jgi.p|Nanoce1779_2|537631, mRNA_479 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|537631
Unique Name	mRNA_479
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2461
Alignment location	scaffold_3:1164826..1167492 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	537717
Track	FilteredModels2
ProteinId	537631

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1164826..1167492 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|537631	gene_479	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|537631	mRNA_479-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_479	CDS_479	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1164826..1167492+
coding sequence from alignment at scaffold_3:1164826..1167492+

mRNA sequence

>mRNA_479 ID=mRNA_479|Name=jgi.p|Nanoce1779_2|537631|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp
CCAGCGAGGGCGTGTGCGGCTGTGGGTATGTGACGTGAAGGCCTCGACGA
TGTTTGCTCCTGCGTCAGTTATGGGGGAAAATCGTGAGAGTGACAGAAGA
TGATGAGACCGAGCAAATCGAGTAGAAGAAAGGAGCGAGGCATGTGTGTC
GCGCTTGAGTATTTATTAGGTGGACTTGCAAACGTGTGGAAGCAAGGCAT
AATGCAAATCGAGCGAAAGCGTCGCCGATGCTTCCCTTCACACATCCCTG
CTTGGCACACGCGCCTTCATATGCATCACCTCGTCTTCCCACGCATCACA
GGCAGCGCACGGCGCTTGGCGTCATGTGCGTCTAGTAGTAGAGCCAGGAC
CAGGCAAGCCACAGACCTGAAGAGCTACAATCATCCTCCCTTCTTTCCAG
TTCGCGTCAAGCATTTTTCAGCTTCAACTCATGTCACCACCGCTAACGTC
AAGACGGGCGCCTGCACGCCCTCAATCAAACGCATTTGTCGTCCTTACCC
TCCTAATCCTTCTCGTTCACTTGTCCCTCGTCGCTGATGGCTGGCGGTTT
GGTCTAAATCGGCTTCAGCCCCCTTCTCCATCATCATCCCCGAGACGGCC
CCGCGGAGATCTCCTCGCGGCTGCAGCCGCCTCCGCCTCAAGCAGCAGCG
GCGGTGGTGGCGGGACGGCCACGGTTTCTAAAGGAGAAGGAGGAGCAGCA
GATTCAGGAGGAGTTGTGTCGGTCCAGCAGGTGTTCGTCTGCACGAATCG
ATGGTGTATGCAACGAGGGGCCGGGGCGACGATGGGGAGCTTTATCGGCT
TAACGCCATATGGGAGTCAGATGCGGGTGCAGGGTGTTGATTGTTTAGGG
AGATGTAACAAGGGCCCAAATATAAGACTCTTGAAATCGAATGGCACCTT
TGAAGAGCTGAGCTACATTGATTCGGTGGAAAAGGTCTATGACGTGTTCA
CCTCCCAACTCGGTATCAGCATCAACCAATCCTCCGCCGACTGCCTGAAG
CTCAACTTCCAAGGCAATGCCCACTTGGACAAAAACGAGGTCGATCAGGC
TATTGGATGCTACGACAAGGCCATCCCCCTCTCTCACAAAGGGCAGGAAG
GCGTGTTACGTGTCATGCGTTCGACCGCTTACCTCCAAAGGGCTTACACC
CACTTTATGCAATTTAGGGAGCTCGTCGACCAGATAGCACAGCCCCTGCC
CGACCAGGCAGTCTTTGGCTTGTTGGAGCGCGTACATGCCTCCTCCCCCT
TCCTTGTTGTCCCTATTTTATCGCGCCTTACTCAGGTGTATGAGGCCCGG
GGGCGGTTATACCGCTTGACCACGTTCCAGTTTTCGCTGTTTGAATTCGC
GGTGCATAAGGCGTGCCATGATGCACTGACTGCGACGCATATATTGCCGA
ATTTCACCAAGAGTTGGATCAGAGCAGGTAGGCTTTGGATGGTGGGTTGC
GGATGTGAGTGGGGGAGGGATATCTCGATAGGTATCTTGTCGCTTGCTCC
AATGAGGCGTACTTCGATCCCTTATTCCACTCACCGTCTCATTCACTCGT
TCTTCCATCGCTCCTACCTCTTTCCTTCCCTTCTTTCCCTCTTTGCCCTC
CCTCAGGCCATGGCTTGCGGTTCCTTCGTCGATTCAAGGACGCGATCGCC
TGCTACCAGGTCGTTGTCAAGATCGATCCTTCCACCGCTAAGGAGCTAGA
ACAAGAAATAGAGCTTCTCGAAAAGGTACAGAGGTATGTGGCGAATGCAC
GTGAGCAGGGAGTTTCGGAGGAGAGCCTTGTGATAACGCTGGATGCGTTG
GGTGTGTTTGCGTGTTCATGAATTAAAAAATAAACGGGACTGGGAACGTT
TCCTGGGCTAGGCACATGGGCCTCAACTTGAGAGGACAGAAATAGCATGA
GAGGGAAGGAAGATCATAGGATGGTTGTAAATATCTTGGGCAAAAGAAAG
TTAATTGTGGCATTTGCTGGCCATCGTTGGGGCTGCCCGGAAAGGGTTAG
GGTCTTCGCTATCCTGGCGAGCGCACACACCGATAGAAAGAAGAGATGGA
GGGGACGTGTAGGAATAGCAGCATCGAGGTAGGCAGAAGAAAACAAGCAA
GGGAGGAAGGAAAGACGATGAGTAGGGGGGAAGGGATGAGTATAACAGGA
AATAAAAATAAACAAGAGTCGATTAGGGTTAAACTGACACCACCTAATTG
ATGAGCATATTTTTTCTCTTTCCTTTCTATGCACGCCGACTGAGTGGTGG
TACAACAAGTGAAAGACCAAAGACCCTCCCTTGTCTTTAAAGACCTGTCT
CTCCTTTCTAATTTTTACTAGGAAATAAAAATAAACAAGAGTCGATTAGG
GTTAAACTGACACCACCTAATTGATGAGCATATTTTTTCTCTTTCCTTTC
TATGCACGCCGACTGAGTGGTGGTACAACAAGTGAAAGACCAAAGACCCT
CCCTTGTCTTT

protein sequence of jgi.p|Nanoce1779_2|537631

>mRNA_479-protein ID=mRNA_479-protein|Name=jgi.p|Nanoce1779_2|537631|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MSPPLTSRRAPARPQSNAFVVLTLLILLVHLSLVADGWRFGLNRLQPPSP
SSSPRRPRGDLLAAAAASASSSSGGGGGTATVSKGEGGAADSGGVVSVQQ
VFVCTNRWCMQRGAGATMGSFIGLTPYGSQMRVQGVDCLGRCNKGPNIRL
LKSNGTFEELSYIDSVEKVYDVFTSQLGISINQSSADCLKLNFQGNAHLD
KNEVDQAIGCYDKAIPLSHKGQEGVLRVMRSTAYLQRAYTHFMQFRELVD
QIAQPLPDQAVFGLLERVHASSPFLVVPILSRLTQVYEARGRLYRLTTFQ
FSLFEFAVHKACHDALTATHILPNFTKSWIRAGRLWMVGCGCEWGRDISI
GILSLAPMRRTSIPYSTHRLIHSFFHRSYLFPSLLSLFALPQAMACGSFV
DSRTRSPATRSLSRSILPPLRS*

mRNA from alignment at scaffold_3:1164826..1167492+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_479 ID=mRNA_479|Name=jgi.p|Nanoce1779_2|537631|organism=Nannochloropsis oceanica|type=mRNA|length=2667bp|location=Sequence derived from alignment at scaffold_3:1164826..1167492+ (Nannochloropsis oceanica)
CCAGCGAGGGCGTGTGCGGCTGTGGGTATGTGACGTGAAGGCCTCGACGA
TGTTTGCTCCTGCGTCAGTTATGGGGGAAAATCGTGAGAGTGACAGAAGA
TGATGAGACCGAGCAAATCGAGTAGAAGAAAGGAGCGAGGCATGTGTGTC
GCGCTTGAGTATTTATTAGGTGGACTTGCAAACGTGTGGAAGCAAGGCAT
AATGCAAATCGAGCGAAAGCGTCGCCGATGCTTCCCTTCACACATCCCTG
CTTGGCACACGCGCCTTCATATGCATCACCTCGTCTTCCCACGCATCACA
GGCAGCGCACGGCGCTTGGCGTCATGTGCGTCTAGTAGTAGAGCCAGGAC
CAGGCAAGCCACAGACCTGAAGAGCTACAATCATCCTCCCTTCTTTCCAG
TTCGCGTCAAGCATTTTTCAGCTTCAACTCATGTCACCACCGCTAACGTC
AAGACGGGCGCCTGCACGCCCTCAATCAAACGCATTTGTCGTCCTTACCC
TCCTAATCCTTCTCGTTCACTTGTCCCTCGTCGCTGATGGCTGGCGGTTT
GGTCTAAATCGGCTTCAGCCCCCTTCTCCATCATCATCCCCGAGACGGCC
CCGCGGAGATCTCCTCGCGGCTGCAGCCGCCTCCGCCTCAAGCAGCAGCG
GCGGTGGTGGCGGGACGGCCACGGTTTCTAAAGGAGAAGGAGGAGCAGCA
GATTCAGGAGGAGTTGTGTCGGTCCAGCAGGTGTTCGTCTGCACGAATCG
ATGGTGTATGCAACGAGGGGCCGGGGCGACGATGGGGAGCTTTATCGGCT
TAACGCCATATGGGAGTCAGATGCGGGTGCAGGGTGTTGATTGTTTAGGG
AGATGTAACAAGGGCCCAAATATAAGACTCTTGAAATCGAATGGCACCTT
TGAAGAGCTGAGCTACATTGATTCGGTGGAAAAGGTGAGGGAAGGAGGGA
GGGAGGGACGGAGGGGGGGAGAGACGGAACAGGGTAGAGCATGTTGTCGG
TTATGGATGAAATGAAGGAGGAGCGCTGATGAATAGAGATACATTCTCGT
CTACTACTGACGGCCATCGCCCATTTTCTCAAACTATTCCTCCTCCCGTC
CCACAATGCCCACCCCCCCCTCCCTATCACTCTCACACAGGTCTATGACG
TGTTCACCTCCCAACTCGGTATCAGCATCAACCAATCCTCCGCCGACTGC
CTGAAGCTCAACTTCCAAGGCAATGCCCACTTGGACAAAAACGAGGTCGA
TCAGGCTATTGGATGCTACGACAAGGCCATCCCCCTCTCTCACAAAGGGC
AGGAAGGCGTGTTACGTGTCATGCGTTCGACCGCTTACCTCCAAAGGGCT
TACACCCACTTTATGCAATTTAGGGAGCTCGTCGACCAGATAGCACAGCC
CCTGCCCGACCAGGCAGTCTTTGGCTTGTTGGAGCGCGTACATGCCTCCT
CCCCCTTCCTTGTTGTCCCTATTTTATCGCGCCTTACTCAGGTGTATGAG
GCCCGGGGGCGGTTATACCGCTTGACCACGTTCCAGTTTTCGCTGTTTGA
ATTCGCGGTGCATAAGGCGTGCCATGATGCACTGACTGCGACGCATATAT
TGCCGAATTTCACCAAGAGTTGGATCAGAGCAGGTAGGCTTTGGATGGTG
GGTTGCGGATGTGAGTGGGGGAGGGATATCTCGATAGGTATCTTGTCGCT
TGCTCCAATGAGGCGTACTTCGATCCCTTATTCCACTCACCGTCTCATTC
ACTCGTTCTTCCATCGCTCCTACCTCTTTCCTTCCCTTCTTTCCCTCTTT
GCCCTCCCTCAGGCCATGGCTTGCGGTTCCTTCGTCGATTCAAGGACGCG
ATCGCCTGCTACCAGGTCGTTGTCAAGATCGATCCTTCCACCGCTAAGGA
GCTAGAACAAGAAATAGAGCTTCTCGAAAAGGTACAGAGGTATGTGGCGA
ATGCACGTGAGCAGGGAGTTTCGGAGGAGAGCCTTGTGATAACGCTGGAT
GCGTTGGGTGTGTTTGCGTGTTCATGAATTAAAAAATAAACGGGACTGGG
AACGTTTCCTGGGCTAGGCACATGGGCCTCAACTTGAGAGGACAGAAATA
GCATGAGAGGGAAGGAAGATCATAGGATGGTTGTAAATATCTTGGGCAAA
AGAAAGTTAATTGTGGCATTTGCTGGCCATCGTTGGGGCTGCCCGGAAAG
GGTTAGGGTCTTCGCTATCCTGGCGAGCGCACACACCGATAGAAAGAAGA
GATGGAGGGGACGTGTAGGAATAGCAGCATCGAGGTAGGCAGAAGAAAAC
AAGCAAGGGAGGAAGGAAAGACGATGAGTAGGGGGGAAGGGATGAGTATA
ACAGGAAATAAAAATAAACAAGAGTCGATTAGGGTTAAACTGACACCACC
TAATTGATGAGCATATTTTTTCTCTTTCCTTTCTATGCACGCCGACTGAG
TGGTGGTACAACAAGTGAAAGACCAAAGACCCTCCCTTGTCTTTAAAGAC
CTGTCTCTCCTTTCTAATTTTTACTAGGAAATAAAAATAAACAAGAGTCG
ATTAGGGTTAAACTGACACCACCTAATTGATGAGCATATTTTTTCTCTTT
CCTTTCTATGCACGCCGACTGAGTGGTGGTACAACAAGTGAAAGACCAAA
GACCCTCCCTTGTCTTT

Coding sequence (CDS) from alignment at scaffold_3:1164826..1167492+

>mRNA_479 ID=mRNA_479|Name=jgi.p|Nanoce1779_2|537631|organism=Nannochloropsis oceanica|type=CDS|length=2538bp|location=Sequence derived from alignment at scaffold_3:1164826..1167492+ (Nannochloropsis oceanica)
ATGTCACCACCGCTAACGTCAAGACGGGCGCCTGCACGCCCTCAATCAAA
CGCATTTGTCGTCCTTACCCTCCTAATCCTTCTCGTTCACTTGTCCCTCG
TCGCTGATGGCTGGCGGTTTGGTCTAAATCGGCTTCAGCCCCCTTCTCCA
TCATCATCCCCGAGACGGCCCCGCGGAGATCTCCTCGCGGCTGCAGCCGC
CTCCGCCTCAAGCAGCAGCGGCGGTGGTGGCGGGACGGCCACGGTTTCTA
AAGGAGAAGGAGGAGCAGCAGATTCAGGAGGAGTTGTGTCGGTCCAGCAG
GTGTTCGTCTGCACGAATCGATGGTGTATGCAACGAGGGGCCGGGGCGAC
GATGGGGAGCTTTATCGGCTTAACGCCATATGGGAGTCAGATGCGGGTGC
AGGGTGTTGATTGTTTAGGGAGATGTAACAAGGGCCCAAATATAAGACTC
TTGAAATCGAATGGCACCTTTGAAGAGCTGAGCTACATTGATTCGGTGGA
AAAGGTCTATGACGTGTTCACCTCCCAACTCGGTATCAGCATCAACCAAT
CCTCCGCCGACTGCCTGAAGCTCAACTTCCAAGGCAATGCCCACTTGGAC
AAAAACGAGGTCGATCAGGCTATTGGATGCTACGACAAGGCCATCCCCCT
CTCTCACAAAGGGCAGGAAGGCGTGTTACGTGTCATGCGTTCGACCGCTT
ACCTCCAAAGGGCTTACACCCACTTTATGCAATTTAGGGAGCTCGTCGAC
CAGATAGCACAGCCCCTGCCCGACCAGGCAGTCTTTGGCTTGTTGGAGCG
CGTACATGCCTCCTCCCCCTTCCTTGTTGTCCCTATTTTATCGCGCCTTA
CTCAGGTGTATGAGGCCCGGGGGCGGTTATACCGCTTGACCACGTTCCAG
TTTTCGCTGTTTGAATTCGCGGTGCATAAGGCGTGCCATGATGCACTGAC
TGCGACGCATATATTGCCGAATTTCACCAAGAGTTGGATCAGAGCAGGTA
GGCTTTGGATGGTGGGTTGCGGATGTGAGTGGGGGAGGGATATCTCGATA
GGTATCTTGTCGCTTGCTCCAATGAGGCGTACTTCGATCCCTTATTCCAC
TCACCGTCTCATTCACTCGTTCTTCCATCGCTCCTACCTCTTTCCTTCCC
TTCTTTCCCTCTTTGCCCTCCCTCAGGCCATGGCTTGCGGTTCCTTCGTC
GATTCAAGGACGCGATCGCCTGCTACCAGGTCGTTGTCAAGATCGATCCT
TCCACCGCTAAGGAGCTAGATGTCACCACCGCTAACGTCAAGACGGGCGC
CTGCACGCCCTCAATCAAACGCATTTGTCGTCCTTACCCTCCTAATCCTT
CTCGTTCACTTGTCCCTCGTCGCTGATGGCTGGCGGTTTGGTCTAAATCG
GCTTCAGCCCCCTTCTCCATCATCATCCCCGAGACGGCCCCGCGGAGATC
TCCTCGCGGCTGCAGCCGCCTCCGCCTCAAGCAGCAGCGGCGGTGGTGGC
GGGACGGCCACGGTTTCTAAAGGAGAAGGAGGAGCAGCAGATTCAGGAGG
AGTTGTGTCGGTCCAGCAGGTGTTCGTCTGCACGAATCGATGGTGTATGC
AACGAGGGGCCGGGGCGACGATGGGGAGCTTTATCGGCTTAACGCCATAT
GGGAGTCAGATGCGGGTGCAGGGTGTTGATTGTTTAGGGAGATGTAACAA
GGGCCCAAATATAAGACTCTTGAAATCGAATGGCACCTTTGAAGAGCTGA
GCTACATTGATTCGGTGGAAAAGGTCTATGACGTGTTCACCTCCCAACTC
GGTATCAGCATCAACCAATCCTCCGCCGACTGCCTGAAGCTCAACTTCCA
AGGCAATGCCCACTTGGACAAAAACGAGGTCGATCAGGCTATTGGATGCT
ACGACAAGGCCATCCCCCTCTCTCACAAAGGGCAGGAAGGCGTGTTACGT
GTCATGCGTTCGACCGCTTACCTCCAAAGGGCTTACACCCACTTTATGCA
ATTTAGGGAGCTCGTCGACCAGATAGCACAGCCCCTGCCCGACCAGGCAG
TCTTTGGCTTGTTGGAGCGCGTACATGCCTCCTCCCCCTTCCTTGTTGTC
CCTATTTTATCGCGCCTTACTCAGGTGTATGAGGCCCGGGGGCGGTTATA
CCGCTTGACCACGTTCCAGTTTTCGCTGTTTGAATTCGCGGTGCATAAGG
CGTGCCATGATGCACTGACTGCGACGCATATATTGCCGAATTTCACCAAG
AGTTGGATCAGAGCAGGTAGGCTTTGGATGGTGGGTTGCGGATGTGAGTG
GGGGAGGGATATCTCGATAGGTATCTTGTCGCTTGCTCCAATGAGGCGTA
CTTCGATCCCTTATTCCACTCACCGTCTCATTCACTCGTTCTTCCATCGC
TCCTACCTCTTTCCTTCCCTTCTTTCCCTCTTTGCCCTCCCTCAGGCCAT
GGCTTGCGGTTCCTTCGTCGATTCAAGGACGCGATCGCCTGCTACCAGGT
CGTTGTCAAGATCGATCCTTCCACCGCTAAGGAGCTAG

Synonyms

Publications