jgi.p|Nanoce1779_2|587867, mRNA_4777 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587867
Unique NamemRNA_4777
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length614
Alignment locationscaffold_9:609774..610387 +

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Properties
Property NameValue
TranscriptId587953
TrackFilteredModels2
ProteinId587867
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:609774..610387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587867gene_4777Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587867mRNA_4777-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4777CDS_4777Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4777 ID=mRNA_4777|Name=jgi.p|Nanoce1779_2|587867|organism=Nannochloropsis oceanica|type=mRNA|length=614bp
CCCTTCCCCTCCCACGTTCGCATCGACGAGCTGCAATGGTGCCACTAAGC
CAGTGATACCATCTTTTCCCAAAGGCGTGTCCTTCTTCCACCCCATTTTA
AGAAGGAGCCTCATGCCGCGGTTGTCGTCAGCCAAGGGCGTATCGACAGA
GGCTTGACTGAAGGAGCCATGGTCTAAATAGCCCGTGGTTTGGTAGCGTT
TGAAACTGATTTTGGTGCTGCTGCTACTTATGGCCATGGAGGAAGCACGA
GTCTCAAAGATGTCGTCGTACGACATTGTGTCGTCTCGATTGTCTGCCTC
AGTGGAGTGAGGAGGTAGAGGTGCTACTGGTGAAATGCTGCTGGTGCTCA
TGCTACCGCTGCTTGGCACTGCTACGGCACCGTCCGACTTTGGCTTGCGC
TCCATGCTGCCATTGTCTCGCAATGCAACGTCATCAGGTGGTTGTGGTAG
CAATGGCATCCTAGTGCTGCTACTAGGGCTGGAGTTGGCCATGACGAGGA
CGTTAGGGAGATGTGGTAGAGCTGGGAAATTAAGACGCCACACCCGCGGG
GCCTCGGTCAATGCGGCTGACTGCTGCGTCGAGCTTATCTTACCGTGCAA
AGCTACCTGTATCT
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protein sequence of jgi.p|Nanoce1779_2|587867

>mRNA_4777-protein ID=mRNA_4777-protein|Name=jgi.p|Nanoce1779_2|587867|organism=Nannochloropsis oceanica|type=polypeptide|length=93bp
MLLVLMLPLLGTATAPSDFGLRSMLPLSRNATSSGGCGSNGILVLLLGLE
LAMTRTLGRCGRAGKLRRHTRGASVNAADCCVELILPCKATCI
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mRNA from alignment at scaffold_9:609774..610387+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4777 ID=mRNA_4777|Name=jgi.p|Nanoce1779_2|587867|organism=Nannochloropsis oceanica|type=mRNA|length=614bp|location=Sequence derived from alignment at scaffold_9:609774..610387+ (Nannochloropsis oceanica)
CCCTTCCCCTCCCACGTTCGCATCGACGAGCTGCAATGGTGCCACTAAGC
CAGTGATACCATCTTTTCCCAAAGGCGTGTCCTTCTTCCACCCCATTTTA
AGAAGGAGCCTCATGCCGCGGTTGTCGTCAGCCAAGGGCGTATCGACAGA
GGCTTGACTGAAGGAGCCATGGTCTAAATAGCCCGTGGTTTGGTAGCGTT
TGAAACTGATTTTGGTGCTGCTGCTACTTATGGCCATGGAGGAAGCACGA
GTCTCAAAGATGTCGTCGTACGACATTGTGTCGTCTCGATTGTCTGCCTC
AGTGGAGTGAGGAGGTAGAGGTGCTACTGGTGAAATGCTGCTGGTGCTCA
TGCTACCGCTGCTTGGCACTGCTACGGCACCGTCCGACTTTGGCTTGCGC
TCCATGCTGCCATTGTCTCGCAATGCAACGTCATCAGGTGGTTGTGGTAG
CAATGGCATCCTAGTGCTGCTACTAGGGCTGGAGTTGGCCATGACGAGGA
CGTTAGGGAGATGTGGTAGAGCTGGGAAATTAAGACGCCACACCCGCGGG
GCCTCGGTCAATGCGGCTGACTGCTGCGTCGAGCTTATCTTACCGTGCAA
AGCTACCTGTATCT
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Coding sequence (CDS) from alignment at scaffold_9:609774..610387+

>mRNA_4777 ID=mRNA_4777|Name=jgi.p|Nanoce1779_2|587867|organism=Nannochloropsis oceanica|type=CDS|length=280bp|location=Sequence derived from alignment at scaffold_9:609774..610387+ (Nannochloropsis oceanica)
ATGCTGCTGGTGCTCATGCTACCGCTGCTTGGCACTGCTACGGCACCGTC
CGACTTTGGCTTGCGCTCCATGCTGCCATTGTCTCGCAATGCAACGTCAT
CAGGTGGTTGTGGTAGCAATGGCATCCTAGTGCTGCTACTAGGGCTGGAG
TTGGCCATGACGAGGACGTTAGGGAGATGTGGTAGAGCTGGGAAATTAAG
ACGCCACACCCGCGGGGCCTCGGTCAATGCGGCTGACTGCTGCGTCGAGC
TTATCTTACCGTGCAAAGCTACCTGTATCT
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Synonyms
Publications