jgi.p|Nanoce1779_2|443110, mRNA_4785 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|443110
Unique NamemRNA_4785
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length681
Alignment locationscaffold_9:620459..621785 -

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Properties
Property NameValue
TranscriptId443196
TrackFilteredModels2
ProteinId443110
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:620459..621785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|443110gene_4785Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|443110mRNA_4785-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4785CDS_4785Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4785 ID=mRNA_4785|Name=jgi.p|Nanoce1779_2|443110|organism=Nannochloropsis oceanica|type=mRNA|length=681bp
CCTCGTATAAATCCCGATCCGGCCGTGCTTATTATAAACATCCGCGTACT
TCGCAAGCATGTGCGGCAAAATGCTGCCATTTCTCTGCCCCCCCTCCCTC
CCTGCCCCTCCAGCTGCCGCCGCGGCGGCCGCTGCTGCTGCTGCTGCTGC
TGCAGTCGCGGCAGCTGACGCCATGGTATTGGTCCTTCCGGGCGAACTTT
TCCCGCTCTGGACGTTGATGATGCTGCTGCTGCTGCTGCTGCTGTTGGGG
TGGAGTGGAGGCAAGCCACCCGAAAGGTTGCTACGGGCAAAAGCCGTGCC
TGCCCCTGCTCCAGTTCCAGCGCCTCCCATCGCTCCAGTACCAGCAGCAG
ACTCGTACCGCCGCCACACATCGCATCCCTCTGGATTAGAGGCTGCCCGC
AGAGGCAAGACAATCTAACAAGTCCTCGTAACCCTTCGCCCCACTTCTTC
TACTCCTACTGCTTGTAGTGCTCCGAGGGAATGGCAGCAGCGACTAGTGT
GTCGTCGTGTTCTGAAGAGGCTCCCTCCTCCTCGTCATTGTTAAGGTGGG
GGCCAGGGCTGTTACCGACACTTCCAACACTACTGGCCACGGAGCTGCCG
GCGGTGGTGGCATTGCTGGAGGTCTCACTGATAGACGCCCTGTTGGGTGT
GGGGAGGTGGGGGAGAAGCAGGAAGAGGAGG
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protein sequence of jgi.p|Nanoce1779_2|443110

>mRNA_4785-protein ID=mRNA_4785-protein|Name=jgi.p|Nanoce1779_2|443110|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MCGKMLPFLCPPSLPAPPAAAAAAAAAAAAAAVAAADAMVLVLPGELFPL
WTLMMLLLLLLLLGWSGGKPPERLLRAKAVPAPAPVPAPPIAPVPAADSY
RRHTSHPSGLEAARRGKTI*
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mRNA from alignment at scaffold_9:620459..621785-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4785 ID=mRNA_4785|Name=jgi.p|Nanoce1779_2|443110|organism=Nannochloropsis oceanica|type=mRNA|length=1327bp|location=Sequence derived from alignment at scaffold_9:620459..621785- (Nannochloropsis oceanica)
CCTCGTATAAATCCCGATCCGGCCGTGCTTATTATAAACATCCGCGTACT
TCGCAAGCATGTGCGGCAAAATGCTGCCATTTCTCTGCCCCCCCTCCCTC
CCTGCCCCTCCAGCTGCCGCCGCGGCGGCCGCTGCTGCTGCTGCTGCTGC
TGCAGTCGCGGCAGCTGACGCCATGGTATTGGTCCTTCCGGGCGAACTTT
TCCCGCTCTGGACGTTGATGATGCTGCTGCTGCTGCTGCTGCTGTTGGGG
TGGAGTGGAGGCAAGCCACCCGAAAGGTTGCTACGGGCAAAAGCCGTGCC
TGCCCCTGCTCCAGTTCCAGCGCCTCCCATCGCTCCAGTACCAGCAGCAG
ACTCGTACCGCCGCCACACATCGCATCCCTCTGGATTAGAGGCTGCCCGC
GCCCGACGCCCTCCCCCTCCCTCCCCCCCACCCTCCTCCTCCTCCCCTCT
ACCATGGCCCCGTATCCCCGTCGCCGCATAGTAATACCGACCTGCCTCTT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCGCTCTCTTCC
ATCCGTGCCGCCATCGCCGCTAACATTTGACTCGGGGCGAAAGGACTCGA
AAACTGGCCTCCTTCCCTCCCTCCCTCCCTTCCCTGGCCGCCACTACGGG
ATGGGATGACGTCCATGTCATCCACCGACATAGTCATTCGGGAAACACGA
CGGTGTAACACTTCCAACGGCCCCAACGGCGCGCGGTTCGATGCCAGAGA
GGCAAGACAATCTAACAAGTCCTCGTAACCCTTCGCCCCACTTCTTCTAC
TCCTACTGCTTGTAGTGCTGCCGCCCTGGCTCATGTCCTGTGGATCTGTG
TTGTTGGCGATAGTGCTACTATTGTTGCTAATGCTGTTGCTGCTGCCGCC
GTTGTTGTTGCTGGTGCTGCTGCTGTTGCAACTGCTTCGGGTGTCAGCAA
AAGTGCTCGTGAGCTTCTGCATGTCAGGTAAGACCTTAGACAAAATACTC
GCAGCCTCCGCGTCCTCCGAATCCATCTCTACAGATACGTCACGCTTGAC
CTCTCCCGCGGCCGGGACGACAAGCCCTGCAGGAAGGGTGACCTGACGGA
GGGCGGGAAGGGCAGCAGCCGAGGGAATGGCAGCAGCGACTAGTGTGTCG
TCGTGTTCTGAAGAGGCTCCCTCCTCCTCGTCATTGTTAAGGTGGGGGCC
AGGGCTGTTACCGACACTTCCAACACTACTGGCCACGGAGCTGCCGGCGG
TGGTGGCATTGCTGGAGGTCTCACTGATAGACGCCCTGTTGGGTGTGGGG
AGGTGGGGGAGAAGCAGGAAGAGGAGG
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Coding sequence (CDS) from alignment at scaffold_9:620459..621785-

>mRNA_4785 ID=mRNA_4785|Name=jgi.p|Nanoce1779_2|443110|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_9:620459..621785- (Nannochloropsis oceanica)
AGAGGCAAGACAATCTAAATGTGCGGCAAAATGCTGCCATTTCTCTGCCC
CCCCTCCCTCCCTGCCCCTCCAGCTGCCGCCGCGGCGGCCGCTGCTGCTG
CTGCTGCTGCTGCAGTCGCGGCAGCTGACGCCATGGTATTGGTCCTTCCG
GGCGAACTTTTCCCGCTCTGGACGTTGATGATGCTGCTGCTGCTGCTGCT
GCTGTTGGGGTGGAGTGGAGGCAAGCCACCCGAAAGGTTGCTACGGGCAA
AAGCCGTGCCTGCCCCTGCTCCAGTTCCAGCGCCTCCCATCGCTCCAGTA
CCAGCAGCAGACTCGTACCGCCGCCACACATCGCATCCCTCTGGATTAGA
GGCTGCCCGCAGAGGCAAGACAATCTAAATGTGCGGCAAAATGCTGCCAT
TTCTCTGCCCCCCCTCCCTCCCTGCCCCTCCAGCTGCCGCCGCGGCGGCC
GCTGCTGCTGCTGCTGCTGCTGCAGTCGCGGCAGCTGACGCCATGGTATT
GGTCCTTCCGGGCGAACTTTTCCCGCTCTGGACGTTGATGATGCTGCTGC
TGCTGCTGCTGCTGTTGGGGTGGAGTGGAGGCAAGCCACCCGAAAGGTTG
CTACGGGCAAAAGCCGTGCCTGCCCCTGCTCCAGTTCCAGCGCCTCCCAT
CGCTCCAGTACCAGCAGCAGACTCGTACCGCCGCCACACATCGCATCCCT
CTGGATTAGAGGCTGCCCGC
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Synonyms
Publications