jgi.p|Nanoce1779_2|587861, mRNA_4774 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587861
Unique NamemRNA_4774
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length595
Alignment locationscaffold_9:607551..608594 +

Link to JBrowse

Properties
Property NameValue
TranscriptId587947
TrackFilteredModels2
ProteinId587861
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:607551..608594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587861gene_4774Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587861mRNA_4774-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4774CDS_4774Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4774 ID=mRNA_4774|Name=jgi.p|Nanoce1779_2|587861|organism=Nannochloropsis oceanica|type=mRNA|length=595bp
ACAGACAAAGCAAAATTATGGCCTCAGAGCTCTACAAAGCCCTCGAAGGG
CACGAGATGGTGATCGCTGCTGTATTGGCCTTACTAGCGACGGTCTTCAT
GATTTTCAAGGACAAGAAAGTGACCATGCACGTCAACCCTTCTATAAAGA
AGGATCAGCCCAAGGTAGTAGATGCATTTACCGTGAAGGACATTGAAGAC
ATGATGAAGAAAGATAAGAACGGGGTGGTAGCCATGTGCCGGTGCTGGCG
CAGCAAGACCTTCCCCTTGTGTGATGGCTCACACACCGAACACAACAAGA
GATGTGGCGATAACGTTGGGCCCGTGGTGCTCAAAAAGTAGGGGAAGAGG
GTGTAACTGCCTGAATGAACGAACAGAAAAAAGACGGTGGAGATGGGTAA
AGGGAATCCCCCCCCAAAAAAGTGGCAAAAAGAGCAGATGAAGAACGGAG
AGAAAGTCCGCGGTGGGTGGAAAACGAATGCATGATAAAGTCTGATGAGT
CTCGATCAAGAAAGCTACAAGGCCAAGAACGAAAAGAAAAAAAGAAAGAA
AGAGAAAGAATGAAGAAGAAGAATCATCAACCAAAGACAAGCAAA
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protein sequence of jgi.p|Nanoce1779_2|587861

>mRNA_4774-protein ID=mRNA_4774-protein|Name=jgi.p|Nanoce1779_2|587861|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MASELYKALEGHEMVIAAVLALLATVFMIFKDKKVTMHVNPSIKKDQPKV
VDAFTVKDIEDMMKKDKNGVVAMCRCWRSKTFPLCDGSHTEHNKRCGDNV
GPVVLKK*
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mRNA from alignment at scaffold_9:607551..608594+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4774 ID=mRNA_4774|Name=jgi.p|Nanoce1779_2|587861|organism=Nannochloropsis oceanica|type=mRNA|length=1044bp|location=Sequence derived from alignment at scaffold_9:607551..608594+ (Nannochloropsis oceanica)
ACAGACAAAGCAAAATTATGGCCTCAGAGCTCTACAAAGCCCTCGAAGGG
CACGAGATGGTGATCGCTGCTGTATTGGCCTTACTAGCGACGGTCTTCAT
GATTTTCAAGGACAAGAAAGTGACCATGCACGTCAACCCTTGTAAGATTA
AAAGGAGAGGTTTCGACTGATGTGTGCGCAGTTAAGTGCGGGGTCTCATG
CTTGTCTTTCACGTATTTCTCACCTTTACAACAGCTATAAAGAAGGATCA
GCCCAAGGTAGTAGATGCATTTACCGTGAAGGGTACGTTGCGAAAAGGAC
GGATGCGGCGGGAAGTGTGCATGGATGTGTCTTCCCTGGGTGCTTGCTTG
ATTTGTGCAGCAGAGCATGCCTTGGACTACATGTTTGAGGCTGGTGAACC
TTCGCTTCACCCATTGGTAACTTTCCCAGCCCACCTTGTAGGAGTGAATC
ACAGCCTTTGTGTCCCATTCACACTTGTCGTCCTTCAACCTTTTCAACAC
AATCAGACATTGAAGACATGATGAAGAAAGATAAGAACGGGGTGGTAGCC
ATGTGCCGGTGCTGGCGCAGCAAGACCTTCCCCTTGTGTGATGGCTCACA
CACCGAACACAACAAGAGATGTGGCGATAAGTAAGTTGTTATGGCAGGCC
GTTCCCTCCTTCCTCTCTTCCTCCTTCCTTCCCCTTCTCCATTAATCACT
ACACATCTTCATTCCCTCCCTTCAACTTCCGCCCCTCCCCCCTTCCATCC
TCCCTACCCTAGCGTTGGGCCCGTGGTGCTCAAAAAGTAGGGGAAGAGGG
TGTAACTGCCTGAATGAACGAACAGAAAAAAGACGGTGGAGATGGGTAAA
GGGAATCCCCCCCCAAAAAAGTGGCAAAAAGAGCAGATGAAGAACGGAGA
GAAAGTCCGCGGTGGGTGGAAAACGAATGCATGATAAAGTCTGATGAGTC
TCGATCAAGAAAGCTACAAGGCCAAGAACGAAAAGAAAAAAAGAAAGAAA
GAGAAAGAATGAAGAAGAAGAATCATCAACCAAAGACAAGCAAA
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Coding sequence (CDS) from alignment at scaffold_9:607551..608594+

>mRNA_4774 ID=mRNA_4774|Name=jgi.p|Nanoce1779_2|587861|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at scaffold_9:607551..608594+ (Nannochloropsis oceanica)
ATGGCCTCAGAGCTCTACAAAGCCCTCGAAGGGCACGAGATGGTGATCGC
TGCTGTATTGGCCTTACTAGCGACGGTCTTCATGATTTTCAAGGACAAGA
AAGTGACCATGCACGTCAACCCTTCTATAAAGAAGGATCAGCCCAAGGTA
GTAGATGCATTTACCGTGAAGGACATTGAAGACATGATGAAGAAAGATAA
GAACGGGGTGGTAGCCATGTGCCGGTGCTGGCGCAGCAAGACCTTCCCCT
TGTGTGATGGCTCACACACCGAACACAACAAGAGATGTGGCGATAACGTT
GGGCCCGTGGTGCTCAAAAAGTAGATGGCCTCAGAGCTCTACAAAGCCCT
CGAAGGGCACGAGATGGTGATCGCTGCTGTATTGGCCTTACTAGCGACGG
TCTTCATGATTTTCAAGGACAAGAAAGTGACCATGCACGTCAACCCTTCT
ATAAAGAAGGATCAGCCCAAGGTAGTAGATGCATTTACCGTGAAGGACAT
TGAAGACATGATGAAGAAAGATAAGAACGGGGTGGTAGCCATGTGCCGGT
GCTGGCGCAGCAAGACCTTCCCCTTGTGTGATGGCTCACACACCGAACAC
AACAAGAGATGTGGCGATAACGTTGGGCCCGTGGTGCTCAAAAAGTAGAT
GGCCTCAGAGCTCTACAAAGCCCTCGAAGGGCACGAGATGGTGATCGCTG
CTGTATTGGCCTTACTAGCGACGGTCTTCATGATTTTCAAGGACAAGAAA
GTGACCATGCACGTCAACCCTTCTATAAAGAAGGATCAGCCCAAGGTAGT
AGATGCATTTACCGTGAAGGACATTGAAGACATGATGAAGAAAGATAAGA
ACGGGGTGGTAGCCATGTGCCGGTGCTGGCGCAGCAAGACCTTCCCCTTG
TGTGATGGCTCACACACCGAACACAACAAGAGATGTGGCGATAACGTTGG
GCCCGTGGTGCTCAAAAAGTAGATGGCCTCAGAGCTCTACAAAGCCCTCG
AAGGGCACGAGATGGTGATCGCTGCTGTATTGGCCTTACTAGCGACGGTC
TTCATGATTTTCAAGGACAAGAAAGTGACCATGCACGTCAACCCTTCTAT
AAAGAAGGATCAGCCCAAGGTAGTAGATGCATTTACCGTGAAGGACATTG
AAGACATGATGAAGAAAGATAAGAACGGGGTGGTAGCCATGTGCCGGTGC
TGGCGCAGCAAGACCTTCCCCTTGTGTGATGGCTCACACACCGAACACAA
CAAGAGATGTGGCGATAACGTTGGGCCCGTGGTGCTCAAAAAGTAG
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Synonyms
Publications