATQAQ
CLTPELEQDLQIRKGIYDDVSKRRPIFPGGRDSYRKCEYRMEEIKKGWTV
MEGEEKEEQPAKNERKAQYL*

mRNA from alignment at scaffold_9:631568..633749+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4790 ID=mRNA_4790|Name=jgi.p|Nanoce1779_2|587908|organism=Nannochloropsis oceanica|type=mRNA|length=2182bp|location=Sequence derived from alignment at scaffold_9:631568..633749+ (Nannochloropsis oceanica)
ACAGGGATTCCACGATTGGCAAAACGTGCCGACCAAATGCACGGGGAGGG
TTATCATCCTTGATGCCTAACATTGGCGCAGACAACCTCCTCTCGGCCGT
GCTCCTGACTGCGTGTGCATGCTTCTACTCCTTTGCGTGGTCCCCCGTGC
CCCATCCCATGCACCGGGCTTCCTTCCCTACAAGCATTACATCACGCAAT
AACAGAGCAAGACAGCCTTTCCGTAGCAACCCCTGGGTCGCCATGAGCTC
GGCAGGCTTGGAGGCACCTAAGAGGGTCGCAGTCCTTGGCGCTGGCGCCG
CGGGCCTCGTCGCAGGACGGCTGTTGCATGATGCAGGCTTCGACGTGCAT
ATCCTGGAAAAGACGTCCACCGTGGGCGGGGTGTGGAAGTACCGGCCCAA
AGACGTGGTGTACAAGTCATTGACCACCAACTTGCCAAAGGAGATCATGG
CATTTCTTGACGCGCCCTTCGATCCGACCCTTCCTTCTTTTTTGGGACAT
GCACAAGTCCAGGAGTACTTGGAGAACTACGCGGAGCAGCATGCTTTGAG
TGACCTCATTGAATTCAACACGGAAGTCAAGGCGGTGAGGCCTGTACGGC
GGAGCGGCAGCAGTAGCAGCAGCAGTAACGGTTGTGATGTTGGGGAAGGG
AAGAAGGACGGATACGTGCCGTGGCCGGCGGGAGATTACACGGTGTTGAA
AGAAAACGAAAGGGATAAAGAAGAAGAGGGAGAGGGGCCATTGTGGCAAG
TCACAACAGCAAGCAGCAATCATCGCAACCACCTCAACCAACAGCAACAG
GGAGAACGGCAAGAAATATACGACGCCGTCGTCGTCTGCAACGGCCATTA
CGACGTTCCCTACACCCCCTCCCTTCCGGGCCTCTCCGGGAATTATAAGG
GTCGCATTCTTCATTCACGCGAATACGATAATCCAGAGATGTTCAGAGGA
TTAAAGGTGTTGTGTGTGGGGTACAAATCAAGCGGCACGGACATTGCCAG
GGAAGTGGCGTCGGTGGCCAAAGAAGTGCATGTGGTGGATCGACGGCTGT
CGAAGGCGGTGAAGGAGGGAATGAAGGAGGTCGAAGAGATCGGTGTACAC
TTGGGGAACATATATCGAAGGCCGGACGTGCTCGGGTTTTTCCCGGGGGA
CGATGGCGAGGGGAAGAGCGTGGGCTTTGTGGATGGAAGTGTGTGTGACG
GGGTGGACGTCGTCCTGTTCTGTACTGGATATTGTTACAGCATGCCATTT
TTGAGTGGTGGGACTCTTGATGAAGAGATGAACCCGTCCTCGTCCTCGTC
CTCGCTCCCCACTTCGGATGCACGATTATTGCGGATTAAGGACCGCGCTG
TATTCCCCCTCTATCAACATCTCTTCCATGCTTATTTCCCTTCGCTCGTT
TTCCTGGGCCTGTTGCATTCTGTGGTGCCTTTTCCTATGTTTGAGCTGCA
AGCGAAGTGGCTCGTGCGATCCCTCCTGTCCTCTGCACAGCAAGAGCAAG
GGAGGAGCGCTGGTACATCTTCCTCCCTTCCTTCCCCCCCCTCTCCTTCC
CTTCCCTCTCGCCGCGCTCGTTTCCAATGGCTGGAGGAGGAGAAGCATCG
AAGAAAACAACCTTTAACAGATAATTTTGTATCGGCAGCTTCAGGAGCGA
CTTCAACAACATCAACAACGGCGGCGGCGGCGGCAGCAGCATCATCATCG
CCAACGGTACCACCACAGGTAGTAGTGCCTGAAGGACCAGCAGGGCCACC
ACCTGCAGCAGCAGCAGCAGCGACTGCAGCGACCACAAGACTCGGAAGGG
ACTGGTTCTACATGGGTCCCAACCAGTGGGCCTACAACCGCCTTCTCGCC
ACCCAAGCCCAATGTCTCACCCCAGAACTAGAGCAAGACCTGCAAATTAG
AAAGGGTATATACGATGATGTGTCCAAACGACGCCCGATTTTTCCGGGAG
GGCGGGATAGTTATCGCAAGTGTGAATATAGAATGGAGGAGATTAAGAAA
GGATGGACGGTGATGGAGGGAGAGGAGAAAGAGGAGCAGCCTGCGAAAAA
CGAGAGGAAAGCCCAGTATTTGTGAAAGAGATAGCGAGATGGTGATGTAT
CAAATGAATAACACACCATTAGACCTATAAAGCAACAAAAATAAGACTAG
AAAAGAACAACAAATACGGCAAAGAATCGTTA

Coding sequence (CDS) from alignment at scaffold_9:631568..633749+

>mRNA_4790 ID=mRNA_4790|Name=jgi.p|Nanoce1779_2|587908|organism=Nannochloropsis oceanica|type=CDS|length=2013bp|location=Sequence derived from alignment at scaffold_9:631568..633749+ (Nannochloropsis oceanica)
ATGCCTAACATTGGCGCAGACAACCTCCTCTCGGCCGTGCTCCTGACTGC
GTGTGCATGCTTCTACTCCTTTGCGTGGTCCCCCGTGCCCCATCCCATGC
ACCGGGCTTCCTTCCCTACAAGCATTACATCACGCAATAACAGAGCAAGA
CAGCCTTTCCGTAGCAACCCCTGGGTCGCCATGAGCTCGGCAGGCTTGGA
GGCACCTAAGAGGGTCGCAGTCCTTGGCGCTGGCGCCGCGGGCCTCGTCG
CAGGACGGCTGTTGCATGATGCAGGCTTCGACGTGCATATCCTGGAAAAG
ACGTCCACCGTGGGCGGGGTGTGGAAGTACCGGCCCAAAGACGTGGTGTA
CAAGTCATTGACCACCAACTTGCCAAAGGAGATCATGGCATTTCTTGACG
CGCCCTTCGATCCGACCCTTCCTTCTTTTTTGGGACATGCACAAGTCCAG
GAGTACTTGGAGAACTACGCGGAGCAGCATGCTTTGAGTGACCTCATTGA
ATTCAACACGGAAGTCAAGGCGGTGAGGCCTGTACGGCGGAGCGGCAGCA
GTAGCAGCAGCAGTAACGGTTGTGATGTTGGGGAAGGGAAGAAGGACGGA
TACGTGCCGTGGCCGGCGGGAGATTACACGGTGTTGAAAGAAAACGAAAG
GGATAAAGAAGAAGAGGGAGAGGGGCCATTGTGGCAAGTCACAACAGCAA
GCAGCAATCATCGCAACCACCTCAACCAACAGCAACAGGGAGAACGGCAA
GAAATATACGACGCCGTCGTCGTCTGCAACGGCCATTACGACGTTCCCTA
CACCCCCTCCCTTCCGGGCCTCTCCGGGAATTATAAGGGTCGCATTCTTC
ATTCACGCGAATACGATAATCCAGAGATGTTCAGAGGATTAAAGGTGTTG
TGTGTGGGGTACAAATCAAGCGGCACGGACATTGCCAGGGAAGTGGCGTC
GGTGGCCAAAGAAGTGCATGTGGTGGATCGACGGCTGTCGAAGGCGGTGA
AGGAGGGAATGAAGGAGGTCGAAGAGATCGGTGTACACTTGGGGAACATA
TATCGAAGGCCGGACGTGCTCGGGTTTTTCCCGGGGGACGATGGCGAGGG
GAAGAGCGTGGGCTTTGTGGATGGAAGTGTGTGTGACGGGGTGGACGTCG
TCCTGTTCTGTACTGGATATTGTTACAGCATGCCATTTTTGAGTGGTGGG
ACTCTTGATGAAGAGATGAACCCGTCCTCGTCCTCGTCCTCGCTCCCCAC
TTCGGATGCACGATTATTGCGGATTAAGGACCGCGCTGTATTCCCCCTCT
ATCAACATCTCTTCCATGCTTATTTCCCTTCGCTCGTTTTCCTGGGCCTG
TTGCATTCTGTGGTGCCTTTTCCTATGTTTGAGCTGCAAGCGAAGTGGCT
CGTGCGATCCCTCCTGTCCTCTGCACAGCAAGAGCAAGGGAGGAGCGCTG
GTACATCTTCCTCCCTTCCTTCCCCCCCCTCTCCTTCCCTTCCCTCTCGC
CGCGCTCGTTTCCAATGGCTGGAGGAGGAGAAGCATCGAAGAAAACAACC
TTTAACAGATAATTTTGTATCGGCAGCTTCAGGAGCGACTTCAACAACAT
CAACAACGGCGGCGGCGGCGGCAGCAGCATCATCATCGCCAACGGTACCA
CCACAGGTAGTAGTGCCTGAAGGACCAGCAGGGCCACCACCTGCAGCAGC
AGCAGCAGCGACTGCAGCGACCACAAGACTCGGAAGGGACTGGTTCTACA
TGGGTCCCAACCAGTGGGCCTACAACCGCCTTCTCGCCACCCAAGCCCAA
TGTCTCACCCCAGAACTAGAGCAAGACCTGCAAATTAGAAAGGGTATATA
CGATGATGTGTCCAAACGACGCCCGATTTTTCCGGGAGGGCGGGATAGTT
ATCGCAAGTGTGAATATAGAATGGAGGAGATTAAGAAAGGATGGACGGTG
ATGGAGGGAGAGGAGAAAGAGGAGCAGCCTGCGAAAAACGAGAGGAAAGC
CCAGTATTTGTGA

Synonyms

Publications