jgi.p|Nanoce1779_2|587845, mRNA_4771 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587845
Unique NamemRNA_4771
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length926
Alignment locationscaffold_9:600329..601772 -

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Properties
Property NameValue
TranscriptId587931
TrackFilteredModels2
ProteinId587845
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:600329..601772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587845gene_4771Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587845mRNA_4771-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4771CDS_4771Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4771 ID=mRNA_4771|Name=jgi.p|Nanoce1779_2|587845|organism=Nannochloropsis oceanica|type=mRNA|length=926bp
ACAGAAGAGATGGCTGCCGCGCTCCGTGTGGCTGCCTCTAGGGCGGCCCG
CAACGTCCTTGCCCGCTCGGGTGCCTCGCCCGCCTCCGTGGGCATGCCCG
TGCGTTGCCTGTCCTCTGCGGGCGGAGAGTATAATCCCTTCACCCACTCC
TTGGACCGACTCAATACCAAGAAGGTCGCCCAAACGCTAGATCTTGGCGA
CGGGAAGACGCAAAAGATCTTCGAGCGCATTAAGGTCGAGCCCCCTCCTG
AGCATACCCCCCCTATGAAGCTCGCGGGGCCCGTGGGGAAGATCACAAGC
AATCTGTACTTCTACGCGTCCATGAACGGCGTACTGGACGCCGTGGAGAA
GGACTTCAAGTTGATTGAAAAAGACTTGATTGGGACAAAAGAATGGTTGA
ACTCTAATGGATGGACGACAACGCAGAAGCTGGAGTTGGTGAATAAATTC
GTGGCAAAGGCCGGTTCTTTGTCTAGCTTTACCAAGGAGTTGCTACCTTA
CTTTGTGGAGCAGAAGATGTTGAAGCATTTGCCTGAGATTAAGGATTTGT
TTTTCAAGCTCGTCAAGGAGAAGCGCGGGGAGATTGATGTGTTTGTGACG
AGTGCGGACCCGCTGGATGCGGCCACGTTGAAGCAGTTGGAGGGGCTTAT
CATCAAGCAGATTGGGTCGTCGGCGGCGAGCAAGGTGAATTTCCAGACAG
ACGTGGACAAGGACCTAGTAGCCGGCCTGCGCATTCGGTACAAGAGCACC
CTGATCGACAACACCATCACCCGCAAGGTCACTGCAACGAAAGATGTCTG
GTCGAAGGCCTACCAGGAGACGATGGCTTTGTAAGGAGGAAGAGAGGGAG
AGAGGGAGGTAAGGTGGTAGGTGGTTGTGTCTAGATAGTAGGTCTGGAGA
TAGGGAAGGACGTGTGCAAGGAATCT
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protein sequence of jgi.p|Nanoce1779_2|587845

>mRNA_4771-protein ID=mRNA_4771-protein|Name=jgi.p|Nanoce1779_2|587845|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MAAALRVAASRAARNVLARSGASPASVGMPVRCLSSAGGEYNPFTHSLDR
LNTKKVAQTLDLGDGKTQKIFERIKVEPPPEHTPPMKLAGPVGKITSNLY
FYASMNGVLDAVEKDFKLIEKDLIGTKEWLNSNGWTTTQKLELVNKFVAK
AGSLSSFTKELLPYFVEQKMLKHLPEIKDLFFKLVKEKRGEIDVFVTSAD
PLDAATLKQLEGLIIKQIGSSAASKVNFQTDVDKDLVAGLRIRYKSTLID
NTITRKVTATKDVWSKAYQETMAL*
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mRNA from alignment at scaffold_9:600329..601772-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4771 ID=mRNA_4771|Name=jgi.p|Nanoce1779_2|587845|organism=Nannochloropsis oceanica|type=mRNA|length=1444bp|location=Sequence derived from alignment at scaffold_9:600329..601772- (Nannochloropsis oceanica)
ACAGAAGAGATGGCTGCCGCGCTCCGTGTGGCTGCCTCTAGGGCGGCCCG
CAACGTCCTTGCCCGCTCGGGTGCCTCGCCCGCCTCCGTGGGCATGCCCG
TGCGTTGCCTGTCCTCTGCGGGCGGAGAGTATAATCCCTTCACCCACTCC
TTGGACCGACTCAATACCAAGAAGGTAGGCAAGAGAGAGGGATAATAATA
GTGATGGGGTAGATATCGAACGGCGGATGCTTTGGCTTTTGTTGTGGTTG
TCTGGCTGCTCCCTATTCGTCATGTATCATTCGTGCGAGCCTTGTCGAGT
CCGCTTTTCCTGACTACAGCCTTTGGCCATGCTGTGATACTGTTCCTTCC
GATGCTCTGTACGAGAAAGACACTCGCTCAAGCTATGTCTCCGTGTGTTT
GTCTGACGATCAAATAAACCCTCCCTTTTCTGCCAAGCATTTCGTCTCAT
TCCATGAACTCACGGACCCCTCCCTCCCTCCCTCCCTCCCTTCTCCCCCC
AGGTCGCCCAAACGCTAGATCTTGGCGACGGGAAGACGCAAAAGATCTTC
GAGCGCATTAAGGTCGAGCCCCCTCCTGAGCATACCCCCCCTATGAAGCT
CGCGGGGCCCGTGGGGAAGATCACAAGCAATCTGTACTTCTACGCGTCCA
TGAACGGCGTACTGGACGCCGTGGAGAAGGACTTCAAGTTGATTGAAAAA
GACTTGATTGGGACAAAAGAATGGTTGAACTCTAATGGATGGACGACAAC
GCAGAAGCTGGAGTTGGTGAATAAATTCGTGGCAAAGGCCGGTTCTTTGT
CTAGCTTTACCAAGGAGTTGCTACCTTACTTTGTGGAGCAGAAGATGTTG
AAGCATTTGCCTGAGATTAAGGATTTGTTTTTCAAGCTCGTCAAGGAGAA
GCGCGGGGAGATTGATGTGTTTGTGACGAGTGCGGACCCGCTGGATGCGG
CCACGTTGAAGCAGTTGGAGGGGCTTATCATCAAGCAGATTGGGTCGTCG
GCGGCGAGCAAGGTGAGGGAGCGGAAAGGAAGGGAAGGAGGGCGGAAGGG
AAAGGGAAGGAGGATTGTGATGAAATGGCGGTGTGCACGACAAGGCCTTG
CAGCACCTGCAAAGAGAAGACATGCATAGACCACGATTACCCCGGGCTAC
AAACACCACTTACACCCCTCCCTCCATCCCTCCCCATTCGATTCTCCCCC
AGGTGAATTTCCAGACAGACGTGGACAAGGACCTAGTAGCCGGCCTGCGC
ATTCGGTACAAGAGCACCCTGATCGACAACACCATCACCCGCAAGGTCAC
TGCAACGAAAGATGTCTGGTCGAAGGCCTACCAGGAGACGATGGCTTTGT
AAGGAGGAAGAGAGGGAGAGAGGGAGGTAAGGTGGTAGGTGGTTGTGTCT
AGATAGTAGGTCTGGAGATAGGGAAGGACGTGTGCAAGGAATCT
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Coding sequence (CDS) from alignment at scaffold_9:600329..601772-

>mRNA_4771 ID=mRNA_4771|Name=jgi.p|Nanoce1779_2|587845|organism=Nannochloropsis oceanica|type=CDS|length=2475bp|location=Sequence derived from alignment at scaffold_9:600329..601772- (Nannochloropsis oceanica)
GTGAATTTCCAGACAGACGTGGACAAGGACCTAGTAGCCGGCCTGCGCAT
TCGGTACAAGAGCACCCTGATCGACAACACCATCACCCGCAAGGTCACTG
CAACGAAAGATGTCTGGTCGAAGGCCTACCAGGAGACGATGGCTTTGTAA
GTCGCCCAAACGCTAGATCTTGGCGACGGGAAGACGCAAAAGATCTTCGA
GCGCATTAAGGTCGAGCCCCCTCCTGAGCATACCCCCCCTATGAAGCTCG
CGGGGCCCGTGGGGAAGATCACAAGCAATCTGTACTTCTACGCGTCCATG
AACGGCGTACTGGACGCCGTGGAGAAGGACTTCAAGTTGATTGAAAAAGA
CTTGATTGGGACAAAAGAATGGTTGAACTCTAATGGATGGACGACAACGC
AGAAGCTGGAGTTGGTGAATAAATTCGTGGCAAAGGCCGGTTCTTTGTCT
AGCTTTACCAAGGAGTTGCTACCTTACTTTGTGGAGCAGAAGATGTTGAA
GCATTTGCCTGAGATTAAGGATTTGTTTTTCAAGCTCGTCAAGGAGAAGC
GCGGGGAGATTGATGTGTTTGTGACGAGTGCGGACCCGCTGGATGCGGCC
ACGTTGAAGCAGTTGGAGGGGCTTATCATCAAGCAGATTGGGTCGTCGGC
GGCGAGCAAGATGGCTGCCGCGCTCCGTGTGGCTGCCTCTAGGGCGGCCC
GCAACGTCCTTGCCCGCTCGGGTGCCTCGCCCGCCTCCGTGGGCATGCCC
GTGCGTTGCCTGTCCTCTGCGGGCGGAGAGTATAATCCCTTCACCCACTC
CTTGGACCGACTCAATACCAAGAAGGTGAATTTCCAGACAGACGTGGACA
AGGACCTAGTAGCCGGCCTGCGCATTCGGTACAAGAGCACCCTGATCGAC
AACACCATCACCCGCAAGGTCACTGCAACGAAAGATGTCTGGTCGAAGGC
CTACCAGGAGACGATGGCTTTGTAAGTCGCCCAAACGCTAGATCTTGGCG
ACGGGAAGACGCAAAAGATCTTCGAGCGCATTAAGGTCGAGCCCCCTCCT
GAGCATACCCCCCCTATGAAGCTCGCGGGGCCCGTGGGGAAGATCACAAG
CAATCTGTACTTCTACGCGTCCATGAACGGCGTACTGGACGCCGTGGAGA
AGGACTTCAAGTTGATTGAAAAAGACTTGATTGGGACAAAAGAATGGTTG
AACTCTAATGGATGGACGACAACGCAGAAGCTGGAGTTGGTGAATAAATT
CGTGGCAAAGGCCGGTTCTTTGTCTAGCTTTACCAAGGAGTTGCTACCTT
ACTTTGTGGAGCAGAAGATGTTGAAGCATTTGCCTGAGATTAAGGATTTG
TTTTTCAAGCTCGTCAAGGAGAAGCGCGGGGAGATTGATGTGTTTGTGAC
GAGTGCGGACCCGCTGGATGCGGCCACGTTGAAGCAGTTGGAGGGGCTTA
TCATCAAGCAGATTGGGTCGTCGGCGGCGAGCAAGATGGCTGCCGCGCTC
CGTGTGGCTGCCTCTAGGGCGGCCCGCAACGTCCTTGCCCGCTCGGGTGC
CTCGCCCGCCTCCGTGGGCATGCCCGTGCGTTGCCTGTCCTCTGCGGGCG
GAGAGTATAATCCCTTCACCCACTCCTTGGACCGACTCAATACCAAGAAG
GTGAATTTCCAGACAGACGTGGACAAGGACCTAGTAGCCGGCCTGCGCAT
TCGGTACAAGAGCACCCTGATCGACAACACCATCACCCGCAAGGTCACTG
CAACGAAAGATGTCTGGTCGAAGGCCTACCAGGAGACGATGGCTTTGTAA
GTCGCCCAAACGCTAGATCTTGGCGACGGGAAGACGCAAAAGATCTTCGA
GCGCATTAAGGTCGAGCCCCCTCCTGAGCATACCCCCCCTATGAAGCTCG
CGGGGCCCGTGGGGAAGATCACAAGCAATCTGTACTTCTACGCGTCCATG
AACGGCGTACTGGACGCCGTGGAGAAGGACTTCAAGTTGATTGAAAAAGA
CTTGATTGGGACAAAAGAATGGTTGAACTCTAATGGATGGACGACAACGC
AGAAGCTGGAGTTGGTGAATAAATTCGTGGCAAAGGCCGGTTCTTTGTCT
AGCTTTACCAAGGAGTTGCTACCTTACTTTGTGGAGCAGAAGATGTTGAA
GCATTTGCCTGAGATTAAGGATTTGTTTTTCAAGCTCGTCAAGGAGAAGC
GCGGGGAGATTGATGTGTTTGTGACGAGTGCGGACCCGCTGGATGCGGCC
ACGTTGAAGCAGTTGGAGGGGCTTATCATCAAGCAGATTGGGTCGTCGGC
GGCGAGCAAGATGGCTGCCGCGCTCCGTGTGGCTGCCTCTAGGGCGGCCC
GCAACGTCCTTGCCCGCTCGGGTGCCTCGCCCGCCTCCGTGGGCATGCCC
GTGCGTTGCCTGTCCTCTGCGGGCGGAGAGTATAATCCCTTCACCCACTC
CTTGGACCGACTCAATACCAAGAAG
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Synonyms
Publications