jgi.p|Nanoce1779_2|527417, mRNA_4776 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527417
Unique NamemRNA_4776
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length651
Alignment locationscaffold_9:609360..610010 -

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Properties
Property NameValue
TranscriptId527503
TrackFilteredModels2
ProteinId527417
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:609360..610010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527417gene_4776Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4776CDS_4776Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527417mRNA_4776-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4776 ID=mRNA_4776|Name=jgi.p|Nanoce1779_2|527417|organism=Nannochloropsis oceanica|type=mRNA|length=651bp
ATGGCCATAAGTAGCAGCAGCACCAAAATCAGTTTCAAACGCTACCAAAC
CACGGGCTATTTAGACCATGGCTCCTTCAGTCAAGCCTCTGTCGATACGC
CCTTGGCTGACGACAACCGCGGCATGAGGCTCCTTCTTAAAATGGGGTGG
AAGAAGGACACGCCTTTGGGAAAAGATGGTATCACTGGCTTAGTGGCACC
ATTGCAGCTCGTCGATGCGAACGTGGGAGGGGAAGGGTTGGGGAAGGGGC
GAGAGTATGACCTGACAGCAGAGGAAGCAACGAAAAGCCGTCGACTGCTA
GACGTCGAAGTAGTAGAGACAGTGGAGATAAAAGAAGAGCGAGCCATTAA
AGCGGCCAGGGAGGAGACGCTCAAGCAGGAATTGAAAGCGGTTGTCAAGG
AATTTTACTGCGACATATGTAACAAGCAATATACGGGCGTCTCCGAATTT
GCGGTCCACCTCGACGGTTACGAGCACGGGCATACGAAACGCTTGAAGGA
AACAAAAGAGGCAAACAGAGCGCGAGCAGCGGGCAAGGCGGGGAGTAAAG
CAAAGCAGGATCAATTGCGGCAGGAAAAGGAGATGCAAAGACGCATCGCT
GCAGCTGCGGGAAAGCCCGGCGGTGCTGCTCCTGCGGTTGCAGCTCCTCC
T
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protein sequence of jgi.p|Nanoce1779_2|527417

>mRNA_4776-protein ID=mRNA_4776-protein|Name=jgi.p|Nanoce1779_2|527417|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MAISSSSTKISFKRYQTTGYLDHGSFSQASVDTPLADDNRGMRLLLKMGW
KKDTPLGKDGITGLVAPLQLVDANVGGEGLGKGREYDLTAEEATKSRRLL
DVEVVETVEIKEERAIKAAREETLKQELKAVVKEFYCDICNKQYTGVSEF
AVHLDGYEHGHTKRLKETKEANRARAAGKAGSKAKQDQLRQEKEMQRRIA
AAAGKPGGAAPAVAAPP
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mRNA from alignment at scaffold_9:609360..610010-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4776 ID=mRNA_4776|Name=jgi.p|Nanoce1779_2|527417|organism=Nannochloropsis oceanica|type=mRNA|length=651bp|location=Sequence derived from alignment at scaffold_9:609360..610010- (Nannochloropsis oceanica)
ATGGCCATAAGTAGCAGCAGCACCAAAATCAGTTTCAAACGCTACCAAAC
CACGGGCTATTTAGACCATGGCTCCTTCAGTCAAGCCTCTGTCGATACGC
CCTTGGCTGACGACAACCGCGGCATGAGGCTCCTTCTTAAAATGGGGTGG
AAGAAGGACACGCCTTTGGGAAAAGATGGTATCACTGGCTTAGTGGCACC
ATTGCAGCTCGTCGATGCGAACGTGGGAGGGGAAGGGTTGGGGAAGGGGC
GAGAGTATGACCTGACAGCAGAGGAAGCAACGAAAAGCCGTCGACTGCTA
GACGTCGAAGTAGTAGAGACAGTGGAGATAAAAGAAGAGCGAGCCATTAA
AGCGGCCAGGGAGGAGACGCTCAAGCAGGAATTGAAAGCGGTTGTCAAGG
AATTTTACTGCGACATATGTAACAAGCAATATACGGGCGTCTCCGAATTT
GCGGTCCACCTCGACGGTTACGAGCACGGGCATACGAAACGCTTGAAGGA
AACAAAAGAGGCAAACAGAGCGCGAGCAGCGGGCAAGGCGGGGAGTAAAG
CAAAGCAGGATCAATTGCGGCAGGAAAAGGAGATGCAAAGACGCATCGCT
GCAGCTGCGGGAAAGCCCGGCGGTGCTGCTCCTGCGGTTGCAGCTCCTCC
T
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Coding sequence (CDS) from alignment at scaffold_9:609360..610010-

>mRNA_4776 ID=mRNA_4776|Name=jgi.p|Nanoce1779_2|527417|organism=Nannochloropsis oceanica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_9:609360..610010- (Nannochloropsis oceanica)
ATGGCCATAAGTAGCAGCAGCACCAAAATCAGTTTCAAACGCTACCAAAC
CACGGGCTATTTAGACCATGGCTCCTTCAGTCAAGCCTCTGTCGATACGC
CCTTGGCTGACGACAACCGCGGCATGAGGCTCCTTCTTAAAATGGGGTGG
AAGAAGGACACGCCTTTGGGAAAAGATGGTATCACTGGCTTAGTGGCACC
ATTGCAGCTCGTCGATGCGAACGTGGGAGGGGAAGGGTTGGGGAAGGGGC
GAGAGTATGACCTGACAGCAGAGGAAGCAACGAAAAGCCGTCGACTGCTA
GACGTCGAAGTAGTAGAGACAGTGGAGATAAAAGAAGAGCGAGCCATTAA
AGCGGCCAGGGAGGAGACGCTCAAGCAGGAATTGAAAGCGGTTGTCAAGG
AATTTTACTGCGACATATGTAACAAGCAATATACGGGCGTCTCCGAATTT
GCGGTCCACCTCGACGGTTACGAGCACGGGCATACGAAACGCTTGAAGGA
AACAAAAGAGGCAAACAGAGCGCGAGCAGCGGGCAAGGCGGGGAGTAAAG
CAAAGCAGGATCAATTGCGGCAGGAAAAGGAGATGCAAAGACGCATCGCT
GCAGCTGCGGGAAAGCCCGGCGGTGCTGCTCCTGCGGTTGCAGCTCCTCC
T
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Synonyms
Publications