jgi.p|Nanoce1779_2|587874, mRNA_4779 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587874
Unique NamemRNA_4779
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1410
Alignment locationscaffold_9:610948..612602 +

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Properties
Property NameValue
TranscriptId587960
TrackFilteredModels2
ProteinId587874
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:610948..612602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587874gene_4779Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587874mRNA_4779-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4779CDS_4779Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4779 ID=mRNA_4779|Name=jgi.p|Nanoce1779_2|587874|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp
TCGGCTGGTGGGGATATCAAAGAGCTCCTGGGCAGGCTGCTCTCGGAGAA
GTCCGGAGCGATCACCAAAGGTAAGTGGGAAGGGATGAGATAAGGAGTGC
TTGCACTCGAGAAATAACCCAACAAACCAAAAATTGGATGTTGGACAATG
CTTTTTTTCTCATTTCCTGATGGAAATACTTTTTGATAACTTTCCCTCCC
ATCGATGTCTATCTCCCCAACCCTTCCGTGCTCCTTCCTTCCTCTCCCCC
CACTTCTCCACCTAAGGCTCCAATCCACTCGAGTACATCACCATTGAATA
TCAACTCGATTCCCTCCTGCATAAGCTCTCCACGCTCAAACCTGTCCTGG
CCATCTGCGACGGCATCGTCATGGGCGGCGGGGCAGGTATATTCCAAGCG
GCCAGCCTGCGAGTGGTCACTCCTGCCTCAACATTTGGCATGCCCGAGTG
CCGCATTGCCATCCTGCCCGATGCTGGTGCCATGAGCTTTCTGTTCCGAG
CCCCAGGGGAGGTGCCGTTGTATTGCGCGTTGACGGGAGCCAGGTTGGGG
GGGGAGTGTATGAAGGCGGTGGCGTTGGCGACGCACGTGGTGGAGGGCAA
AGATCTACCAGAATTGTTGAATATAGTGCGGACACAGGCGTTTTCGAAGA
AGAGGGAGTGGGAGCAAGTGTTGGATGGGTTTGAGGAGGGGAGGGGGAGG
AGTGGTGTCACACCGATTGAGGCCATCCGGTCACAAATCGACGCCCTTTT
CAAGTACAACACGGTGCGCGAGATCTACACCGCTCTGCTGCAAGAAAAAC
AGAGGCAAAAGGAAAGTAATGCAGCATCGTCCTCCGTGGCCGAAGCAGGA
GGAAATGGTGGCCAAATACAGGAAAAAGACAGCGGGAAATGGATCGACAC
AGCCTTGGCGGCGTTTGACTCTGAATGCCCCGTGTCGCATGTCGTGTCTT
TACATGCCATCCGCACCGCTCAACGCCGTGGCCTGCATGCGTGGGACATT
GATCAAGGTTTGGGCATCGAGCATGTCGCCAATCGTTGCCTGGGGTTTCG
GCCAGATTTCATCGAGGGTGTGAGTACCGTCGTTGGGGCGAAAAAGGGGG
AGACGCCGGTGTGGACCCATGCGAGTTGGGAGGCCGCCGCTGAAGACCCA
GAGATTGTCCAGTTGCTGGACCGCATGACCAACGCAAAGAGTGTGTGGGA
GGAAATCATAATGGAATGAAAAATGAAGAAATAGAGAAAATGGCTTCAAA
AAGAGTACAAAAATGAAGGGACGTCGCTTGTTGACACGTTGGAGAGGCTG
GGCCATGGGGCATGCATGGCAGTTGCATTCTCACTAATATGGGCCGCCTT
ACCCTTCGCGCAACTTGAAACTTAACTTGAATGCACCCGCAATTTTCTCG
CTCCAGCGTG
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protein sequence of jgi.p|Nanoce1779_2|587874

>mRNA_4779-protein ID=mRNA_4779-protein|Name=jgi.p|Nanoce1779_2|587874|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MGGGAGIFQAASLRVVTPASTFGMPECRIAILPDAGAMSFLFRAPGEVPL
YCALTGARLGGECMKAVALATHVVEGKDLPELLNIVRTQAFSKKREWEQV
LDGFEEGRGRSGVTPIEAIRSQIDALFKYNTVREIYTALLQEKQRQKESN
AASSSVAEAGGNGGQIQEKDSGKWIDTALAAFDSECPVSHVVSLHAIRTA
QRRGLHAWDIDQGLGIEHVANRCLGFRPDFIEGVSTVVGAKKGETPVWTH
ASWEAAAEDPEIVQLLDRMTNAKSVWEEIIME*
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mRNA from alignment at scaffold_9:610948..612602+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4779 ID=mRNA_4779|Name=jgi.p|Nanoce1779_2|587874|organism=Nannochloropsis oceanica|type=mRNA|length=1655bp|location=Sequence derived from alignment at scaffold_9:610948..612602+ (Nannochloropsis oceanica)
TCGGCTGGTGGGGATATCAAAGAGCTCCTGGGCAGGCTGCTCTCGGAGAA
GTCCGGAGCGATCACCAAAGGTAAGTGGGAAGGGATGAGATAAGGAGTGC
TTGCACTCGAGAAATAACCCAACAAACCAAAAATTGGATGTTGGACAATG
CTTTTTTTCTCATTTCCTGATGGAAATACTTTTTGATAACTTTCCCTCCC
ATCGATGTCTATCTCCCCAACCCTTCCGTGCTCCTTCCTTCCTCTCCCCC
CACTTCTCCACCTAAGGCTCCAATCCACTCGAGTACATCACCATTGAATA
TCAACTCGATTCCCTCCTGCATAAGCTCTCCACGCTCAAACCTGTCCTGG
CCATCTGCGACGGCATCGTCATGGGCGGCGGGGCAGGTATATTCCAAGCG
GCCAGCCTGCGAGTGGTCACTCCTGCCTCAACATTTGGCATGCCCGAGTG
CCGCATTGCCATCCTGCCCGATGCTGGTGCCATGAGCTTTCTGTTCCGAG
CCCCAGGGGAGGTGCCGTTGTATTGCGCGTTGACGGGAGCCAGGTTGGGG
GGGGAGTGTATGAAGGCGGTGGCGTTGGCGACGCACGTGGTGGAGGGCAA
AGATCTACCAGAATTGTTGAATATAGTGCGGACACAGGCGTTTTCGAAGA
AGAGGGAGTGGGAGCAAGTGTTGGATGGGTTTGAGGAGGGGAGGGGGAGG
AGTGGTGTCACACCGGTAGGTGGGCATTGTGTGGAGGGTGAACTGTTGAC
GGTAGTGAAGCGGGCAGAGGGTTTGGGGAGTGGTACCTAAATTTTGATGA
GGAGAAGACGGGTGGGGGAATGTCGGTGGATGGGACGAGGCCTGTAAATG
GAGGGTCAGGATTGGGGAGCGATGCGCTGAAACTCGTTTTGCTTGACGAG
CCTTAGGGACTACTGGAAATGATTTTATCGATGACTCCATTCACACATCA
CATGTCACAGATTGAGGCCATCCGGTCACAAATCGACGCCCTTTTCAAGT
ACAACACGGTGCGCGAGATCTACACCGCTCTGCTGCAAGAAAAACAGAGG
CAAAAGGAAAGTAATGCAGCATCGTCCTCCGTGGCCGAAGCAGGAGGAAA
TGGTGGCCAAATACAGGAAAAAGACAGCGGGAAATGGATCGACACAGCCT
TGGCGGCGTTTGACTCTGAATGCCCCGTGTCGCATGTCGTGTCTTTACAT
GCCATCCGCACCGCTCAACGCCGTGGCCTGCATGCGTGGGACATTGATCA
AGGTTTGGGCATCGAGCATGTCGCCAATCGTTGCCTGGGGTTTCGGCCAG
ATTTCATCGAGGGTGTGAGTACCGTCGTTGGGGCGAAAAAGGGGGAGACG
CCGGTGTGGACCCATGCGAGTTGGGAGGCCGCCGCTGAAGACCCAGAGAT
TGTCCAGTTGCTGGACCGCATGACCAACGCAAAGAGTGTGTGGGAGGAAA
TCATAATGGAATGAAAAATGAAGAAATAGAGAAAATGGCTTCAAAAAGAG
TACAAAAATGAAGGGACGTCGCTTGTTGACACGTTGGAGAGGCTGGGCCA
TGGGGCATGCATGGCAGTTGCATTCTCACTAATATGGGCCGCCTTACCCT
TCGCGCAACTTGAAACTTAACTTGAATGCACCCGCAATTTTCTCGCTCCA
GCGTG
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Coding sequence (CDS) from alignment at scaffold_9:610948..612602+

>mRNA_4779 ID=mRNA_4779|Name=jgi.p|Nanoce1779_2|587874|organism=Nannochloropsis oceanica|type=CDS|length=1698bp|location=Sequence derived from alignment at scaffold_9:610948..612602+ (Nannochloropsis oceanica)
ATGGGCGGCGGGGCAGGTATATTCCAAGCGGCCAGCCTGCGAGTGGTCAC
TCCTGCCTCAACATTTGGCATGCCCGAGTGCCGCATTGCCATCCTGCCCG
ATGCTGGTGCCATGAGCTTTCTGTTCCGAGCCCCAGGGGAGGTGCCGTTG
TATTGCGCGTTGACGGGAGCCAGGTTGGGGGGGGAGTGTATGAAGGCGGT
GGCGTTGGCGACGCACGTGGTGGAGGGCAAAGATCTACCAGAATTGTTGA
ATATAGTGCGGACACAGGCGTTTTCGAAGAAGAGGGAGTGGGAGCAAGTG
TTGGATGGGTTTGAGGAGGGGAGGGGGAGGAGTGGTGTCACACCGATTGA
GGCCATCCGGTCACAAATCGACGCCCTTTTCAAGTACAACACGGTGCGCG
AGATCTACACCGCTCTGCTGCAAGAAAAACAGAGGCAAAAGGAAAGTAAT
GCAGCATCGTCCTCCGTGGCCGAAGCAGGAGGAAATGGTGGCCAAATACA
GGAAAAAGACAGCGGGAAATGGATCGACACAGCCTTGGCGGCGTTTGACT
CTGAATGCCCCGTGTCGCATGTCGTGTCTTTACATGCCATCCGCACCGCT
CAACGCCGTGGCCTGCATGCGTGGGACATTGATCAAGGTTTGGGCATCGA
GCATGTCGCCAATCGTTGCCTGGGGTTTCGGCCAGATTTCATCGAGGGTG
TGAGTACCGTCGTTGGGGCGAAAAAGGGGGAGACGCCGGTGTGGACCCAT
GCGAGTTGGGAGGCCGCCGCTGAAGACCCAGAGATTGTCCAGTTGCTGGA
CCGCATGACCAACGCAAAGAGTGTGTGGGAGGAAATCATAATGGAATGAA
TGGGCGGCGGGGCAGGTATATTCCAAGCGGCCAGCCTGCGAGTGGTCACT
CCTGCCTCAACATTTGGCATGCCCGAGTGCCGCATTGCCATCCTGCCCGA
TGCTGGTGCCATGAGCTTTCTGTTCCGAGCCCCAGGGGAGGTGCCGTTGT
ATTGCGCGTTGACGGGAGCCAGGTTGGGGGGGGAGTGTATGAAGGCGGTG
GCGTTGGCGACGCACGTGGTGGAGGGCAAAGATCTACCAGAATTGTTGAA
TATAGTGCGGACACAGGCGTTTTCGAAGAAGAGGGAGTGGGAGCAAGTGT
TGGATGGGTTTGAGGAGGGGAGGGGGAGGAGTGGTGTCACACCGATTGAG
GCCATCCGGTCACAAATCGACGCCCTTTTCAAGTACAACACGGTGCGCGA
GATCTACACCGCTCTGCTGCAAGAAAAACAGAGGCAAAAGGAAAGTAATG
CAGCATCGTCCTCCGTGGCCGAAGCAGGAGGAAATGGTGGCCAAATACAG
GAAAAAGACAGCGGGAAATGGATCGACACAGCCTTGGCGGCGTTTGACTC
TGAATGCCCCGTGTCGCATGTCGTGTCTTTACATGCCATCCGCACCGCTC
AACGCCGTGGCCTGCATGCGTGGGACATTGATCAAGGTTTGGGCATCGAG
CATGTCGCCAATCGTTGCCTGGGGTTTCGGCCAGATTTCATCGAGGGTGT
GAGTACCGTCGTTGGGGCGAAAAAGGGGGAGACGCCGGTGTGGACCCATG
CGAGTTGGGAGGCCGCCGCTGAAGACCCAGAGATTGTCCAGTTGCTGGAC
CGCATGACCAACGCAAAGAGTGTGTGGGAGGAAATCATAATGGAATGA
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Synonyms
Publications