|
|
Properties
| Property Name | Value |
| TranscriptId | 587940 |
| Track | FilteredModels2 |
| ProteinId | 587854 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| scaffold_9 | supercontig | scaffold_9:602194..604778 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4772 ID=mRNA_4772|Name=jgi.p|Nanoce1779_2|587854|organism=Nannochloropsis oceanica|type=mRNA|length=1697bp AGTCCCAAACATAGGGAGAAACTAGGCCAAGCAGGAGGAGGTGCCAGCGG AAGAATCGCGTCTCTTGACATAAGGGATCCTCGAGAACATCTCTCAAGGG CATTGTTGAAAAGAAAAACAAGCAAAAAACCCTCAGCGACACTCTCTCAC ACACACAAGCGGCAAGACTGAAGTAATGGGCTGCATAAATACCAAGCCTC CAGGGAGCGGAAGCGGCGACCCACTGCCTGGGACGACAAACGCGAACAAC TCCTCCAAGTTTGAAAACGACTACGCCTTGGGAAAGGATTTGGGGTCCGG AGCCTATGCCGTTGTGTACGAATGCCACCATAAAGCGACGGGCCGAAAGG CTGCGGTCAAGGTTGTGGAACGCTCGAAGCTAACGGTGGAGGACGACGAG GCCTTGAAGGAGGAAGTCGCTATTTTGCGGAGCTTGAAGCATGACCACAT CGTGGGCCTGTTCGATTTCTACCAGGACAAACAGAAGTATTACTTGGTGT TGGAGATTTGTTTGGGCGGGGAGCTCTTTGACCGGATCGTGGAGAAGAAG AGCTACAACGAGAAGGAAGCCCGGGACCTCGTGCGCATTCTGTTCGATGC GCTGCATTACTGCCACCGTGCATCCGTGGTCCACCGCGACTTGAAGCCGG AGAATTTGTTGTTGGAGGATGAAAGGGATAATGCGAATATCAAGCTGGCT GACTTTGGGTTTGCACAACGGATATGCGCGCCGAATTCACTGACTACGCA GTGCGGGACTCCAGGCTACGTCGCCCCGGAAATACTCAAAGGCATTCCAT ACGGAGAGAAAGTTGACGTCTGGAGCGCGGGCGTCATAACGTACATTCTT TTGGGTGGCTACCCCCCTTTCTACGACGAAAACCAAGGGCGAATGTTCCG GAAAATCAAGCGCGGGGAGTTCAAATTTCACTCGCCCATGTGGGACAACG TCAGTGCCGAAGCCAAAGACCTCATCAAGAAGCTGTTGGTGGTTGACCCG TCGCAGAGGCTGACGGCCGAGCAGGCATTAAAGCACGCCTGGGTATTAAC GAAAGATGACGTGCTGGTGAAGCGCGACCTGACTGGCACAGTGGAAGAGA TGAAAAAGTTCAATGCCAAGCGGAAGTTCCGTGGCGCCGTCGCGGCCGTT AAGCTCATGAATCGCCTCAAAGCCTCAGGGAGCGCGCGACTCGACGACTC TACTGATGACGGGGCCGATCTTGATGCGAGTGACAGTGCTGCGCCTGTCG TGTTCAAACCAGCGACGGGCAACATCTTGGCCACGAACGTTGCGGGAACG GCTTGAGGCGGAGGAAGGGAGGGAATGTAGGAGGGTGGGACAGGATGAGA ATGGGCTGTACATCGGCCATCAGATTGAGGAAGCATGGATGAGTATGTGT GTGTGTGTGTGAGGGAGAAAATAGTGTATGAATGTTATGTGTGTATGTTA GATCATATGGCGGAGAAGAGGTGCGGTTAGTCTGAGTGCGGATGGACGAA AGCAGGCACTATGGAGAAAATGAGGAACAACATAGCAGGCAAGTATCGAA ATAACATTTGTGAGGAGATTCAGCTTTGCAGAATGAAAAAAAAATAATGA TAAGATAGGAAAAACATAATGGTGTGGAAGTCAGAGAAAAAGAAAGCGGT CACTTGGTTTGGAAGAAGAAAGAGAAGTCAAAAACGAAAGACAAAAA back to topprotein sequence of jgi.p|Nanoce1779_2|587854 >mRNA_4772-protein ID=mRNA_4772-protein|Name=jgi.p|Nanoce1779_2|587854|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp MGCINTKPPGSGSGDPLPGTTNANNSSKFENDYALGKDLGSGAYAVVYEC HHKATGRKAAVKVVERSKLTVEDDEALKEEVAILRSLKHDHIVGLFDFYQ DKQKYYLVLEICLGGELFDRIVEKKSYNEKEARDLVRILFDALHYCHRAS VVHRDLKPENLLLEDERDNANIKLADFGFAQRICAPNSLTTQCGTPGYVA PEILKGIPYGEKVDVWSAGVITYILLGGYPPFYDENQGRMFRKIKRGEFK FHSPMWDNVSAEAKDLIKKLLVVDPSQRLTAEQALKHAWVLTKDDVLVKR DLTGTVEEMKKFNAKRKFRGAVAAVKLMNRLKASGSARLDDSTDDGADLD ASDSAAPVVFKPATGNILATNVAGTA* back to topmRNA from alignment at scaffold_9:602194..604778+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4772 ID=mRNA_4772|Name=jgi.p|Nanoce1779_2|587854|organism=Nannochloropsis oceanica|type=mRNA|length=2585bp|location=Sequence derived from alignment at scaffold_9:602194..604778+ (Nannochloropsis oceanica) AGTCCCAAACATAGGGAGAAACTAGGCCAAGCAGGAGGAGGTGCCAGCGG
AAGAATCGCGTCTCTTGACATAAGGGATCCTCGAGAACATCTCTCAAGGG
CATTGTTGAAAAGAAAAACAAGCAAAAAACCCTCAGCGACACTCTCTCAC
ACACACAAGCGGCAAGACTGAAGTAATGGGCTGCATAAATACCAAGGTAC
GTGTGTCTGTCGTCGCGTCGGTCCGGAAGGCTGACCAGGTTTTGAGTTTG
CCCCCCTTGCTTGCAGTTCTAGGTCGTCGTGATCACATTGTTCCATTTCA
ATATGCCCCGCGTGCAATAGAGACTACAGCCCTGGCATTTGGCAACGCGT
CAACACCAACGATGTGTGAGCAACGTTATGATCTTGTTTTCAATCTCTCC
GCCAGCTTTCCTTACTTTGGAACCCGCATAAAAGTAGCGCACGCAGCCTG
CCGCTTGCCAGAGGCCGACAACGCCGGCGCTGACAGAGTTACATGCTGCC
GAGGGCCTTGCTTTCTCATCGCCCCGGTCGTCCTTACACTTTTTATCTAT
CCCTCCTGTCCCCGAATTTATCTATTTTAAACGTCCCCCTTATCCCCCCG
CCTTTTCCGACGACCTCACCTACCGACAGCCTCCAGGGAGCGGAAGCGGC
GACCCACTGCCTGGGACGACAAACGCGAACAACTCCTCCAAGTTTGAAAA
CGACTACGCCTTGGGAAAGGATTTGGGGTCCGGAGCCTATGCCGTTGTGT
ACGAATGCCACCATAAAGCGACGGGCCGAAAGGCTGCGGTCAAGGTTGTG
GAACGCTCGAAGCTAACGGTGGAGGACGACGAGGCCTTGAAGGAGGAAGT
CGCTATTTTGCGGAGCTTGAAGCATGACCACATCGTGGGCCTGTTCGATT
TCTACCAGGACAAACAGAAGTATTACTTGGTGTTGGAGATTTGTTTGGGC
GGGGAGCTCTTTGACCGGATCGTGGAGAAGAAGAGCTACAACGAGAAGGA
AGCCCGGGACCTCGTGCGCATTCTGTTCGATGCGCTGCATTACTGCCACC
GTGCATCCGTGGTCCACCGCGACTTGAAGCCGGAGAATTTGTTGTTGGAG
GATGAAAGGGATAATGCGAATATCAAGCTGGCTGACTTTGGGTTTGCACA
ACGGATATGCGCGCCGAATTCACTGACTACGCAGTGCGGGACTCCAGGGT
AGGTGCCTACTCCTCCTCCTCCTCCTTTCCCCCTCCTTCTTTATCTTCTT
TATCTTCTTCGTCTCCTTGCACATCAACTGTGTCGTATCTCACCTAACCT
CCCCCTCTCTCCCTCCCTTAGCTACGTCGCCCCGGAAATACTCAAAGGCA
TTCCATACGGAGAGAAAGTTGACGTCTGGAGCGCGGGCGTCATAACGTAC
ATTCTTTTGGGTGGCTACCCCCCTTTCTACGACGAAAACCAAGGGCGAAT
GTTCCGGTACGTGCTCTTTTCCTTCCTTCCCTCCCTCCCTCCCTCCCTCT
TTCCCCCCCTCCGAGCATCTTTTTTCCAGTAAGATGTAATAAACAGTTCA
CTCGAAGCCTGACCGATCCGATTCTTCTTCTCCCTCCCTCCCTTCTATCA
TGACACACGCCAGGAAAATCAAGCGCGGGGAGTTCAAATTTCACTCGCCC
ATGTGGGACAACGTCAGTGCCGAAGCCAAAGACCTCATCAAGAAGCTGTT
GGTGGTTGACCCGTCGCAGAGGCTGACGGCCGAGCAGGCATTAAAGCACG
CCTGGGTATTAACGAAAGATGACGTGCTGGTGAAGCGCGACCTGACTGGC
ACAGTGGAAGAGATGAAAAAGTACGTCTCCCCCTTTCTCTCCTCCTCTTC
CTCCCCCGCCTCCTCCTCCTTTCTTGGTTGTATTTCCTCGCTGAGTTGCA
TGTCAACGGCGAGTACATGACATATATTTACACATATACTTTTTAACTGA
ACGTTCTTTGTTTCCTCTTCTCTCCCTTTTCTACCCCTCCTTCAGGTTCA
ATGCCAAGCGGAAGTTCCGTGGCGCCGTCGCGGCCGTTAAGCTCATGAAT
CGCCTCAAAGCCTCAGGGAGCGCGCGACTCGACGACTCTACTGATGACGG
GGCCGATCTTGATGCGAGTGACAGTGCTGCGCCTGTCGTGTTCAAACCAG
CGACGGGCAACATCTTGGCCACGAACGTTGCGGGAACGGCTTGAGGCGGA
GGAAGGGAGGGAATGTAGGAGGGTGGGACAGGATGAGAATGGGCTGTACA
TCGGCCATCAGATTGAGGAAGCATGGATGAGTATGTGTGTGTGTGTGTGA
GGGAGAAAATAGTGTATGAATGTTATGTGTGTATGTTAGATCATATGGCG
GAGAAGAGGTGCGGTTAGTCTGAGTGCGGATGGACGAAAGCAGGCACTAT
GGAGAAAATGAGGAACAACATAGCAGGCAAGTATCGAAATAACATTTGTG
AGGAGATTCAGCTTTGCAGAATGAAAAAAAAATAATGATAAGATAGGAAA
AACATAATGGTGTGGAAGTCAGAGAAAAAGAAAGCGGTCACTTGGTTTGG
AAGAAGAAAGAGAAGTCAAAAACGAAAGACAAAAA back to topCoding sequence (CDS) from alignment at scaffold_9:602194..604778+ >mRNA_4772 ID=mRNA_4772|Name=jgi.p|Nanoce1779_2|587854|organism=Nannochloropsis oceanica|type=CDS|length=5655bp|location=Sequence derived from alignment at scaffold_9:602194..604778+ (Nannochloropsis oceanica) ATGGGCTGCATAAATACCAAGCCTCCAGGGAGCGGAAGCGGCGACCCACT GCCTGGGACGACAAACGCGAACAACTCCTCCAAGTTTGAAAACGACTACG CCTTGGGAAAGGATTTGGGGTCCGGAGCCTATGCCGTTGTGTACGAATGC CACCATAAAGCGACGGGCCGAAAGGCTGCGGTCAAGGTTGTGGAACGCTC GAAGCTAACGGTGGAGGACGACGAGGCCTTGAAGGAGGAAGTCGCTATTT TGCGGAGCTTGAAGCATGACCACATCGTGGGCCTGTTCGATTTCTACCAG GACAAACAGAAGTATTACTTGGTGTTGGAGATTTGTTTGGGCGGGGAGCT CTTTGACCGGATCGTGGAGAAGAAGAGCTACAACGAGAAGGAAGCCCGGG ACCTCGTGCGCATTCTGTTCGATGCGCTGCATTACTGCCACCGTGCATCC GTGGTCCACCGCGACTTGAAGCCGGAGAATTTGTTGTTGGAGGATGAAAG GGATAATGCGAATATCAAGCTGGCTGACTTTGGGTTTGCACAACGGATAT GCGCGCCGAATTCACTGACTACGCAGTGCGGGACTCCAGGCTACGTCGCC CCGGAAATACTCAAAGGCATTCCATACGGAGAGAAAGTTGACGTCTGGAG CGCGGGCGTCATAACGTACATTCTTTTGGGTGGCTACCCCCCTTTCTACG ACGAAAACCAAGGGCGAATGTTCCGGAAAATCAAGCGCGGGGAGTTCAAA TTTCACTCGCCCATGTGGGACAACGTCAGTGCCGAAGCCAAAGACCTCAT CAAGAAGCTGTTGGTGGTTGACCCGTCGCAGAGGCTGACGGCCGAGCAGG CATTAAAGCACGCCTGGGTATTAACGAAAGATGACGTGCTGGTGAAGCGC GACCTGACTGGCACAGTGGAAGAGATGAAAAAGTTCAATGCCAAGCGGAA GTTCCGTGGCGCCGTCGCGGCCGTTAAGCTCATGAATCGCCTCAAAGCCT CAGGGAGCGCGCGACTCGACGACTCTACTGATGACGGGGCCGATCTTGAT GCGAGTGACAGTGCTGCGCCTGTCGTGTTCAAACCAGCGACGGGCAACAT CTTGGCCACGAACGTTGCGGGAACGGCTTGAATGGGCTGCATAAATACCA AGCCTCCAGGGAGCGGAAGCGGCGACCCACTGCCTGGGACGACAAACGCG AACAACTCCTCCAAGTTTGAAAACGACTACGCCTTGGGAAAGGATTTGGG GTCCGGAGCCTATGCCGTTGTGTACGAATGCCACCATAAAGCGACGGGCC GAAAGGCTGCGGTCAAGGTTGTGGAACGCTCGAAGCTAACGGTGGAGGAC GACGAGGCCTTGAAGGAGGAAGTCGCTATTTTGCGGAGCTTGAAGCATGA CCACATCGTGGGCCTGTTCGATTTCTACCAGGACAAACAGAAGTATTACT TGGTGTTGGAGATTTGTTTGGGCGGGGAGCTCTTTGACCGGATCGTGGAG AAGAAGAGCTACAACGAGAAGGAAGCCCGGGACCTCGTGCGCATTCTGTT CGATGCGCTGCATTACTGCCACCGTGCATCCGTGGTCCACCGCGACTTGA AGCCGGAGAATTTGTTGTTGGAGGATGAAAGGGATAATGCGAATATCAAG CTGGCTGACTTTGGGTTTGCACAACGGATATGCGCGCCGAATTCACTGAC TACGCAGTGCGGGACTCCAGGCTACGTCGCCCCGGAAATACTCAAAGGCA TTCCATACGGAGAGAAAGTTGACGTCTGGAGCGCGGGCGTCATAACGTAC ATTCTTTTGGGTGGCTACCCCCCTTTCTACGACGAAAACCAAGGGCGAAT GTTCCGGAAAATCAAGCGCGGGGAGTTCAAATTTCACTCGCCCATGTGGG ACAACGTCAGTGCCGAAGCCAAAGACCTCATCAAGAAGCTGTTGGTGGTT GACCCGTCGCAGAGGCTGACGGCCGAGCAGGCATTAAAGCACGCCTGGGT ATTAACGAAAGATGACGTGCTGGTGAAGCGCGACCTGACTGGCACAGTGG AAGAGATGAAAAAGTTCAATGCCAAGCGGAAGTTCCGTGGCGCCGTCGCG GCCGTTAAGCTCATGAATCGCCTCAAAGCCTCAGGGAGCGCGCGACTCGA CGACTCTACTGATGACGGGGCCGATCTTGATGCGAGTGACAGTGCTGCGC CTGTCGTGTTCAAACCAGCGACGGGCAACATCTTGGCCACGAACGTTGCG GGAACGGCTTGAATGGGCTGCATAAATACCAAGCCTCCAGGGAGCGGAAG CGGCGACCCACTGCCTGGGACGACAAACGCGAACAACTCCTCCAAGTTTG AAAACGACTACGCCTTGGGAAAGGATTTGGGGTCCGGAGCCTATGCCGTT GTGTACGAATGCCACCATAAAGCGACGGGCCGAAAGGCTGCGGTCAAGGT TGTGGAACGCTCGAAGCTAACGGTGGAGGACGACGAGGCCTTGAAGGAGG AAGTCGCTATTTTGCGGAGCTTGAAGCATGACCACATCGTGGGCCTGTTC GATTTCTACCAGGACAAACAGAAGTATTACTTGGTGTTGGAGATTTGTTT GGGCGGGGAGCTCTTTGACCGGATCGTGGAGAAGAAGAGCTACAACGAGA AGGAAGCCCGGGACCTCGTGCGCATTCTGTTCGATGCGCTGCATTACTGC CACCGTGCATCCGTGGTCCACCGCGACTTGAAGCCGGAGAATTTGTTGTT GGAGGATGAAAGGGATAATGCGAATATCAAGCTGGCTGACTTTGGGTTTG CACAACGGATATGCGCGCCGAATTCACTGACTACGCAGTGCGGGACTCCA GGCTACGTCGCCCCGGAAATACTCAAAGGCATTCCATACGGAGAGAAAGT TGACGTCTGGAGCGCGGGCGTCATAACGTACATTCTTTTGGGTGGCTACC CCCCTTTCTACGACGAAAACCAAGGGCGAATGTTCCGGAAAATCAAGCGC GGGGAGTTCAAATTTCACTCGCCCATGTGGGACAACGTCAGTGCCGAAGC CAAAGACCTCATCAAGAAGCTGTTGGTGGTTGACCCGTCGCAGAGGCTGA CGGCCGAGCAGGCATTAAAGCACGCCTGGGTATTAACGAAAGATGACGTG CTGGTGAAGCGCGACCTGACTGGCACAGTGGAAGAGATGAAAAAGTTCAA TGCCAAGCGGAAGTTCCGTGGCGCCGTCGCGGCCGTTAAGCTCATGAATC GCCTCAAAGCCTCAGGGAGCGCGCGACTCGACGACTCTACTGATGACGGG GCCGATCTTGATGCGAGTGACAGTGCTGCGCCTGTCGTGTTCAAACCAGC GACGGGCAACATCTTGGCCACGAACGTTGCGGGAACGGCTTGAATGGGCT GCATAAATACCAAGCCTCCAGGGAGCGGAAGCGGCGACCCACTGCCTGGG ACGACAAACGCGAACAACTCCTCCAAGTTTGAAAACGACTACGCCTTGGG AAAGGATTTGGGGTCCGGAGCCTATGCCGTTGTGTACGAATGCCACCATA AAGCGACGGGCCGAAAGGCTGCGGTCAAGGTTGTGGAACGCTCGAAGCTA ACGGTGGAGGACGACGAGGCCTTGAAGGAGGAAGTCGCTATTTTGCGGAG CTTGAAGCATGACCACATCGTGGGCCTGTTCGATTTCTACCAGGACAAAC AGAAGTATTACTTGGTGTTGGAGATTTGTTTGGGCGGGGAGCTCTTTGAC CGGATCGTGGAGAAGAAGAGCTACAACGAGAAGGAAGCCCGGGACCTCGT GCGCATTCTGTTCGATGCGCTGCATTACTGCCACCGTGCATCCGTGGTCC ACCGCGACTTGAAGCCGGAGAATTTGTTGTTGGAGGATGAAAGGGATAAT GCGAATATCAAGCTGGCTGACTTTGGGTTTGCACAACGGATATGCGCGCC GAATTCACTGACTACGCAGTGCGGGACTCCAGGCTACGTCGCCCCGGAAA TACTCAAAGGCATTCCATACGGAGAGAAAGTTGACGTCTGGAGCGCGGGC GTCATAACGTACATTCTTTTGGGTGGCTACCCCCCTTTCTACGACGAAAA CCAAGGGCGAATGTTCCGGAAAATCAAGCGCGGGGAGTTCAAATTTCACT CGCCCATGTGGGACAACGTCAGTGCCGAAGCCAAAGACCTCATCAAGAAG CTGTTGGTGGTTGACCCGTCGCAGAGGCTGACGGCCGAGCAGGCATTAAA GCACGCCTGGGTATTAACGAAAGATGACGTGCTGGTGAAGCGCGACCTGA CTGGCACAGTGGAAGAGATGAAAAAGTTCAATGCCAAGCGGAAGTTCCGT GGCGCCGTCGCGGCCGTTAAGCTCATGAATCGCCTCAAAGCCTCAGGGAG CGCGCGACTCGACGACTCTACTGATGACGGGGCCGATCTTGATGCGAGTG ACAGTGCTGCGCCTGTCGTGTTCAAACCAGCGACGGGCAACATCTTGGCC ACGAACGTTGCGGGAACGGCTTGAATGGGCTGCATAAATACCAAGCCTCC AGGGAGCGGAAGCGGCGACCCACTGCCTGGGACGACAAACGCGAACAACT CCTCCAAGTTTGAAAACGACTACGCCTTGGGAAAGGATTTGGGGTCCGGA GCCTATGCCGTTGTGTACGAATGCCACCATAAAGCGACGGGCCGAAAGGC TGCGGTCAAGGTTGTGGAACGCTCGAAGCTAACGGTGGAGGACGACGAGG CCTTGAAGGAGGAAGTCGCTATTTTGCGGAGCTTGAAGCATGACCACATC GTGGGCCTGTTCGATTTCTACCAGGACAAACAGAAGTATTACTTGGTGTT GGAGATTTGTTTGGGCGGGGAGCTCTTTGACCGGATCGTGGAGAAGAAGA GCTACAACGAGAAGGAAGCCCGGGACCTCGTGCGCATTCTGTTCGATGCG CTGCATTACTGCCACCGTGCATCCGTGGTCCACCGCGACTTGAAGCCGGA GAATTTGTTGTTGGAGGATGAAAGGGATAATGCGAATATCAAGCTGGCTG ACTTTGGGTTTGCACAACGGATATGCGCGCCGAATTCACTGACTACGCAG TGCGGGACTCCAGGCTACGTCGCCCCGGAAATACTCAAAGGCATTCCATA CGGAGAGAAAGTTGACGTCTGGAGCGCGGGCGTCATAACGTACATTCTTT TGGGTGGCTACCCCCCTTTCTACGACGAAAACCAAGGGCGAATGTTCCGG AAAATCAAGCGCGGGGAGTTCAAATTTCACTCGCCCATGTGGGACAACGT CAGTGCCGAAGCCAAAGACCTCATCAAGAAGCTGTTGGTGGTTGACCCGT CGCAGAGGCTGACGGCCGAGCAGGCATTAAAGCACGCCTGGGTATTAACG AAAGATGACGTGCTGGTGAAGCGCGACCTGACTGGCACAGTGGAAGAGAT GAAAAAGTTCAATGCCAAGCGGAAGTTCCGTGGCGCCGTCGCGGCCGTTA AGCTCATGAATCGCCTCAAAGCCTCAGGGAGCGCGCGACTCGACGACTCT ACTGATGACGGGGCCGATCTTGATGCGAGTGACAGTGCTGCGCCTGTCGT GTTCAAACCAGCGACGGGCAACATCTTGGCCACGAACGTTGCGGGAACGG CTTGA back to top
|