jgi.p|Nanoce1779_2|587882, mRNA_4780 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587882
Unique Name	mRNA_4780
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1775
Alignment location	scaffold_9:612899..615171 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587968
Track	FilteredModels2
ProteinId	587882

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:612899..615171 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587882	gene_4780	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587882	mRNA_4780-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4780	CDS_4780	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:612899..615171+
coding sequence from alignment at scaffold_9:612899..615171+

mRNA sequence

>mRNA_4780 ID=mRNA_4780|Name=jgi.p|Nanoce1779_2|587882|organism=Nannochloropsis oceanica|type=mRNA|length=1775bp
AACAGGAGGCGGAAGCGAGCGGGCTACGCCAGGACAAAACAGTGCCCTCT
CGCTGCGCCCTTGTGAAGCGGTTGAAAGGTTGGCTCCGGTGGTCATCTCG
TTGAACGTCGCGACCGTACGCATTCAAGGCTTCAGCTTCAGGAGTCTCTG
TGGAAAAATATAGAGTAAAAGATTAGCCACACATCAAACTTAGAACAAGT
ATGAAGTTCCTAATGGCAGCCTTGCTTGGCGTGACCAGTACACAGGCGTT
CTTGGGTATCCGTCCCTCTCCCGTCGTTTGTCCTCCCTCATCCCTGTCGA
AACGTGGTGCCACTACCCTGCACGACTCGGACGCCTTTCTCCCCCGTTCT
CCCCCCTTCCGCGCACCACAAAGCACGCAACATGCCGGTGAAGACTTGGA
CACGTTGCAAGGCCGGTTATTTGCCAGAGACACCCGACGCGTGATTTTGT
TTGACGGCGAATGCGGTTTCTGCTCGGATGTTGTTAATATTTTCATCAAT
TTTGATGGGGATCCTCGCGGGGCTTTTCGCTTCGCGTCCCTGCAAGGCGA
GATAGGACAAGAATTGTTGAAGGCCAACGGGATGGACACAAAGCATTTTA
ATACGATTGTATTGGTGGATAAGGAGCAGGTCTTTACCTCCTCCGACGCC
GTTCTTCAAATCGCCTCGCGGCTTAAGCAGCCCCTCCCTCAACTAGCCAA
GCTGGCCAAGGCCATCATTCCCCACGACATTCTAGACGCCCTCTACCACT
TTGTTTCATCGAATCGGCATTTGTTGGCAGGCGAGAAAGATTCCTGTCGC
ATCCCAAGCGAGAGTGAAATGGAGCGGTTCTTGGACCAATAGAAGACGAG
GAAGGGATGGAAAAAAGGGAGGAAGGCGGGAATGCATGGTAGAGACACAG
AATATGGATGGTGGTTGAAAATGTAGATATGAATTAGAGGGGCTGTGCTT
TTAGTAGGTGGGTTTTACGTCGCGTTTTTCCTGAATACTTTCCTCGTTTT
TGGTTGTTGAAATCAGGCACGGGATACGTTTTTGTTGTACGTGAGTAAAA
GAGGGGGATGGGAGGAATCATGAGTAAGGACGAAGATGAGAAACATCACG
AGAGAGAGGTGAGCAAGAGTGCTCCCAACACCAAAGAGACTACTTTTTTT
TCATACATTGATCTGATTTCCCCCTCCCTTTTTAAAAAAAACTAAATTAT
CTTTTTTCCCGCCGAGCGCCTTTTACCCACTGGGGCAACGAATGATCCTT
GCGTGCCTTGTCTAGGCACGTGTGGATTTGGGTGGGTTGTGTGTGCCTTG
AGAGCGTGTGTACCAAATGAGTAACGATTCCGGGAGGGGAGCAGGGCGAG
TAGAGGGAAGGAGAGCTGGAAGGACGGCCCATACACATACAATTTTGTCG
CCCCAGGCGTCTAGTAATATGTACGCAAACGTTCACAGAAAGAGGAGGAG
GAGGAGGAGGAGGAGCCTCCGCTCCACCCCACAAGAAAAATACGGAAGTA
ATGAGAAAGAGAGGGAGACTGAATATGACGGGAATAAGCACTCAAGGAAG
AAAAAGTGTGTGAAGACCAAATAGGGAGGAAGCGGCGCGGCGACGATGTG
ATGTATATAGGAAGGACGAAAAATACCATCTGCAGGAAAAGGATTAAATG
ACAACTAGGATCAAGACGCACACGAACATCCTGCTCTCTTTCTCTGTCGA
CCTTTGCTTTCCATGCCATCTATCCCCTCCTCCCTCTTTTCTTCGATAAA
GAAAGTACTAAGTCCACCAGCACCG

protein sequence of jgi.p|Nanoce1779_2|587882

>mRNA_4780-protein ID=mRNA_4780-protein|Name=jgi.p|Nanoce1779_2|587882|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MKFLMAALLGVTSTQAFLGIRPSPVVCPPSSLSKRGATTLHDSDAFLPRS
PPFRAPQSTQHAGEDLDTLQGRLFARDTRRVILFDGECGFCSDVVNIFIN
FDGDPRGAFRFASLQGEIGQELLKANGMDTKHFNTIVLVDKEQVFTSSDA
VLQIASRLKQPLPQLAKLAKAIIPHDILDALYHFVSSNRHLLAGEKDSCR
IPSESEMERFLDQ*

mRNA from alignment at scaffold_9:612899..615171+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4780 ID=mRNA_4780|Name=jgi.p|Nanoce1779_2|587882|organism=Nannochloropsis oceanica|type=mRNA|length=2273bp|location=Sequence derived from alignment at scaffold_9:612899..615171+ (Nannochloropsis oceanica)
AACAGGAGGCGGAAGCGAGCGGGCTACGCCAGGACAAAACAGTGCCCTCT
CGCTGCGCCCTTGTGAAGCGGTTGAAAGGTTGGCTCCGGTGGTCATCTCG
TTGAACGTCGCGACCGTACGCATTCAAGGCTTCAGCTTCAGGAGTCTCTG
TGGTACGTCGACGGTGTCAAGTTAACAGTGGGTGTGCTTGTTGCGATCCT
GGTTGCGCCACTGTTGTTCATGGGATGGAAAAGTAACAGCCGGGCGGGCA
AGCAGGAGAGGCATAGTCACGCTGTTTTCTCACTCCCTCCTGCCCTCCCT
TCCACAGGAAAAATATAGAGTAAAAGATTAGCCACACATCAAACTTAGAA
CAAGTATGAAGTTCCTAATGGCAGCCTTGCTTGGCGTGACCAGTACACAG
GCGTTCTTGGGTATCCGTCCCTCTCCCGTCGTTTGTCCTCCCTCATCCCT
GTCGAAACGTGGTGCCACTACCCTGCACGACTCGGACGCCTTTCTCCCCC
GTTCTCCCCCCTTCCGCGCACCACAAAGCACGCAACATGCCGGTGAAGAC
TTGGACACGTTGCAAGGCCGGTTATTTGCCAGAGACACCCGACGCGTGAT
TTTGTTTGACGGCGGTATGTGAACCTGTTTCGTTGGTTTGGGTGGTGTGA
GCCCAAGTGCTTTTGTACTTGTGTGTATGTCCATGAACTTTGCCTTCTTT
CCTTCCCCCTCATTTCCCTTCCCTCTTTTTTTGTGCTCTACCGTCATAAA
CAGAATGCGGTTTCTGCTCGGATGTTGTTAATATTTTCATCAATTTTGAT
GGGGATCCTCGCGGGGCTTTTCGCTTCGCGTCCCTGCAAGGCGAGATAGG
ACAAGAATTGTTGAAGGCCAACGGGATGGACACAAAGCATTTTAATACGA
TTGTATTGGTGGATAAGGAGCAGGTACAACTTTTGAGCTCGCTGAGTGCT
CCATGGAATGTGTGTGGGTGAATTTTGTGAAGAGCTACGTGCATACATGC
ATGGGCACCAAAAAGGCAAGAAAAAGCCTCATGAGTGCTTTGATTACTCC
GTAAAATGTTTGGAATCACAGTGCTTCAATCCTCACTCACATCCCCTCCC
CTCTTTTTCCCCCTCCCACACACCTAGGTCTTTACCTCCTCCGACGCCGT
TCTTCAAATCGCCTCGCGGCTTAAGCAGCCCCTCCCTCAACTAGCCAAGC
TGGCCAAGGCCATCATTCCCCACGACATTCTAGACGCCCTCTACCACTTT
GTTTCATCGAATCGGCATTTGTTGGCAGGCGAGAAAGATTCCTGTCGCAT
CCCAAGCGAGAGTGAAATGGAGCGGTTCTTGGACCAATAGAAGACGAGGA
AGGGATGGAAAAAAGGGAGGAAGGCGGGAATGCATGGTAGAGACACAGAA
TATGGATGGTGGTTGAAAATGTAGATATGAATTAGAGGGGCTGTGCTTTT
AGTAGGTGGGTTTTACGTCGCGTTTTTCCTGAATACTTTCCTCGTTTTTG
GTTGTTGAAATCAGGCACGGGATACGTTTTTGTTGTACGTGAGTAAAAGA
GGGGGATGGGAGGAATCATGAGTAAGGACGAAGATGAGAAACATCACGAG
AGAGAGGTGAGCAAGAGTGCTCCCAACACCAAAGAGACTACTTTTTTTTC
ATACATTGATCTGATTTCCCCCTCCCTTTTTAAAAAAAACTAAATTATCT
TTTTTCCCGCCGAGCGCCTTTTACCCACTGGGGCAACGAATGATCCTTGC
GTGCCTTGTCTAGGCACGTGTGGATTTGGGTGGGTTGTGTGTGCCTTGAG
AGCGTGTGTACCAAATGAGTAACGATTCCGGGAGGGGAGCAGGGCGAGTA
GAGGGAAGGAGAGCTGGAAGGACGGCCCATACACATACAATTTTGTCGCC
CCAGGCGTCTAGTAATATGTACGCAAACGTTCACAGAAAGAGGAGGAGGA
GGAGGAGGAGGAGCCTCCGCTCCACCCCACAAGAAAAATACGGAAGTAAT
GAGAAAGAGAGGGAGACTGAATATGACGGGAATAAGCACTCAAGGAAGAA
AAAGTGTGTGAAGACCAAATAGGGAGGAAGCGGCGCGGCGACGATGTGAT
GTATATAGGAAGGACGAAAAATACCATCTGCAGGAAAAGGATTAAATGAC
AACTAGGATCAAGACGCACACGAACATCCTGCTCTCTTTCTCTGTCGACC
TTTGCTTTCCATGCCATCTATCCCCTCCTCCCTCTTTTCTTCGATAAAGA
AAGTACTAAGTCCACCAGCACCG

Coding sequence (CDS) from alignment at scaffold_9:612899..615171+

>mRNA_4780 ID=mRNA_4780|Name=jgi.p|Nanoce1779_2|587882|organism=Nannochloropsis oceanica|type=CDS|length=1926bp|location=Sequence derived from alignment at scaffold_9:612899..615171+ (Nannochloropsis oceanica)
ATGAAGTTCCTAATGGCAGCCTTGCTTGGCGTGACCAGTACACAGGCGTT
CTTGGGTATCCGTCCCTCTCCCGTCGTTTGTCCTCCCTCATCCCTGTCGA
AACGTGGTGCCACTACCCTGCACGACTCGGACGCCTTTCTCCCCCGTTCT
CCCCCCTTCCGCGCACCACAAAGCACGCAACATGCCGGTGAAGACTTGGA
CACGTTGCAAGGCCGGTTATTTGCCAGAGACACCCGACGCGTGATTTTGT
TTGACGGCGAATGCGGTTTCTGCTCGGATGTTGTTAATATTTTCATCAAT
TTTGATGGGGATCCTCGCGGGGCTTTTCGCTTCGCGTCCCTGCAAGGCGA
GATAGGACAAGAATTGTTGAAGGCCAACGGGATGGACACAAAGCATTTTA
ATACGATTGTATTGGTGGATAAGGAGCAGGTCTTTACCTCCTCCGACGCC
GTTCTTCAAATCGCCTCGCGGCTTAAGCAGCCCCTCCCTCAACTAGCCAA
GCTGGCCAAGGCCATCATTCCCCACGACATTCTAGACGCCCTCTACCACT
TTGTTTCATCGAATCGGCATTTGTTGGCAGGCGAGAAAGATTCCTGTCGC
ATCCCAAGCGAGAGTGAAATGGAGCGGTTCTTGGACCAATAGATGAAGTT
CCTAATGGCAGCCTTGCTTGGCGTGACCAGTACACAGGCGTTCTTGGGTA
TCCGTCCCTCTCCCGTCGTTTGTCCTCCCTCATCCCTGTCGAAACGTGGT
GCCACTACCCTGCACGACTCGGACGCCTTTCTCCCCCGTTCTCCCCCCTT
CCGCGCACCACAAAGCACGCAACATGCCGGTGAAGACTTGGACACGTTGC
AAGGCCGGTTATTTGCCAGAGACACCCGACGCGTGATTTTGTTTGACGGC
GAATGCGGTTTCTGCTCGGATGTTGTTAATATTTTCATCAATTTTGATGG
GGATCCTCGCGGGGCTTTTCGCTTCGCGTCCCTGCAAGGCGAGATAGGAC
AAGAATTGTTGAAGGCCAACGGGATGGACACAAAGCATTTTAATACGATT
GTATTGGTGGATAAGGAGCAGGTCTTTACCTCCTCCGACGCCGTTCTTCA
AATCGCCTCGCGGCTTAAGCAGCCCCTCCCTCAACTAGCCAAGCTGGCCA
AGGCCATCATTCCCCACGACATTCTAGACGCCCTCTACCACTTTGTTTCA
TCGAATCGGCATTTGTTGGCAGGCGAGAAAGATTCCTGTCGCATCCCAAG
CGAGAGTGAAATGGAGCGGTTCTTGGACCAATAGATGAAGTTCCTAATGG
CAGCCTTGCTTGGCGTGACCAGTACACAGGCGTTCTTGGGTATCCGTCCC
TCTCCCGTCGTTTGTCCTCCCTCATCCCTGTCGAAACGTGGTGCCACTAC
CCTGCACGACTCGGACGCCTTTCTCCCCCGTTCTCCCCCCTTCCGCGCAC
CACAAAGCACGCAACATGCCGGTGAAGACTTGGACACGTTGCAAGGCCGG
TTATTTGCCAGAGACACCCGACGCGTGATTTTGTTTGACGGCGAATGCGG
TTTCTGCTCGGATGTTGTTAATATTTTCATCAATTTTGATGGGGATCCTC
GCGGGGCTTTTCGCTTCGCGTCCCTGCAAGGCGAGATAGGACAAGAATTG
TTGAAGGCCAACGGGATGGACACAAAGCATTTTAATACGATTGTATTGGT
GGATAAGGAGCAGGTCTTTACCTCCTCCGACGCCGTTCTTCAAATCGCCT
CGCGGCTTAAGCAGCCCCTCCCTCAACTAGCCAAGCTGGCCAAGGCCATC
ATTCCCCACGACATTCTAGACGCCCTCTACCACTTTGTTTCATCGAATCG
GCATTTGTTGGCAGGCGAGAAAGATTCCTGTCGCATCCCAAGCGAGAGTG
AAATGGAGCGGTTCTTGGACCAATAG

Synonyms

Publications