jgi.p|Nanoce1779_2|443029, mRNA_4778 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|443029
Unique NamemRNA_4778
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length962
Alignment locationscaffold_9:610400..611361 +

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Properties
Property NameValue
TranscriptId443115
TrackFilteredModels2
ProteinId443029
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:610400..611361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|443029gene_4778Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|443029mRNA_4778-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4778CDS_4778Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4778 ID=mRNA_4778|Name=jgi.p|Nanoce1779_2|443029|organism=Nannochloropsis oceanica|type=mRNA|length=962bp
AGTGTGCGGGCGAGAGGCAGGGGGGACGCGTAATGAGTACAGGCGTTGGA
AAACGGGATGAACGATGACGGGAGCTTCTATGGACTCTGACGTGAAGTAG
TCTACACACCCCATCCCACAGGATTCCGGTGTGGATGCCGCGACAATCGT
GGAGGAACTCTACCGCCGCTTGTGCTCTTCCTGCAGTCTATCTGAGTCTA
TTCATCGTCCAAGCCTTCGTCTGCCCTCCTGCATTGCCGCCTCCCCCAGG
TCTCCTTGTACGTCCCACAACACGACTTCTCCCACTCACCAATACCACCC
CGATGGCATCCTCCACGCACAACCAAGCGGACCAGCAGCAGCACCAGCAT
GTTCTAGCCACGCTCTATCCCAACCGGGTCCTGGAACTGCAGCTAAACCG
GCCCAAAGCGCTGAACGCGCTCTCCACTCAAATGCTTGTTGATTTAACCA
AGCACGTCCAGCAGGCTTTGGAAAATGGAAAGGACGTCGAGGGCAACGAC
CTGATCGCAGCCGTGCTTCTGACCGCCGTGGAGGGCTCCCGTGCCTTTTC
GGCTGGTGGGGATATCAAAGAGCTCCTGGGCAGGCTGCTCTCGGAGAAGT
CCGGAGCGATCACCAAAGGTAAGTGGGAAGGGATGAGATAAGGAGTGCTT
GCACTCGAGAAATAACCCAACAAACCAAAAATTGGATGTTGGACAATGCT
TTTTTTCTCATTTCCTGATGGAAATACTTTTTGATAACTTTCCCTCCCAT
CGATGTCTATCTCCCCAACCCTTCCGTGCTCCTTCCTTCCTCTCCCCCCA
CTTCTCCACCTAAGGCTCCAATCCACTCGAGTACATCACCATTGAATATC
AACTCGATTCCCTCCTGCATAAGCTCTCCACGCTCAAACCTGTCCTGGCC
ATCTGCGACGGCATCGTCATGGGCGGCGGGGCAGGTATATTCCAAGCGGC
CAGCCTGCGAGT
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protein sequence of jgi.p|Nanoce1779_2|443029

>mRNA_4778-protein ID=mRNA_4778-protein|Name=jgi.p|Nanoce1779_2|443029|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MPRQSWRNSTAACALPAVYLSLFIVQAFVCPPALPPPPGLLVRPTTRLLP
LTNTTPMASSTHNQADQQQHQHVLATLYPNRVLELQLNRPKALNALSTQM
LVDLTKHVQQALENGKDVEGNDLIAAVLLTAVEGSRAFSAGGDIKELLGR
LLSEKSGAITKGKWEGMR*
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mRNA from alignment at scaffold_9:610400..611361+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4778 ID=mRNA_4778|Name=jgi.p|Nanoce1779_2|443029|organism=Nannochloropsis oceanica|type=mRNA|length=962bp|location=Sequence derived from alignment at scaffold_9:610400..611361+ (Nannochloropsis oceanica)
AGTGTGCGGGCGAGAGGCAGGGGGGACGCGTAATGAGTACAGGCGTTGGA
AAACGGGATGAACGATGACGGGAGCTTCTATGGACTCTGACGTGAAGTAG
TCTACACACCCCATCCCACAGGATTCCGGTGTGGATGCCGCGACAATCGT
GGAGGAACTCTACCGCCGCTTGTGCTCTTCCTGCAGTCTATCTGAGTCTA
TTCATCGTCCAAGCCTTCGTCTGCCCTCCTGCATTGCCGCCTCCCCCAGG
TCTCCTTGTACGTCCCACAACACGACTTCTCCCACTCACCAATACCACCC
CGATGGCATCCTCCACGCACAACCAAGCGGACCAGCAGCAGCACCAGCAT
GTTCTAGCCACGCTCTATCCCAACCGGGTCCTGGAACTGCAGCTAAACCG
GCCCAAAGCGCTGAACGCGCTCTCCACTCAAATGCTTGTTGATTTAACCA
AGCACGTCCAGCAGGCTTTGGAAAATGGAAAGGACGTCGAGGGCAACGAC
CTGATCGCAGCCGTGCTTCTGACCGCCGTGGAGGGCTCCCGTGCCTTTTC
GGCTGGTGGGGATATCAAAGAGCTCCTGGGCAGGCTGCTCTCGGAGAAGT
CCGGAGCGATCACCAAAGGTAAGTGGGAAGGGATGAGATAAGGAGTGCTT
GCACTCGAGAAATAACCCAACAAACCAAAAATTGGATGTTGGACAATGCT
TTTTTTCTCATTTCCTGATGGAAATACTTTTTGATAACTTTCCCTCCCAT
CGATGTCTATCTCCCCAACCCTTCCGTGCTCCTTCCTTCCTCTCCCCCCA
CTTCTCCACCTAAGGCTCCAATCCACTCGAGTACATCACCATTGAATATC
AACTCGATTCCCTCCTGCATAAGCTCTCCACGCTCAAACCTGTCCTGGCC
ATCTGCGACGGCATCGTCATGGGCGGCGGGGCAGGTATATTCCAAGCGGC
CAGCCTGCGAGT
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Coding sequence (CDS) from alignment at scaffold_9:610400..611361+

>mRNA_4778 ID=mRNA_4778|Name=jgi.p|Nanoce1779_2|443029|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_9:610400..611361+ (Nannochloropsis oceanica)
ATGCCGCGACAATCGTGGAGGAACTCTACCGCCGCTTGTGCTCTTCCTGC
AGTCTATCTGAGTCTATTCATCGTCCAAGCCTTCGTCTGCCCTCCTGCAT
TGCCGCCTCCCCCAGGTCTCCTTGTACGTCCCACAACACGACTTCTCCCA
CTCACCAATACCACCCCGATGGCATCCTCCACGCACAACCAAGCGGACCA
GCAGCAGCACCAGCATGTTCTAGCCACGCTCTATCCCAACCGGGTCCTGG
AACTGCAGCTAAACCGGCCCAAAGCGCTGAACGCGCTCTCCACTCAAATG
CTTGTTGATTTAACCAAGCACGTCCAGCAGGCTTTGGAAAATGGAAAGGA
CGTCGAGGGCAACGACCTGATCGCAGCCGTGCTTCTGACCGCCGTGGAGG
GCTCCCGTGCCTTTTCGGCTGGTGGGGATATCAAAGAGCTCCTGGGCAGG
CTGCTCTCGGAGAAGTCCGGAGCGATCACCAAAGGTAAGTGGGAAGGGAT
GAGATAA
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Synonyms
Publications