jgi.p|Nanoce1779_2|587896, mRNA_4784 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587896
Unique NamemRNA_4784
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length944
Alignment locationscaffold_9:619887..621151 -

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Properties
Property NameValue
TranscriptId587982
TrackFilteredModels2
ProteinId587896
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:619887..621151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587896gene_4784Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587896mRNA_4784-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4784CDS_4784Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4784 ID=mRNA_4784|Name=jgi.p|Nanoce1779_2|587896|organism=Nannochloropsis oceanica|type=mRNA|length=944bp
TGGCCGCCACTACGGGATGGGATGACGTCCATGTCATCCACCGACATAGT
CATTCGGGAAACACGACGGTGTAACACTTCCAACGGCCCCAACGGCGCGC
GGTTCGATGCCAGAGAGGCAAGACAATCTAACAAGTCCTCGTAACCCTTC
GCCCCACTTCTTCTACTCCTACTGCTTGTAGTGCTGCCGCCCTGGCTCAT
GTCCTGTGGATCTGTGTTGTTGGCGATAGTGCTACTATTGTTGCTAATGC
TGTTGCTGCTGCCGCCGTTGTTGTTGCTGGTGCTGCTGCTGTTGCAACTG
CTTCGGGTGTCAGCAAAAGTGCTCGTGAGCTTCTGCATGTCAGGTAAGAC
CTTAGACAAAATACTCGCAGCCTCCGCGTCCTCCGAATCCATCTCTACAG
ATACGTCACGCTTGACCTCTCCCGCGGCCGGGACGACAAGCCCTGCAGGA
AGGGTGACCTGACGGAGGGCGGGAAGGGCAGCAGCCGAGGGAATGGCAGC
AGCGACTAGTGTGTCGTCGTGTTCTGAAGAGGCTCCCTCCTCCTCGTCAT
TGTTAAGGTGGGGGCCAGGGCTGTTACCGACACTTCCAACACTACTGGCC
ACGGAGCTGCCGGCGGTGGTGGCATTGCTGGAGGTCTCACTGATAGACGC
CCATTCCGATCCGGTCTTAAGTTCCCAGGGCGTGGCCGCAGCCGGGACGG
GGTCTGTCGTGACACCACCTGCCTTAGTCGCCGTCGATGTTGCAGCAGGG
TGCGTGGCTTTGTTGACCGCGGCGGGAGCACCAGTTATCACATCCGCCGT
GGGAGCGGCCGGTGCAGGGGTAGCCATGATCATTGTTCTTCTGAAGTGGG
GTGTTTTTAGGTTCGACCCGTCTGGGTGCGGCTGTGCGGTCACACAAGCA
GCGGGTTTTACCAACCGCAGAAGCTTTGCCTTAGTTGATGCTGT
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protein sequence of jgi.p|Nanoce1779_2|587896

>mRNA_4784-protein ID=mRNA_4784-protein|Name=jgi.p|Nanoce1779_2|587896|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MSCGSVLLAIVLLLLLMLLLLPPLLLLVLLLLQLLRVSAKVLVSFCMSGK
TLDKILAASASSESISTDTSRLTSPAAGTTSPAGRV
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mRNA from alignment at scaffold_9:619887..621151-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4784 ID=mRNA_4784|Name=jgi.p|Nanoce1779_2|587896|organism=Nannochloropsis oceanica|type=mRNA|length=1265bp|location=Sequence derived from alignment at scaffold_9:619887..621151- (Nannochloropsis oceanica)
TGGCCGCCACTACGGGATGGGATGACGTCCATGTCATCCACCGACATAGT
CATTCGGGAAACACGACGGTGTAACACTTCCAACGGCCCCAACGGCGCGC
GGTTCGATGCCAGAGAGGCAAGACAATCTAACAAGTCCTCGTAACCCTTC
GCCCCACTTCTTCTACTCCTACTGCTTGTAGTGCTGCCGCCCTGGCTCAT
GTCCTGTGGATCTGTGTTGTTGGCGATAGTGCTACTATTGTTGCTAATGC
TGTTGCTGCTGCCGCCGTTGTTGTTGCTGGTGCTGCTGCTGTTGCAACTG
CTTCGGGTGTCAGCAAAAGTGCTCGTGAGCTTCTGCATGTCAGGTAAGAC
CTTAGACAAAATACTCGCAGCCTCCGCGTCCTCCGAATCCATCTCTACAG
ATACGTCACGCTTGACCTCTCCCGCGGCCGGGACGACAAGCCCTGCAGGA
AGGGTGACCTGACGGAGGGCGGGAAGGGCAGCAGCCGAGGGAATGGCAGC
AGCGACTAGTGTGTCGTCGTGTTCTGAAGAGGCTCCCTCCTCCTCGTCAT
TGTTAAGGTGGGGGCCAGGGCTGTTACCGACACTTCCAACACTACTGGCC
ACGGAGCTGCCGGCGGTGGTGGCATTGCTGGAGGTCTCACTGATAGACGC
CCTGTTGGGTGTGGGGAGGTGGGGGAGAAGCAGGAAGAGGAGGAGGGGGG
ATAAGGGACAGAATCTGAATGGATAAAGCAAAGAGAAGCTTAGGCTAGCT
GGTGGTGCGAGAACCAGCCTGGATAGAAGTACAAGAGGAGAGGGAGAGAG
AGTTTGGGGTTTTATGCTTTTAGGTTGCTTAATGCATGCGAGTTGGTCAA
CAGAATCTCGGTCAGTCCGCCCTTAGGGCAGGCAAAGCAGCAACCACCGC
CTTCAAGCTCCGCCTCCTCCCCCCACTCCTTCCTCCATTCTTCCCTCCTT
TCAAACGTTCAGACAAACGTACCATTCCGATCCGGTCTTAAGTTCCCAGG
GCGTGGCCGCAGCCGGGACGGGGTCTGTCGTGACACCACCTGCCTTAGTC
GCCGTCGATGTTGCAGCAGGGTGCGTGGCTTTGTTGACCGCGGCGGGAGC
ACCAGTTATCACATCCGCCGTGGGAGCGGCCGGTGCAGGGGTAGCCATGA
TCATTGTTCTTCTGAAGTGGGGTGTTTTTAGGTTCGACCCGTCTGGGTGC
GGCTGTGCGGTCACACAAGCAGCGGGTTTTACCAACCGCAGAAGCTTTGC
CTTAGTTGATGCTGT
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Coding sequence (CDS) from alignment at scaffold_9:619887..621151-

>mRNA_4784 ID=mRNA_4784|Name=jgi.p|Nanoce1779_2|587896|organism=Nannochloropsis oceanica|type=CDS|length=259bp|location=Sequence derived from alignment at scaffold_9:619887..621151- (Nannochloropsis oceanica)
ATGTCCTGTGGATCTGTGTTGTTGGCGATAGTGCTACTATTGTTGCTAAT
GCTGTTGCTGCTGCCGCCGTTGTTGTTGCTGGTGCTGCTGCTGTTGCAAC
TGCTTCGGGTGTCAGCAAAAGTGCTCGTGAGCTTCTGCATGTCAGGTAAG
ACCTTAGACAAAATACTCGCAGCCTCCGCGTCCTCCGAATCCATCTCTAC
AGATACGTCACGCTTGACCTCTCCCGCGGCCGGGACGACAAGCCCTGCAG
GAAGGGTGA
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Synonyms
Publications