jgi.p|Nanoce1779_2|587906, mRNA_4789 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587906
Unique NamemRNA_4789
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length636
Alignment locationscaffold_9:630804..631439 -

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Properties
Property NameValue
TranscriptId587992
TrackFilteredModels2
ProteinId587906
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:630804..631439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587906gene_4789Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587906mRNA_4789-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4789CDS_4789Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4789 ID=mRNA_4789|Name=jgi.p|Nanoce1779_2|587906|organism=Nannochloropsis oceanica|type=mRNA|length=636bp
GAATGCCACACACTAATCCTTTACTTTATAGCGACCAACATTCATCACGC
ATACAGTGCTCATTGGCCTTGATGTTCTGCGCGCGGTAACGCAGGCATGG
CCTGGTGTGGGTAAGGGATTGCTTGATGCCGATGCCGTCTGCTTGCGTGG
CTAACCTGGCTCTCGCCTTCTTCTTCTTCTTGCCTCTGGGGGCTCATCCA
ATTCCGTGTGTGCCGAGGCCCACGCATAAATATCCACGCACAATGTTTTG
GACTTCATTTCGCTTGGAGCCGGCAGGCGCGGCGATGCATTTTGGGTTTC
CCCTTTGCTTGTCCGCCTCTGCATCACCATCATGCCCTATTTGCGGCTCA
AGTATCCTCATTCGCCGTCGCCCCCCGACCAGCCACTGGAGCCACAATGA
CCCTATAATCTTAGTGTATTTGCCTAGCACGATGATAATTGCTGCACCCG
TTGATGTTTGGCGGTCAATGGTCGCGGTCGTAGCTGACTCTGGTTATCTT
CCTCTCTCTTCGTCACCATACTTATCATCTCATACCACACATACACACTC
GACAGGCAGCCATCCACACTCGTACGCATCCCTGTCCGTCGTGGAAGGAC
CGTAGCACCGTAATCGAATTTCTTGAGGTCGTCTAG
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protein sequence of jgi.p|Nanoce1779_2|587906

>mRNA_4789-protein ID=mRNA_4789-protein|Name=jgi.p|Nanoce1779_2|587906|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MPMPSACVANLALAFFFFLPLGAHPIPCVPRPTHKYPRTMFWTSFRLEPA
GAAMHFGFPLCLSASASPSCPICGSSILIRRRPPTSHWSHNDPIILVYLP
STMIIAAPVDVWRSMVAVVADSGYLPLSSSPYLSSHTTHTHSTGSHPHSY
ASLSVVEGP*
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mRNA from alignment at scaffold_9:630804..631439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4789 ID=mRNA_4789|Name=jgi.p|Nanoce1779_2|587906|organism=Nannochloropsis oceanica|type=mRNA|length=636bp|location=Sequence derived from alignment at scaffold_9:630804..631439- (Nannochloropsis oceanica)
GAATGCCACACACTAATCCTTTACTTTATAGCGACCAACATTCATCACGC
ATACAGTGCTCATTGGCCTTGATGTTCTGCGCGCGGTAACGCAGGCATGG
CCTGGTGTGGGTAAGGGATTGCTTGATGCCGATGCCGTCTGCTTGCGTGG
CTAACCTGGCTCTCGCCTTCTTCTTCTTCTTGCCTCTGGGGGCTCATCCA
ATTCCGTGTGTGCCGAGGCCCACGCATAAATATCCACGCACAATGTTTTG
GACTTCATTTCGCTTGGAGCCGGCAGGCGCGGCGATGCATTTTGGGTTTC
CCCTTTGCTTGTCCGCCTCTGCATCACCATCATGCCCTATTTGCGGCTCA
AGTATCCTCATTCGCCGTCGCCCCCCGACCAGCCACTGGAGCCACAATGA
CCCTATAATCTTAGTGTATTTGCCTAGCACGATGATAATTGCTGCACCCG
TTGATGTTTGGCGGTCAATGGTCGCGGTCGTAGCTGACTCTGGTTATCTT
CCTCTCTCTTCGTCACCATACTTATCATCTCATACCACACATACACACTC
GACAGGCAGCCATCCACACTCGTACGCATCCCTGTCCGTCGTGGAAGGAC
CGTAGCACCGTAATCGAATTTCTTGAGGTCGTCTAG
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Coding sequence (CDS) from alignment at scaffold_9:630804..631439-

>mRNA_4789 ID=mRNA_4789|Name=jgi.p|Nanoce1779_2|587906|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_9:630804..631439- (Nannochloropsis oceanica)
ATGCCGATGCCGTCTGCTTGCGTGGCTAACCTGGCTCTCGCCTTCTTCTT
CTTCTTGCCTCTGGGGGCTCATCCAATTCCGTGTGTGCCGAGGCCCACGC
ATAAATATCCACGCACAATGTTTTGGACTTCATTTCGCTTGGAGCCGGCA
GGCGCGGCGATGCATTTTGGGTTTCCCCTTTGCTTGTCCGCCTCTGCATC
ACCATCATGCCCTATTTGCGGCTCAAGTATCCTCATTCGCCGTCGCCCCC
CGACCAGCCACTGGAGCCACAATGACCCTATAATCTTAGTGTATTTGCCT
AGCACGATGATAATTGCTGCACCCGTTGATGTTTGGCGGTCAATGGTCGC
GGTCGTAGCTGACTCTGGTTATCTTCCTCTCTCTTCGTCACCATACTTAT
CATCTCATACCACACATACACACTCGACAGGCAGCCATCCACACTCGTAC
GCATCCCTGTCCGTCGTGGAAGGACCGTAG
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Synonyms
Publications