jgi.p|Nanoce1779_2|443193, mRNA_4786 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|443193
Unique NamemRNA_4786
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1105
Alignment locationscaffold_9:621821..623096 -

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Properties
Property NameValue
TranscriptId443279
TrackFilteredModels2
ProteinId443193
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:621821..623096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|443193gene_4786Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|443193mRNA_4786-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4786CDS_4786Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4786 ID=mRNA_4786|Name=jgi.p|Nanoce1779_2|443193|organism=Nannochloropsis oceanica|type=mRNA|length=1105bp
CCTCCCTCCCCTTCTTCTTTCCCCCACAAAACAGACACAGACACAGACAG
ACAGAGAAAGCGTAATGACTGAGAAAACGCCCTTCTGATCGTGTCTGTGC
GCTCACTCTCAACGTGATTGGGTGCATGTGAGTATTACTACTTGTTGCTT
TTATCGTAATTTCATATATCGAGCAAGAAGCAAAGCTACACAACCTGCTC
GCTTTTCCATGCTTAACTTTCTCCCTTCCCTCCCTCCCTTTCTTTCGTCT
CTCACTCTGTACAAGTTGCTATAACTCTATCATGAAATTTCTTATCATTC
TCTTCGCGCTTATGCTTCATCCGTTGTGCGTTATTATCCTATACTCCACC
CCGCACATGTTCCCCCCTCTTTTTCCTCCCTCACTTCATGACCCCCTCTC
ACACATATTTTCTATCTGTCATCTGTCAATCATTTTCTTCCATCTCCTTC
GTCTCCTCTACCAGTCCAAGCATTCTCAATCTTGCTTTTCCCCCTCTTTT
CTATTCCTATCCAGGCACATGACGAGCACGAGCTACAAACGTCAATATTG
TGTTTTCCCTCTCTCTCCACCTTCTCTTCTCCTCTTTTCCCTCAGTCTCA
TTGCTTGCCTGTACATGGTATTGTTGGCCCACTTATGCAATGGATCAAAT
GCAACCGATATCCTTCCCTCCTTCCCTTCCTCCCTCTCCCTCTCGTGGCC
TGCATGCAGGTATGATACAGGCACTTCGCACAAATACTCACTCCCTCCCT
CCCTCCCTCCGTCCCCTCTAGAAAGCAATACTATGTCTTCGCATCCGACG
GACGGGCAACTCCTCTTCTTCCTTTTCCTCCTCCTCTTCCTTGGATAGCA
ACTTCACGAAGCGTCCCTTCACACGTATGCGCTTGTCGGCCAGGTTCTTG
CGGCATGAGTAACGGATCTTCTTCTTCCACACCCGTCGTTGCCGTTTCTC
ACGAAAACGAGCGATGATGGCGTCACGTTCGTCCTGTTCGACGGAAATGA
ATGAAGAGATAGTAAGGAGTGAGGAGGAGGGGAAATTGAAAAACATTTAA
TTAAACGAAGAGAGAAAATAAACCACCGAGGCAACAAAACCAAGTCTAAT
AATCC
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protein sequence of jgi.p|Nanoce1779_2|443193

>mRNA_4786-protein ID=mRNA_4786-protein|Name=jgi.p|Nanoce1779_2|443193|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MKFLIILFALMLHPLCVIILYSTPHMFPPLFPPSLHDPLSHIFSICHLSI
IFFHLLRLLYQSKHSQSCFSPSFLFLSRHMTSTSYKRQYCVFPLSPPSLL
LFSLSLIACLYMVLLAHLCNGSNATDILPSFPSSLSLSWPACRYDTGTSH
KYSLPPSLPPSPLESNTMSSHPTDGQLLFFLFLLLFLG*
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mRNA from alignment at scaffold_9:621821..623096-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4786 ID=mRNA_4786|Name=jgi.p|Nanoce1779_2|443193|organism=Nannochloropsis oceanica|type=mRNA|length=1276bp|location=Sequence derived from alignment at scaffold_9:621821..623096- (Nannochloropsis oceanica)
CCTCCCTCCCCTTCTTCTTTCCCCCACAAAACAGACACAGACACAGACAG
ACAGAGAAAGCGTAATGACTGAGAAAACGCCCTTCTGATCGTGTCTGTGC
GCTCACTCTCAACGTGATTGGGTGCATGTGAGTATTACTACTTGTTGCTT
TTATCGTAATTTCATATATCGAGCAAGAAGCAAAGCTACACAACCTGCTC
GCTTTTCCATGCTTAACTTTCTCCCTTCCCTCCCTCCCTTTCTTTCGTCT
CTCACTCTGTACAAGTTGCTATAACTCTATCATGAAATTTCTTATCATTC
TCTTCGCGCTTATGCTTCATCCGTTGTGCGTTATTATCCTATACTCCACC
CCGCACATGTTCCCCCCTCTTTTTCCTCCCTCACTTCATGACCCCCTCTC
ACACATATTTTCTATCTGTCATCTGTCAATCATTTTCTTCCATCTCCTTC
GTCTCCTCTACCAGTCCAAGCATTCTCAATCTTGCTTTTCCCCCTCTTTT
CTATTCCTATCCAGGCACATGACGAGCACGAGCTACAAACGTCAATATTG
TGTTTTCCCTCTCTCTCCACCTTCTCTTCTCCTCTTTTCCCTCAGTCTCA
TTGCTTGCCTGTACATGGTATTGTTGGCCCACTTATGCAATGGATCAAAT
GCAACCGATATCCTTCCCTCCTTCCCTTCCTCCCTCTCCCTCTCGTGGCC
TGCATGCAGGTATGATACAGGCACTTCGCACAAATACTCACTCCCTCCCT
CCCTCCCTCCGTCCCCTCTAGAAAGCAATACTATGTCTTCGCATCCGACG
GACGGGCAACTCCTCTTCTTCCTTTTCCTCCTCCTCTTCCTTTTCCTCCT
CCTCCTCCTCCTCCATCTCCTCGCTCTCCTCCGATTCCTCCCCTCCTCCC
TCCTCCACCCTTTCTCCCACCACCCCCTCCTCAATCACTGCCAATGTATG
CCCTGACACCGAGCGACCCATCCCCCCTCCCTCAGTCCCTCCCTCCCTCC
CTCCTTCCTCCTTGGATAGCAACTTCACGAAGCGTCCCTTCACACGTATG
CGCTTGTCGGCCAGGTTCTTGCGGCATGAGTAACGGATCTTCTTCTTCCA
CACCCGTCGTTGCCGTTTCTCACGAAAACGAGCGATGATGGCGTCACGTT
CGTCCTGTTCGACGGAAATGAATGAAGAGATAGTAAGGAGTGAGGAGGAG
GGGAAATTGAAAAACATTTAATTAAACGAAGAGAGAAAATAAACCACCGA
GGCAACAAAACCAAGTCTAATAATCC
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Coding sequence (CDS) from alignment at scaffold_9:621821..623096-

>mRNA_4786 ID=mRNA_4786|Name=jgi.p|Nanoce1779_2|443193|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_9:621821..623096- (Nannochloropsis oceanica)
TCCTTGGATAGATGAAATTTCTTATCATTCTCTTCGCGCTTATGCTTCAT
CCGTTGTGCGTTATTATCCTATACTCCACCCCGCACATGTTCCCCCCTCT
TTTTCCTCCCTCACTTCATGACCCCCTCTCACACATATTTTCTATCTGTC
ATCTGTCAATCATTTTCTTCCATCTCCTTCGTCTCCTCTACCAGTCCAAG
CATTCTCAATCTTGCTTTTCCCCCTCTTTTCTATTCCTATCCAGGCACAT
GACGAGCACGAGCTACAAACGTCAATATTGTGTTTTCCCTCTCTCTCCAC
CTTCTCTTCTCCTCTTTTCCCTCAGTCTCATTGCTTGCCTGTACATGGTA
TTGTTGGCCCACTTATGCAATGGATCAAATGCAACCGATATCCTTCCCTC
CTTCCCTTCCTCCCTCTCCCTCTCGTGGCCTGCATGCAGGTATGATACAG
GCACTTCGCACAAATACTCACTCCCTCCCTCCCTCCCTCCGTCCCCTCTA
GAAAGCAATACTATGTCTTCGCATCCGACGGACGGGCAACTCCTCTTCTT
CCTTTTCCTCCTCCTCTTCCTTGGATAGATGAAATTTCTTATCATTCTCT
TCGCGCTTATGCTTCATCCGTTGTGCGTTATTATCCTATACTCCACCCCG
CACATGTTCCCCCCTCTTTTTCCTCCCTCACTTCATGACCCCCTCTCACA
CATATTTTCTATCTGTCATCTGTCAATCATTTTCTTCCATCTCCTTCGTC
TCCTCTACCAGTCCAAGCATTCTCAATCTTGCTTTTCCCCCTCTTTTCTA
TTCCTATCCAGGCACATGACGAGCACGAGCTACAAACGTCAATATTGTGT
TTTCCCTCTCTCTCCACCTTCTCTTCTCCTCTTTTCCCTCAGTCTCATTG
CTTGCCTGTACATGGTATTGTTGGCCCACTTATGCAATGGATCAAATGCA
ACCGATATCCTTCCCTCCTTCCCTTCCTCCCTCTCCCTCTCGTGGCCTGC
ATGCAGGTATGATACAGGCACTTCGCACAAATACTCACTCCCTCCCTCCC
TCCCTCCGTCCCCTCTAGAAAGCAATACTATGTCTTCGCATCCGACGGAC
GGGCAACTCCTCTTCTTCCTTTTCCTCCTCCTCT
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Synonyms
Publications