jgi.p|Nanoce1779_2|587902, mRNA_4787 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587902
Unique NamemRNA_4787
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length581
Alignment locationscaffold_9:623106..623686 -

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Properties
Property NameValue
TranscriptId587988
TrackFilteredModels2
ProteinId587902
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:623106..623686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587902gene_4787Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587902mRNA_4787-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4787CDS_4787Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4787 ID=mRNA_4787|Name=jgi.p|Nanoce1779_2|587902|organism=Nannochloropsis oceanica|type=mRNA|length=581bp
GCACTCTCCTGACATGCAGCAGCTTGTCAGGTCCGTTATTGTGATGTGTT
TGATGATGTGTTTTCCTTATCATTTAGAGTTTCTTCCTCTTCTCATCCTT
CTGTTTTTCCTTCTTATTCTTCTCCTTCTGGTTCTCCTTTTTATTCCTCT
TCTTCGCCCTCTTCTCTTTCTTCCTGTGTCAGCACTGTTATTTTTTGGGG
AGTTTCTTCTTATTCTGATTCGGCTTCTTTCCCCTCCTTCTTTTTTGTTG
TGGTTATGGTTAGACGTCGATGTTGTGGGAGGGCCTGCATTCCTCTTCTG
TTGCATATTCGTCTTTTTTTGGTTTGTGCCACGACATATATATATACACT
AGGATTTAAAGATCAAACAACAAAAAAGACAAACAAACAAGCACCTACAC
ACCCACACGCCCACACATACCCACACCTTCCTCTTTCTTTTCCCTCATAC
GGGCACCTTTTCCCTCTTCATCTCTCGTCTTTCTATAGTCCCACATATCT
CCAAAAATTCAAACCAAAGCGTCTCACATCCAGGCATTAATCGCAATCCT
GCTCAGCGAGCAGTCAATAGCACATATGCTC
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protein sequence of jgi.p|Nanoce1779_2|587902

>mRNA_4787-protein ID=mRNA_4787-protein|Name=jgi.p|Nanoce1779_2|587902|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MQQLVRSVIVMCLMMCFPYHLEFLPLLILLFFLLILLLLVLLFIPLLRPL
LFLPVSALLFFGEFLLILIRLLSPPSFLLWLWLDVDVVGGPAFLFCCIFV
FFWFVPRHIYIH*
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mRNA from alignment at scaffold_9:623106..623686-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4787 ID=mRNA_4787|Name=jgi.p|Nanoce1779_2|587902|organism=Nannochloropsis oceanica|type=mRNA|length=581bp|location=Sequence derived from alignment at scaffold_9:623106..623686- (Nannochloropsis oceanica)
GCACTCTCCTGACATGCAGCAGCTTGTCAGGTCCGTTATTGTGATGTGTT
TGATGATGTGTTTTCCTTATCATTTAGAGTTTCTTCCTCTTCTCATCCTT
CTGTTTTTCCTTCTTATTCTTCTCCTTCTGGTTCTCCTTTTTATTCCTCT
TCTTCGCCCTCTTCTCTTTCTTCCTGTGTCAGCACTGTTATTTTTTGGGG
AGTTTCTTCTTATTCTGATTCGGCTTCTTTCCCCTCCTTCTTTTTTGTTG
TGGTTATGGTTAGACGTCGATGTTGTGGGAGGGCCTGCATTCCTCTTCTG
TTGCATATTCGTCTTTTTTTGGTTTGTGCCACGACATATATATATACACT
AGGATTTAAAGATCAAACAACAAAAAAGACAAACAAACAAGCACCTACAC
ACCCACACGCCCACACATACCCACACCTTCCTCTTTCTTTTCCCTCATAC
GGGCACCTTTTCCCTCTTCATCTCTCGTCTTTCTATAGTCCCACATATCT
CCAAAAATTCAAACCAAAGCGTCTCACATCCAGGCATTAATCGCAATCCT
GCTCAGCGAGCAGTCAATAGCACATATGCTC
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Coding sequence (CDS) from alignment at scaffold_9:623106..623686-

>mRNA_4787 ID=mRNA_4787|Name=jgi.p|Nanoce1779_2|587902|organism=Nannochloropsis oceanica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_9:623106..623686- (Nannochloropsis oceanica)
ATGCAGCAGCTTGTCAGGTCCGTTATTGTGATGTGTTTGATGATGTGTTT
TCCTTATCATTTAGAGTTTCTTCCTCTTCTCATCCTTCTGTTTTTCCTTC
TTATTCTTCTCCTTCTGGTTCTCCTTTTTATTCCTCTTCTTCGCCCTCTT
CTCTTTCTTCCTGTGTCAGCACTGTTATTTTTTGGGGAGTTTCTTCTTAT
TCTGATTCGGCTTCTTTCCCCTCCTTCTTTTTTGTTGTGGTTATGGTTAG
ACGTCGATGTTGTGGGAGGGCCTGCATTCCTCTTCTGTTGCATATTCGTC
TTTTTTTGGTTTGTGCCACGACATATATATATACACTAG
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Synonyms
Publications