jgi.p|Nanoce1779_2|565557, mRNA_4782 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565557
Unique NamemRNA_4782
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1074
Alignment locationscaffold_9:618124..619197 +

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Properties
Property NameValue
TranscriptId565643
TrackFilteredModels2
ProteinId565557
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:618124..619197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565557gene_4782Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565557mRNA_4782-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4782CDS_4782Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4782 ID=mRNA_4782|Name=jgi.p|Nanoce1779_2|565557|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp
ATGACGTACGAAGAACGCCGAGCCAAGTTTTTGCGGCCCAAGCAGAGCGA
TCGAGGGACTTTTAGTGGACGAGGACGAGGAGGAGGAGTAGGAAGGGGAG
GGTTCCAGCACGGAAATAGCAACCGGCCTGGATCGCACAAGTGGAAGGCG
CTGAAAACGTTTTGTTATGGGTGTAGACAGCAAGGACATATGTTGCAGGA
TTGTCCAGAGGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCCGAGG
CCGCGGGCAGCAGAAGCAGTGCCAAGAGGATCTGTTTTAATTGCGGTTCG
ATGTTGCATCGACTGGCGCACTGTCCGCGACCGCGTGTGAATGGTGGGTC
TACGTACGCGACGTGCTTTGTGTGCGGGGAGCAGGGGCATTTGTCTTCTA
TGTGCGCAAAGAATGAGAAGGGGTTGTACCCCAAGGGAGGGGCCTGCCAT
AGGTGTGGAAGGAAGGACCATTTGGCGGCGAGGTGTCCGACGAAGGAGAG
GGAGGAGGGGGAAGGAAAGAAGGAAGAGAAAGAAGGAGAGGAGGAGGAGG
AGGAGGAGGAGGAAGAGAAAGAGAGAGGGGTGGAAGAAGACGACAGGGAG
GAGGAGGATGAGGAGGTGCCTACAACCGCTATAACTAAAGCGGTAGCAAA
AAGCAAGGGAAAAGTGGAGGAGCGAAATACGAAGGGGAAAGAGATGGCGT
CGACCAGCGCCAAGAAGAGAGCAGCTGTGACAGCAACAAAGCCCGTCAAA
CCCCAAGGAGGGGATGATTTAAACGATGACGATTTTTTGTATGAGGACAT
GGATGGCGATGGTAGTCAGGAAGAGGAAGGAGAAGAAGTGGCGGGAGCGC
CATCGCAACACAAGACGGGCAGCGGTGAGGATGGGAGAGAAGGAAGGAGG
GGTCGAGGAGGGAGAGAAACAGGAAGGGGAGGGAGGGGAGGGAGGGGGGG
ACGAGGATATGGTTGTAGTCGTGGGGCAGAGATGCGATCACGGGGAGGAG
AGAGCAAAGGAGAGGGAGCATCGGGGCCGAGTAAGAAGAGGGTCAAGTCG
ACACCCAAAACGGTGATGTTTTGA
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protein sequence of jgi.p|Nanoce1779_2|565557

>mRNA_4782-protein ID=mRNA_4782-protein|Name=jgi.p|Nanoce1779_2|565557|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MTYEERRAKFLRPKQSDRGTFSGRGRGGGVGRGGFQHGNSNRPGSHKWKA
LKTFCYGCRQQGHMLQDCPEAGGGGGGGGGGAEAAGSRSSAKRICFNCGS
MLHRLAHCPRPRVNGGSTYATCFVCGEQGHLSSMCAKNEKGLYPKGGACH
RCGRKDHLAARCPTKEREEGEGKKEEKEGEEEEEEEEEEKERGVEEDDRE
EEDEEVPTTAITKAVAKSKGKVEERNTKGKEMASTSAKKRAAVTATKPVK
PQGGDDLNDDDFLYEDMDGDGSQEEEGEEVAGAPSQHKTGSGEDGREGRR
GRGGRETGRGGRGGRGGRGYGCSRGAEMRSRGGESKGEGASGPSKKRVKS
TPKTVMF*
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mRNA from alignment at scaffold_9:618124..619197+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4782 ID=mRNA_4782|Name=jgi.p|Nanoce1779_2|565557|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp|location=Sequence derived from alignment at scaffold_9:618124..619197+ (Nannochloropsis oceanica)
ATGACGTACGAAGAACGCCGAGCCAAGTTTTTGCGGCCCAAGCAGAGCGA
TCGAGGGACTTTTAGTGGACGAGGACGAGGAGGAGGAGTAGGAAGGGGAG
GGTTCCAGCACGGAAATAGCAACCGGCCTGGATCGCACAAGTGGAAGGCG
CTGAAAACGTTTTGTTATGGGTGTAGACAGCAAGGACATATGTTGCAGGA
TTGTCCAGAGGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCCGAGG
CCGCGGGCAGCAGAAGCAGTGCCAAGAGGATCTGTTTTAATTGCGGTTCG
ATGTTGCATCGACTGGCGCACTGTCCGCGACCGCGTGTGAATGGTGGGTC
TACGTACGCGACGTGCTTTGTGTGCGGGGAGCAGGGGCATTTGTCTTCTA
TGTGCGCAAAGAATGAGAAGGGGTTGTACCCCAAGGGAGGGGCCTGCCAT
AGGTGTGGAAGGAAGGACCATTTGGCGGCGAGGTGTCCGACGAAGGAGAG
GGAGGAGGGGGAAGGAAAGAAGGAAGAGAAAGAAGGAGAGGAGGAGGAGG
AGGAGGAGGAGGAAGAGAAAGAGAGAGGGGTGGAAGAAGACGACAGGGAG
GAGGAGGATGAGGAGGTGCCTACAACCGCTATAACTAAAGCGGTAGCAAA
AAGCAAGGGAAAAGTGGAGGAGCGAAATACGAAGGGGAAAGAGATGGCGT
CGACCAGCGCCAAGAAGAGAGCAGCTGTGACAGCAACAAAGCCCGTCAAA
CCCCAAGGAGGGGATGATTTAAACGATGACGATTTTTTGTATGAGGACAT
GGATGGCGATGGTAGTCAGGAAGAGGAAGGAGAAGAAGTGGCGGGAGCGC
CATCGCAACACAAGACGGGCAGCGGTGAGGATGGGAGAGAAGGAAGGAGG
GGTCGAGGAGGGAGAGAAACAGGAAGGGGAGGGAGGGGAGGGAGGGGGGG
ACGAGGATATGGTTGTAGTCGTGGGGCAGAGATGCGATCACGGGGAGGAG
AGAGCAAAGGAGAGGGAGCATCGGGGCCGAGTAAGAAGAGGGTCAAGTCG
ACACCCAAAACGGTGATGTTTTGA
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Coding sequence (CDS) from alignment at scaffold_9:618124..619197+

>mRNA_4782 ID=mRNA_4782|Name=jgi.p|Nanoce1779_2|565557|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at scaffold_9:618124..619197+ (Nannochloropsis oceanica)
ATGACGTACGAAGAACGCCGAGCCAAGTTTTTGCGGCCCAAGCAGAGCGA
TCGAGGGACTTTTAGTGGACGAGGACGAGGAGGAGGAGTAGGAAGGGGAG
GGTTCCAGCACGGAAATAGCAACCGGCCTGGATCGCACAAGTGGAAGGCG
CTGAAAACGTTTTGTTATGGGTGTAGACAGCAAGGACATATGTTGCAGGA
TTGTCCAGAGGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCCGAGG
CCGCGGGCAGCAGAAGCAGTGCCAAGAGGATCTGTTTTAATTGCGGTTCG
ATGTTGCATCGACTGGCGCACTGTCCGCGACCGCGTGTGAATGGTGGGTC
TACGTACGCGACGTGCTTTGTGTGCGGGGAGCAGGGGCATTTGTCTTCTA
TGTGCGCAAAGAATGAGAAGGGGTTGTACCCCAAGGGAGGGGCCTGCCAT
AGGTGTGGAAGGAAGGACCATTTGGCGGCGAGGTGTCCGACGAAGGAGAG
GGAGGAGGGGGAAGGAAAGAAGGAAGAGAAAGAAGGAGAGGAGGAGGAGG
AGGAGGAGGAGGAAGAGAAAGAGAGAGGGGTGGAAGAAGACGACAGGGAG
GAGGAGGATGAGGAGGTGCCTACAACCGCTATAACTAAAGCGGTAGCAAA
AAGCAAGGGAAAAGTGGAGGAGCGAAATACGAAGGGGAAAGAGATGGCGT
CGACCAGCGCCAAGAAGAGAGCAGCTGTGACAGCAACAAAGCCCGTCAAA
CCCCAAGGAGGGGATGATTTAAACGATGACGATTTTTTGTATGAGGACAT
GGATGGCGATGGTAGTCAGGAAGAGGAAGGAGAAGAAGTGGCGGGAGCGC
CATCGCAACACAAGACGGGCAGCGGTGAGGATGGGAGAGAAGGAAGGAGG
GGTCGAGGAGGGAGAGAAACAGGAAGGGGAGGGAGGGGAGGGAGGGGGGG
ACGAGGATATGGTTGTAGTCGTGGGGCAGAGATGCGATCACGGGGAGGAG
AGAGCAAAGGAGAGGGAGCATCGGGGCCGAGTAAGAAGAGGGTCAAGTCG
ACACCCAAAACGGTGATGTTTTGA
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Synonyms
Publications