jgi.p|Nanoce1779_2|442831, mRNA_4770 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|442831
Unique NamemRNA_4770
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length3188
Alignment locationscaffold_9:596575..599762 +

Link to JBrowse

Properties
Property NameValue
TranscriptId442917
TrackFilteredModels2
ProteinId442831
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:596575..599762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|442831gene_4770Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|442831mRNA_4770-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4770CDS_4770Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4770 ID=mRNA_4770|Name=jgi.p|Nanoce1779_2|442831|organism=Nannochloropsis oceanica|type=mRNA|length=3188bp
TTTGAGTCGTTCAAAAGTCAAAAGATGAGGACTCAGTTTACCGGGGGTAC
CAGATCATAATCATTGCCTTCCCCGCGGCAGATAGTCCCACCTGCGTTCT
AAAAAGGCAGAGATGGAACGGATGCGAGTCTTCTAGGTGTGGGATCGTTG
CGTCCATGGAGCGTGTTTTGTACGAGCTCTGGCTTTTCCCTCCTTTCCAG
CATCACCAGGCCGCCAAAAACTTGTTCTTATCCCATCCACCGCCCTGCGA
CCACCATTGCTACGAACGCATGTCCCGCAGACCCTATTGATCACGCTCCT
TGCTATCTCCATTCATCATCAAACAGGACAATTGACATCGCGTTTTCCTT
TTTGGTGCCGACCCCAGGGAAAAATCCAATCCCCAAATCATCACCAGCAT
CACATCCTACGATTGAAAACCAAAAGCTAAGCCACGACAAACATGTCGGA
GGTCGAGACCATGCCCATGTCGTCCAGCACAATAGAGGGACAAGATCAGC
AACAACAGTGCGAGCACATGAAAGGTAGTGCTGGCCCCGAGCCGGAGCCG
TCGTCGACAGCCACCGATGGCGCGGATGCTGCTGCTTCTCCTGCTGCTGC
CGATGTTGCGACGGGCGAGGGAAAGCAAGTCGAGGAGGCGGAGGCCCCCG
TCGCCACGGAGCGTGATAATCTGTCACTGAAAATCAAGGAGGAAGTGGCC
GAGGCAGACGGCAAGGAGCGCAAAGAGGAAGGAAAGGGCGATGTAGAGCA
ACCACCACAACAGACACCGCAGCCACCCTCTTCTTCCCCCCAACGCGACG
AGAACGAAGTCGAGGACCCAGAAGTAGCCAGCGCCACGAAGAAGGAAGAA
GAAGAGAAGCAGGGCCCTCTAAACAACAACGCTCCCTCCGCGGCTATCCC
TTCGACAGCAGGCGCCAGCGTGGGGGCCTTGCCGCAACCTCCTCACTCAA
TCAGCACGTCGGTCAGCAGCAACAGGGTGGTGGATATAAAACAAAATTGG
GAAGACCAACAAGCCCACGCAATAACTATGGCCACCTCTACCACCGCTAA
TGCGGTCCAAGCCACGAGTGCGGGCCCTCTCTCCGATGACCGAGGAGGGG
GAGGAGGAGGCGGGGAAGGGGGAGGAGAAGCGTCTCCTGCCTCCTCCGCT
GGCCTGCAGCAAGCCGCTCAACCATCCTTGCCTCCCGCCCTGGCCATGCC
CTACCTTCCTCAGTTTACCGAGATGGATGGGATGGCCCCTGGGTGTAATT
GCAAGCGAAGCCGATGCCTTAAGCTCTACTGTCAATGTTTCGCCGCCCAA
GCCTGTTGTATCTCGGCGTGCAACTGCCAAGGCTGCCTGAACCTGCCAGC
ACACAACCACATCCGCGCGGAGGCCATCCGCCAAATCGTGGAACGGAATC
CCAATGCCTTTCAGACCAAGTTTCGCCCCGATGGCGAAGACGCCGTCCAC
AAGCTCGGCTGCAAATGTCGGAAATCCGCGTGTCTGAAAAAGTACTGCGA
ATGCTTCAATGCGGGCGCCCGCTGCTCCGACAAGTGCTCCTGTATCAACT
GCCAGAATGTAGCTGGCATTGGTCGTCCCTACGAAGAAGCAGTGATGGCT
GCCCGTCGGGGAGCAACAGCGGCAAGACAAGCAGCCCAAGTGGCAGGACA
GAACCCGGCCTTGGCTACACCGCAACCGCACATGATGGCCTCCATGGTAG
CGGCGGCCCTGCGGCAGCAGCAGCCATACCACCAGCTGATTGGAGGTGGA
GCGATAAAAGAGGAAGGTGTTGGGGGAAGAGGCTTGGGGGGGGGGTCGCC
GGCGCACAAGAGAAAGAGGAGCGGGAGTAGTGGGGAGGTAGGGGTGGGAG
GAGAAGGAGGAGGAGAAGGCGGAGGGGATGAGCAACACCAGCTCCATCGT
CCCCCCATTATGTCCCCTATCTCCACAGGACTACGTGCTTCTCCTTCGCA
GCAACAGCAGCAACAAACACCAGCAGCCGCGGCTGCCGCTGCTGCGGCAG
CCGCGGCTGCGGCGCAAGCACAGGAGTTTGCGAGTCAGGGCTTGTTCGGG
ATTCCTGGGCACCCTGGCTTCCTTCCCTTCCTCCCCCCCGGCCAACCAGC
GGCTTTCTACGAGCAACAGGCCGCGCTTATGGCATCGCAAACATTGCAGC
AGCAGCAGCAACAGCTGGAGTTCATCCAGCGGCAGCAGCAAGCTCAATTT
CAGTTGTTCCAGCAGCAGTACCAGCAGCAGCAGCAGCAGAACCAGCGGCA
GCACCACCAGCAGGCTATGCAGCAGTCTTTGTCCCCTACCCAGCTCCTAC
TCCTCCAGGCACAGCAACAACACCAATATTTCCAGCAGCAGCAGTTGCAT
CAGCAGCATCAACAGCAAATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAACAACGGCAACAGGCAGGAAGGGGAGGAGGGAGGGGGGGAGGGAAAA
AGTCCGCCGAGGCGCCAGGAGGGGACGACCTTGAAGAGATGGTGCAAGCA
GCGGAAGACTTGGCATTCTTGAAAGGGTCGAGTGGTCCGGGAAGTAAAGG
CCATGCAGAAGTGGAGGCACAACTCAACCAAGCCAACCACCAGCAGCAGC
AACAGGCAGCGCTGCAGCAACAACAACTCATGGCCGCAGCGGTCGCGCTG
GCCTCGGCGCAAGGCGGTGGCGGAGGGGGAGGAGAAGGAGGAGGAGGAGG
AGGGGGAGGAGGAAGGCCGGAACAGCAACTTTATGCGCAGCAGTTCATGG
GACATCCGGCTTTTGCTGCTATGGCCATGCAGCAACAGCTGGATCCCGCT
CAGGCGGCGGCAGTTTATGCACAAATGCAGCAGCAGATGCAGGAACAGCA
GAAACAGCAGCAACAGCAACAACAACAACAAGTTGGTGGTGGAAGAGGAG
GAGGAGGAGGAGGAGAGGGAGGGGAGGGAGGATTAGGACAGCATGAGTCG
GTGTGACGGAGGAGGGATGAAAGGATGTAGAGAGGGATGGAGAGCAAGAA
TGAATGACGAGTATTGTTTTCAAAGAGGTAGGTCGGAGACATAGAGCAAA
GCTCGGTCCCACAGAAGGCGAAACGGGAGGGAGGAAAGTTTAAAGAGGGC
TCGGCGGCGTCGGTCGTGCAGGGAGGGGATAAGGAGTCAAAATGGAAAGC
CTGGAGAAACGCCAAGAAATAAAGTCCTTTGAGACGAT
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protein sequence of jgi.p|Nanoce1779_2|442831

>mRNA_4770-protein ID=mRNA_4770-protein|Name=jgi.p|Nanoce1779_2|442831|organism=Nannochloropsis oceanica|type=polypeptide|length=838bp
MSEVETMPMSSSTIEGQDQQQQCEHMKGSAGPEPEPSSTATDGADAAASP
AAADVATGEGKQVEEAEAPVATERDNLSLKIKEEVAEADGKERKEEGKGD
VEQPPQQTPQPPSSSPQRDENEVEDPEVASATKKEEEEKQGPLNNNAPSA
AIPSTAGASVGALPQPPHSISTSVSSNRVVDIKQNWEDQQAHAITMATST
TANAVQATSAGPLSDDRGGGGGGGEGGGEASPASSAGLQQAAQPSLPPAL
AMPYLPQFTEMDGMAPGCNCKRSRCLKLYCQCFAAQACCISACNCQGCLN
LPAHNHIRAEAIRQIVERNPNAFQTKFRPDGEDAVHKLGCKCRKSACLKK
YCECFNAGARCSDKCSCINCQNVAGIGRPYEEAVMAARRGATAARQAAQV
AGQNPALATPQPHMMASMVAAALRQQQPYHQLIGGGAIKEEGVGGRGLGG
GSPAHKRKRSGSSGEVGVGGEGGGEGGGDEQHQLHRPPIMSPISTGLRAS
PSQQQQQQTPAAAAAAAAAAAAAAQAQEFASQGLFGIPGHPGFLPFLPPG
QPAAFYEQQAALMASQTLQQQQQQLEFIQRQQQAQFQLFQQQYQQQQQQN
QRQHHQQAMQQSLSPTQLLLLQAQQQHQYFQQQQLHQQHQQQMQQQQQQQ
QQQQQRQQAGRGGGRGGGKKSAEAPGGDDLEEMVQAAEDLAFLKGSSGPG
SKGHAEVEAQLNQANHQQQQQAALQQQQLMAAAVALASAQGGGGGGGEGG
GGGGGGGRPEQQLYAQQFMGHPAFAAMAMQQQLDPAQAAAVYAQMQQQMQ
EQQKQQQQQQQQQVGGGRGGGGGGEGGEGGLGQHESV*
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mRNA from alignment at scaffold_9:596575..599762+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4770 ID=mRNA_4770|Name=jgi.p|Nanoce1779_2|442831|organism=Nannochloropsis oceanica|type=mRNA|length=3188bp|location=Sequence derived from alignment at scaffold_9:596575..599762+ (Nannochloropsis oceanica)
TTTGAGTCGTTCAAAAGTCAAAAGATGAGGACTCAGTTTACCGGGGGTAC CAGATCATAATCATTGCCTTCCCCGCGGCAGATAGTCCCACCTGCGTTCT AAAAAGGCAGAGATGGAACGGATGCGAGTCTTCTAGGTGTGGGATCGTTG CGTCCATGGAGCGTGTTTTGTACGAGCTCTGGCTTTTCCCTCCTTTCCAG CATCACCAGGCCGCCAAAAACTTGTTCTTATCCCATCCACCGCCCTGCGA CCACCATTGCTACGAACGCATGTCCCGCAGACCCTATTGATCACGCTCCT TGCTATCTCCATTCATCATCAAACAGGACAATTGACATCGCGTTTTCCTT TTTGGTGCCGACCCCAGGGAAAAATCCAATCCCCAAATCATCACCAGCAT CACATCCTACGATTGAAAACCAAAAGCTAAGCCACGACAAACATGTCGGA GGTCGAGACCATGCCCATGTCGTCCAGCACAATAGAGGGACAAGATCAGC AACAACAGTGCGAGCACATGAAAGGTAGTGCTGGCCCCGAGCCGGAGCCG TCGTCGACAGCCACCGATGGCGCGGATGCTGCTGCTTCTCCTGCTGCTGC CGATGTTGCGACGGGCGAGGGAAAGCAAGTCGAGGAGGCGGAGGCCCCCG TCGCCACGGAGCGTGATAATCTGTCACTGAAAATCAAGGAGGAAGTGGCC GAGGCAGACGGCAAGGAGCGCAAAGAGGAAGGAAAGGGCGATGTAGAGCA ACCACCACAACAGACACCGCAGCCACCCTCTTCTTCCCCCCAACGCGACG AGAACGAAGTCGAGGACCCAGAAGTAGCCAGCGCCACGAAGAAGGAAGAA GAAGAGAAGCAGGGCCCTCTAAACAACAACGCTCCCTCCGCGGCTATCCC TTCGACAGCAGGCGCCAGCGTGGGGGCCTTGCCGCAACCTCCTCACTCAA TCAGCACGTCGGTCAGCAGCAACAGGGTGGTGGATATAAAACAAAATTGG GAAGACCAACAAGCCCACGCAATAACTATGGCCACCTCTACCACCGCTAA TGCGGTCCAAGCCACGAGTGCGGGCCCTCTCTCCGATGACCGAGGAGGGG GAGGAGGAGGCGGGGAAGGGGGAGGAGAAGCGTCTCCTGCCTCCTCCGCT GGCCTGCAGCAAGCCGCTCAACCATCCTTGCCTCCCGCCCTGGCCATGCC CTACCTTCCTCAGTTTACCGAGATGGATGGGATGGCCCCTGGGTGTAATT GCAAGCGAAGCCGATGCCTTAAGCTCTACTGTCAATGTTTCGCCGCCCAA GCCTGTTGTATCTCGGCGTGCAACTGCCAAGGCTGCCTGAACCTGCCAGC ACACAACCACATCCGCGCGGAGGCCATCCGCCAAATCGTGGAACGGAATC CCAATGCCTTTCAGACCAAGTTTCGCCCCGATGGCGAAGACGCCGTCCAC AAGCTCGGCTGCAAATGTCGGAAATCCGCGTGTCTGAAAAAGTACTGCGA ATGCTTCAATGCGGGCGCCCGCTGCTCCGACAAGTGCTCCTGTATCAACT GCCAGAATGTAGCTGGCATTGGTCGTCCCTACGAAGAAGCAGTGATGGCT GCCCGTCGGGGAGCAACAGCGGCAAGACAAGCAGCCCAAGTGGCAGGACA GAACCCGGCCTTGGCTACACCGCAACCGCACATGATGGCCTCCATGGTAG CGGCGGCCCTGCGGCAGCAGCAGCCATACCACCAGCTGATTGGAGGTGGA GCGATAAAAGAGGAAGGTGTTGGGGGAAGAGGCTTGGGGGGGGGGTCGCC GGCGCACAAGAGAAAGAGGAGCGGGAGTAGTGGGGAGGTAGGGGTGGGAG GAGAAGGAGGAGGAGAAGGCGGAGGGGATGAGCAACACCAGCTCCATCGT CCCCCCATTATGTCCCCTATCTCCACAGGACTACGTGCTTCTCCTTCGCA GCAACAGCAGCAACAAACACCAGCAGCCGCGGCTGCCGCTGCTGCGGCAG CCGCGGCTGCGGCGCAAGCACAGGAGTTTGCGAGTCAGGGCTTGTTCGGG ATTCCTGGGCACCCTGGCTTCCTTCCCTTCCTCCCCCCCGGCCAACCAGC GGCTTTCTACGAGCAACAGGCCGCGCTTATGGCATCGCAAACATTGCAGC AGCAGCAGCAACAGCTGGAGTTCATCCAGCGGCAGCAGCAAGCTCAATTT CAGTTGTTCCAGCAGCAGTACCAGCAGCAGCAGCAGCAGAACCAGCGGCA GCACCACCAGCAGGCTATGCAGCAGTCTTTGTCCCCTACCCAGCTCCTAC TCCTCCAGGCACAGCAACAACACCAATATTTCCAGCAGCAGCAGTTGCAT CAGCAGCATCAACAGCAAATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAACAACGGCAACAGGCAGGAAGGGGAGGAGGGAGGGGGGGAGGGAAAA AGTCCGCCGAGGCGCCAGGAGGGGACGACCTTGAAGAGATGGTGCAAGCA GCGGAAGACTTGGCATTCTTGAAAGGGTCGAGTGGTCCGGGAAGTAAAGG CCATGCAGAAGTGGAGGCACAACTCAACCAAGCCAACCACCAGCAGCAGC AACAGGCAGCGCTGCAGCAACAACAACTCATGGCCGCAGCGGTCGCGCTG GCCTCGGCGCAAGGCGGTGGCGGAGGGGGAGGAGAAGGAGGAGGAGGAGG AGGGGGAGGAGGAAGGCCGGAACAGCAACTTTATGCGCAGCAGTTCATGG GACATCCGGCTTTTGCTGCTATGGCCATGCAGCAACAGCTGGATCCCGCT CAGGCGGCGGCAGTTTATGCACAAATGCAGCAGCAGATGCAGGAACAGCA GAAACAGCAGCAACAGCAACAACAACAACAAGTTGGTGGTGGAAGAGGAG GAGGAGGAGGAGGAGAGGGAGGGGAGGGAGGATTAGGACAGCATGAGTCG GTGTGACGGAGGAGGGATGAAAGGATGTAGAGAGGGATGGAGAGCAAGAA TGAATGACGAGTATTGTTTTCAAAGAGGTAGGTCGGAGACATAGAGCAAA GCTCGGTCCCACAGAAGGCGAAACGGGAGGGAGGAAAGTTTAAAGAGGGC TCGGCGGCGTCGGTCGTGCAGGGAGGGGATAAGGAGTCAAAATGGAAAGC CTGGAGAAACGCCAAGAAATAAAGTCCTTTGAGACGAT
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Coding sequence (CDS) from alignment at scaffold_9:596575..599762+

>mRNA_4770 ID=mRNA_4770|Name=jgi.p|Nanoce1779_2|442831|organism=Nannochloropsis oceanica|type=CDS|length=2514bp|location=Sequence derived from alignment at scaffold_9:596575..599762+ (Nannochloropsis oceanica)
ATGTCGGAGGTCGAGACCATGCCCATGTCGTCCAGCACAATAGAGGGACA
AGATCAGCAACAACAGTGCGAGCACATGAAAGGTAGTGCTGGCCCCGAGC
CGGAGCCGTCGTCGACAGCCACCGATGGCGCGGATGCTGCTGCTTCTCCT
GCTGCTGCCGATGTTGCGACGGGCGAGGGAAAGCAAGTCGAGGAGGCGGA
GGCCCCCGTCGCCACGGAGCGTGATAATCTGTCACTGAAAATCAAGGAGG
AAGTGGCCGAGGCAGACGGCAAGGAGCGCAAAGAGGAAGGAAAGGGCGAT
GTAGAGCAACCACCACAACAGACACCGCAGCCACCCTCTTCTTCCCCCCA
ACGCGACGAGAACGAAGTCGAGGACCCAGAAGTAGCCAGCGCCACGAAGA
AGGAAGAAGAAGAGAAGCAGGGCCCTCTAAACAACAACGCTCCCTCCGCG
GCTATCCCTTCGACAGCAGGCGCCAGCGTGGGGGCCTTGCCGCAACCTCC
TCACTCAATCAGCACGTCGGTCAGCAGCAACAGGGTGGTGGATATAAAAC
AAAATTGGGAAGACCAACAAGCCCACGCAATAACTATGGCCACCTCTACC
ACCGCTAATGCGGTCCAAGCCACGAGTGCGGGCCCTCTCTCCGATGACCG
AGGAGGGGGAGGAGGAGGCGGGGAAGGGGGAGGAGAAGCGTCTCCTGCCT
CCTCCGCTGGCCTGCAGCAAGCCGCTCAACCATCCTTGCCTCCCGCCCTG
GCCATGCCCTACCTTCCTCAGTTTACCGAGATGGATGGGATGGCCCCTGG
GTGTAATTGCAAGCGAAGCCGATGCCTTAAGCTCTACTGTCAATGTTTCG
CCGCCCAAGCCTGTTGTATCTCGGCGTGCAACTGCCAAGGCTGCCTGAAC
CTGCCAGCACACAACCACATCCGCGCGGAGGCCATCCGCCAAATCGTGGA
ACGGAATCCCAATGCCTTTCAGACCAAGTTTCGCCCCGATGGCGAAGACG
CCGTCCACAAGCTCGGCTGCAAATGTCGGAAATCCGCGTGTCTGAAAAAG
TACTGCGAATGCTTCAATGCGGGCGCCCGCTGCTCCGACAAGTGCTCCTG
TATCAACTGCCAGAATGTAGCTGGCATTGGTCGTCCCTACGAAGAAGCAG
TGATGGCTGCCCGTCGGGGAGCAACAGCGGCAAGACAAGCAGCCCAAGTG
GCAGGACAGAACCCGGCCTTGGCTACACCGCAACCGCACATGATGGCCTC
CATGGTAGCGGCGGCCCTGCGGCAGCAGCAGCCATACCACCAGCTGATTG
GAGGTGGAGCGATAAAAGAGGAAGGTGTTGGGGGAAGAGGCTTGGGGGGG
GGGTCGCCGGCGCACAAGAGAAAGAGGAGCGGGAGTAGTGGGGAGGTAGG
GGTGGGAGGAGAAGGAGGAGGAGAAGGCGGAGGGGATGAGCAACACCAGC
TCCATCGTCCCCCCATTATGTCCCCTATCTCCACAGGACTACGTGCTTCT
CCTTCGCAGCAACAGCAGCAACAAACACCAGCAGCCGCGGCTGCCGCTGC
TGCGGCAGCCGCGGCTGCGGCGCAAGCACAGGAGTTTGCGAGTCAGGGCT
TGTTCGGGATTCCTGGGCACCCTGGCTTCCTTCCCTTCCTCCCCCCCGGC
CAACCAGCGGCTTTCTACGAGCAACAGGCCGCGCTTATGGCATCGCAAAC
ATTGCAGCAGCAGCAGCAACAGCTGGAGTTCATCCAGCGGCAGCAGCAAG
CTCAATTTCAGTTGTTCCAGCAGCAGTACCAGCAGCAGCAGCAGCAGAAC
CAGCGGCAGCACCACCAGCAGGCTATGCAGCAGTCTTTGTCCCCTACCCA
GCTCCTACTCCTCCAGGCACAGCAACAACACCAATATTTCCAGCAGCAGC
AGTTGCATCAGCAGCATCAACAGCAAATGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAACAACGGCAACAGGCAGGAAGGGGAGGAGGGAGGGGGGG
AGGGAAAAAGTCCGCCGAGGCGCCAGGAGGGGACGACCTTGAAGAGATGG
TGCAAGCAGCGGAAGACTTGGCATTCTTGAAAGGGTCGAGTGGTCCGGGA
AGTAAAGGCCATGCAGAAGTGGAGGCACAACTCAACCAAGCCAACCACCA
GCAGCAGCAACAGGCAGCGCTGCAGCAACAACAACTCATGGCCGCAGCGG
TCGCGCTGGCCTCGGCGCAAGGCGGTGGCGGAGGGGGAGGAGAAGGAGGA
GGAGGAGGAGGGGGAGGAGGAAGGCCGGAACAGCAACTTTATGCGCAGCA
GTTCATGGGACATCCGGCTTTTGCTGCTATGGCCATGCAGCAACAGCTGG
ATCCCGCTCAGGCGGCGGCAGTTTATGCACAAATGCAGCAGCAGATGCAG
GAACAGCAGAAACAGCAGCAACAGCAACAACAACAACAAGTTGGTGGTGG
AAGAGGAGGAGGAGGAGGAGGAGAGGGAGGGGAGGGAGGATTAGGACAGC
ATGAGTCGGTGTGA
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Synonyms
Publications