jgi.p|Nanoce1779_2|577419, mRNA_477 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577419
Unique Name	mRNA_477
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2747
Alignment location	scaffold_3:1158992..1161738 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577505
Track	FilteredModels2
ProteinId	577419

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1158992..1161738 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577419	gene_477	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577419	mRNA_477-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_477	CDS_477	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1158992..1161738+
coding sequence from alignment at scaffold_3:1158992..1161738+

mRNA sequence

>mRNA_477 ID=mRNA_477|Name=jgi.p|Nanoce1779_2|577419|organism=Nannochloropsis oceanica|type=mRNA|length=2747bp
AGGAAAGGCAGGCATGGGGGTTGGCGATGGAGCTTGAAGCGAGGAATTTG
GCGAGGAAAACGTTGAAGGGGTGGTTGCATGCGGCGGGGCGACAAGCAAG
GGAGATGGAAGAGCTTTCGCAAGAGGGCGGCGAGAAGAGGATGCGACGAC
GGCAAGCTGGAGCATTTCAACAATTAAGGCTTTATGCCCAGCACCGGCAT
CTCGCCAAGATACTGCATGGTGTTGTCTTGCTCAGAAAAGCAAGGCGGCG
ACTGGAAGAATGGAAGTCCTGTGCACGAGAACGAAGCAAGCGACGAGACC
TAGTCATCCAGCACCAGCAGCAACGATATCGGTCCCTGGTTCTCGACTTC
TTCTTCCGCTGGATACGGTACCATTTGCTCCACCTTGCTTCCCAGCGAGT
CCACACTCTAAACTATTCCAAGCTCGCCCGCCAAGTGCTGCAAACCTTCC
ACCGCGCCCTACACATCTCCCGAAGCGCTCAAGTGATCGCATGTCGGCGT
CGGGCAAAATCACAAAGACAGTGCCTCCAGTGGTGGACTGCAGCAGCAAT
GCACTTCCAAAAACGTCGACGCCTCTACATGGCACGAGGCCTCCGTCGCT
GGCGCCTGGCAGTCGCTCAACAGCGACTGCAGCGTGGGATTGAGACAGGT
CTAGGGGGAAAGGCCAGGAGGCGTACCATAGGCCGACGGGGGCTTGCAGC
ATTGCTCAAGTGGGCGGAGACTCGTCGCTTAGGCGAAAGGCGGATTATTG
CTGCCAGCGAGCAGAGGAGGCGGGCGGAGGAACGACGATGCCATACAGCC
TTGAGGGAATGGAGGGAGGGAAGTAAGGAAAGGTACCACTGGCAGTGTCT
GGAGGAAGATGCAGGGGATTGGGCGCAGCGGCGGGGAAAGGCAGTGGGTC
TGTTCGCGTTCACAAAATGTCATGGAAGAAGGATGCTGGATGGGGACACA
CGGAAGATGGCCGAGTACTTTCATCGGCAACGGCGACTACATCGGGGCCT
GATGGTACTGCAGCGGCTGCGCTTGTCGGCGGTGGTCCTTCCTGCTTTTC
GTGAGCGTGCTATACGGAGGTGGTGCTTACACCGAGAGTGGGGAAGATTG
GTGGTGGGTCATACGCGCTGTGTGGGAGATCGGCAGAGGCAGGAGCAGAC
AGCACTGCTGGCAGAGGGGCAGTGGGAAACACGTCGACTCATTATTGCCG
TGGGCCAGCTCGAACGAGCTCGGATCTTGACTCGACGGGTGGAGGAGGTT
CAACAACACAAGCACTCTCTGTTGGTTCTTCAGTCTCTTCATATGTGGAC
ACGTGAAACTCAAATAGCTCAAGGCCTTCGTCGATTTCAGCGTCGATCCC
AGGAGTGGCTACTGGCTGGAGTAATGCGTGCGTGGGAGAGGTGGACCGCA
CAGCAGTCAGTGCGTCGGGCGGCGTTGATAGAGGTGTCGCAGAAGGCACG
TCGAGCCGAGTATTTTCATGCATGGCGGGGGTCGATTCACCGGAGGAAGG
AGCTGCAGATGCGGGCGAGGGAGGTGATGCAGTTGGTGGAGGAGGGGCTT
CTACAGCGTGCGTGGATGTTTGGGTGGAGGGTAGCGTATGAGGACGTTTG
TCGGGAGCGACGCTCAGAGAGGCTGTTTTTGCGGTATCGGGGATGGGAGC
CCTGGCGACGATGGGTGCGAGAAAAGAAGAAGGAGATAAAGAGAGTGGAG
ACGGTGCAGTCCTTAATGGCAACGCGTTTGTTTCGTCTCAGTTTGGAAGG
ATGGGGGGAGGCATTTCGACTTGCAAGAAGGGAGGAGGAAGCAGTTCAGA
TTATGGTTGAAAGGCGGGCAGTTCAAGTCTTGCGACGATGGGATACACGA
AGTGTACGTTTACGGCAGCAGAAAATATGTGATGCGTATCATTTAGCCCA
TTACTTTGGCTACTGGCGTAGATATGCGGGACGAGCCAAGCGACACGAGG
TGTGGGTAGAGCGAATTCAGGCCTGGGGGGCAGCCAGACCGACGATGGTC
CGAGCTTTGGCCAGTCTTTGCCCATCGGCCCAAAAGCAGCTGGCATGGCA
GGCGTGGATGGCTTGGTATGGGCTGCGGATTCAAGCCCGAGAAGTGAGGA
AATATGGCGAAGTCCACCGTGCGCGGGGACAGGGCTTGATGTCCGTTCGA
CGGTTGCGGGAGCTGGTGCTGACGCGGAAGGAGAAGCGTGCCCGTGAGGA
GTTTAATGAAGGGCTTGCGGAGCATTTTAGGAAGGCCAAGGGGTTTTGTC
GCCTGAAGGATCGGTTGTGGGAGGAAAGGAGGGAACGACGGTTGATCAGG
AGACGAGAGATGGAGGCCCGGTCAGAGCGGGATAGGAGGGAATGTTTGCA
GGAAGCGTTTGGGCGATGGTCAGTGTATACAACCACGATGCAGCAGGCTA
TGGCGTGGTTTCATTCTCTCCCGCGGGAAGGTGAGCGGGAGGATAAGGAC
GGTCGCATAAGAAGGAGAAGAAGCATCAGCATCAGCAGCAGCAGCAGTGC
GGGCGGTGGTGAGAGCGGTTGTGGGAAAGATGAGCATGGAGATATCTTAC
TGCCCGAGACGGGAGATAGTTTCGACTGGACATCAAACGTCGTAGTGTAG
GTGAGGGAAGAACAAAGTGCATAGAGACAAGGAGACGAGACGGCGATGCT
CCTGCCGAAGAGCACTTCCAAACTTAGTGAGCGGAGAAACGTGGCAAGTG
TACAAACACAATATGTAATGCACGCAAAAGAACAAAAAAAAGACAAC

protein sequence of jgi.p|Nanoce1779_2|577419

>mRNA_477-protein ID=mRNA_477-protein|Name=jgi.p|Nanoce1779_2|577419|organism=Nannochloropsis oceanica|type=polypeptide|length=858bp
MELEARNLARKTLKGWLHAAGRQAREMEELSQEGGEKRMRRRQAGAFQQL
RLYAQHRHLAKILHGVVLLRKARRRLEEWKSCARERSKRRDLVIQHQQQR
YRSLVLDFFFRWIRYHLLHLASQRVHTLNYSKLARQVLQTFHRALHISRS
AQVIACRRRAKSQRQCLQWWTAAAMHFQKRRRLYMARGLRRWRLAVAQQR
LQRGIETGLGGKARRRTIGRRGLAALLKWAETRRLGERRIIAASEQRRRA
EERRCHTALREWREGSKERYHWQCLEEDAGDWAQRRGKAVGLFAFTKCHG
RRMLDGDTRKMAEYFHRQRRLHRGLMVLQRLRLSAVVLPAFRERAIRRWC
LHREWGRLVVGHTRCVGDRQRQEQTALLAEGQWETRRLIIAVGQLERARI
LTRRVEEVQQHKHSLLVLQSLHMWTRETQIAQGLRRFQRRSQEWLLAGVM
RAWERWTAQQSVRRAALIEVSQKARRAEYFHAWRGSIHRRKELQMRAREV
MQLVEEGLLQRAWMFGWRVAYEDVCRERRSERLFLRYRGWEPWRRWVREK
KKEIKRVETVQSLMATRLFRLSLEGWGEAFRLARREEEAVQIMVERRAVQ
VLRRWDTRSVRLRQQKICDAYHLAHYFGYWRRYAGRAKRHEVWVERIQAW
GAARPTMVRALASLCPSAQKQLAWQAWMAWYGLRIQAREVRKYGEVHRAR
GQGLMSVRRLRELVLTRKEKRAREEFNEGLAEHFRKAKGFCRLKDRLWEE
RRERRLIRRREMEARSERDRRECLQEAFGRWSVYTTTMQQAMAWFHSLPR
EGEREDKDGRIRRRRSISISSSSSAGGGESGCGKDEHGDILLPETGDSFD
WTSNVVV*

mRNA from alignment at scaffold_3:1158992..1161738+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_477 ID=mRNA_477|Name=jgi.p|Nanoce1779_2|577419|organism=Nannochloropsis oceanica|type=mRNA|length=2747bp|location=Sequence derived from alignment at scaffold_3:1158992..1161738+ (Nannochloropsis oceanica)
AGGAAAGGCAGGCATGGGGGTTGGCGATGGAGCTTGAAGCGAGGAATTTG
GCGAGGAAAACGTTGAAGGGGTGGTTGCATGCGGCGGGGCGACAAGCAAG
GGAGATGGAAGAGCTTTCGCAAGAGGGCGGCGAGAAGAGGATGCGACGAC
GGCAAGCTGGAGCATTTCAACAATTAAGGCTTTATGCCCAGCACCGGCAT
CTCGCCAAGATACTGCATGGTGTTGTCTTGCTCAGAAAAGCAAGGCGGCG
ACTGGAAGAATGGAAGTCCTGTGCACGAGAACGAAGCAAGCGACGAGACC
TAGTCATCCAGCACCAGCAGCAACGATATCGGTCCCTGGTTCTCGACTTC
TTCTTCCGCTGGATACGGTACCATTTGCTCCACCTTGCTTCCCAGCGAGT
CCACACTCTAAACTATTCCAAGCTCGCCCGCCAAGTGCTGCAAACCTTCC
ACCGCGCCCTACACATCTCCCGAAGCGCTCAAGTGATCGCATGTCGGCGT
CGGGCAAAATCACAAAGACAGTGCCTCCAGTGGTGGACTGCAGCAGCAAT
GCACTTCCAAAAACGTCGACGCCTCTACATGGCACGAGGCCTCCGTCGCT
GGCGCCTGGCAGTCGCTCAACAGCGACTGCAGCGTGGGATTGAGACAGGT
CTAGGGGGAAAGGCCAGGAGGCGTACCATAGGCCGACGGGGGCTTGCAGC
ATTGCTCAAGTGGGCGGAGACTCGTCGCTTAGGCGAAAGGCGGATTATTG
CTGCCAGCGAGCAGAGGAGGCGGGCGGAGGAACGACGATGCCATACAGCC
TTGAGGGAATGGAGGGAGGGAAGTAAGGAAAGGTACCACTGGCAGTGTCT
GGAGGAAGATGCAGGGGATTGGGCGCAGCGGCGGGGAAAGGCAGTGGGTC
TGTTCGCGTTCACAAAATGTCATGGAAGAAGGATGCTGGATGGGGACACA
CGGAAGATGGCCGAGTACTTTCATCGGCAACGGCGACTACATCGGGGCCT
GATGGTACTGCAGCGGCTGCGCTTGTCGGCGGTGGTCCTTCCTGCTTTTC
GTGAGCGTGCTATACGGAGGTGGTGCTTACACCGAGAGTGGGGAAGATTG
GTGGTGGGTCATACGCGCTGTGTGGGAGATCGGCAGAGGCAGGAGCAGAC
AGCACTGCTGGCAGAGGGGCAGTGGGAAACACGTCGACTCATTATTGCCG
TGGGCCAGCTCGAACGAGCTCGGATCTTGACTCGACGGGTGGAGGAGGTT
CAACAACACAAGCACTCTCTGTTGGTTCTTCAGTCTCTTCATATGTGGAC
ACGTGAAACTCAAATAGCTCAAGGCCTTCGTCGATTTCAGCGTCGATCCC
AGGAGTGGCTACTGGCTGGAGTAATGCGTGCGTGGGAGAGGTGGACCGCA
CAGCAGTCAGTGCGTCGGGCGGCGTTGATAGAGGTGTCGCAGAAGGCACG
TCGAGCCGAGTATTTTCATGCATGGCGGGGGTCGATTCACCGGAGGAAGG
AGCTGCAGATGCGGGCGAGGGAGGTGATGCAGTTGGTGGAGGAGGGGCTT
CTACAGCGTGCGTGGATGTTTGGGTGGAGGGTAGCGTATGAGGACGTTTG
TCGGGAGCGACGCTCAGAGAGGCTGTTTTTGCGGTATCGGGGATGGGAGC
CCTGGCGACGATGGGTGCGAGAAAAGAAGAAGGAGATAAAGAGAGTGGAG
ACGGTGCAGTCCTTAATGGCAACGCGTTTGTTTCGTCTCAGTTTGGAAGG
ATGGGGGGAGGCATTTCGACTTGCAAGAAGGGAGGAGGAAGCAGTTCAGA
TTATGGTTGAAAGGCGGGCAGTTCAAGTCTTGCGACGATGGGATACACGA
AGTGTACGTTTACGGCAGCAGAAAATATGTGATGCGTATCATTTAGCCCA
TTACTTTGGCTACTGGCGTAGATATGCGGGACGAGCCAAGCGACACGAGG
TGTGGGTAGAGCGAATTCAGGCCTGGGGGGCAGCCAGACCGACGATGGTC
CGAGCTTTGGCCAGTCTTTGCCCATCGGCCCAAAAGCAGCTGGCATGGCA
GGCGTGGATGGCTTGGTATGGGCTGCGGATTCAAGCCCGAGAAGTGAGGA
AATATGGCGAAGTCCACCGTGCGCGGGGACAGGGCTTGATGTCCGTTCGA
CGGTTGCGGGAGCTGGTGCTGACGCGGAAGGAGAAGCGTGCCCGTGAGGA
GTTTAATGAAGGGCTTGCGGAGCATTTTAGGAAGGCCAAGGGGTTTTGTC
GCCTGAAGGATCGGTTGTGGGAGGAAAGGAGGGAACGACGGTTGATCAGG
AGACGAGAGATGGAGGCCCGGTCAGAGCGGGATAGGAGGGAATGTTTGCA
GGAAGCGTTTGGGCGATGGTCAGTGTATACAACCACGATGCAGCAGGCTA
TGGCGTGGTTTCATTCTCTCCCGCGGGAAGGTGAGCGGGAGGATAAGGAC
GGTCGCATAAGAAGGAGAAGAAGCATCAGCATCAGCAGCAGCAGCAGTGC
GGGCGGTGGTGAGAGCGGTTGTGGGAAAGATGAGCATGGAGATATCTTAC
TGCCCGAGACGGGAGATAGTTTCGACTGGACATCAAACGTCGTAGTGTAG
GTGAGGGAAGAACAAAGTGCATAGAGACAAGGAGACGAGACGGCGATGCT
CCTGCCGAAGAGCACTTCCAAACTTAGTGAGCGGAGAAACGTGGCAAGTG
TACAAACACAATATGTAATGCACGCAAAAGAACAAAAAAAAGACAAC

Coding sequence (CDS) from alignment at scaffold_3:1158992..1161738+

>mRNA_477 ID=mRNA_477|Name=jgi.p|Nanoce1779_2|577419|organism=Nannochloropsis oceanica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_3:1158992..1161738+ (Nannochloropsis oceanica)
ATGGAGCTTGAAGCGAGGAATTTGGCGAGGAAAACGTTGAAGGGGTGGTT
GCATGCGGCGGGGCGACAAGCAAGGGAGATGGAAGAGCTTTCGCAAGAGG
GCGGCGAGAAGAGGATGCGACGACGGCAAGCTGGAGCATTTCAACAATTA
AGGCTTTATGCCCAGCACCGGCATCTCGCCAAGATACTGCATGGTGTTGT
CTTGCTCAGAAAAGCAAGGCGGCGACTGGAAGAATGGAAGTCCTGTGCAC
GAGAACGAAGCAAGCGACGAGACCTAGTCATCCAGCACCAGCAGCAACGA
TATCGGTCCCTGGTTCTCGACTTCTTCTTCCGCTGGATACGGTACCATTT
GCTCCACCTTGCTTCCCAGCGAGTCCACACTCTAAACTATTCCAAGCTCG
CCCGCCAAGTGCTGCAAACCTTCCACCGCGCCCTACACATCTCCCGAAGC
GCTCAAGTGATCGCATGTCGGCGTCGGGCAAAATCACAAAGACAGTGCCT
CCAGTGGTGGACTGCAGCAGCAATGCACTTCCAAAAACGTCGACGCCTCT
ACATGGCACGAGGCCTCCGTCGCTGGCGCCTGGCAGTCGCTCAACAGCGA
CTGCAGCGTGGGATTGAGACAGGTCTAGGGGGAAAGGCCAGGAGGCGTAC
CATAGGCCGACGGGGGCTTGCAGCATTGCTCAAGTGGGCGGAGACTCGTC
GCTTAGGCGAAAGGCGGATTATTGCTGCCAGCGAGCAGAGGAGGCGGGCG
GAGGAACGACGATGCCATACAGCCTTGAGGGAATGGAGGGAGGGAAGTAA
GGAAAGGTACCACTGGCAGTGTCTGGAGGAAGATGCAGGGGATTGGGCGC
AGCGGCGGGGAAAGGCAGTGGGTCTGTTCGCGTTCACAAAATGTCATGGA
AGAAGGATGCTGGATGGGGACACACGGAAGATGGCCGAGTACTTTCATCG
GCAACGGCGACTACATCGGGGCCTGATGGTACTGCAGCGGCTGCGCTTGT
CGGCGGTGGTCCTTCCTGCTTTTCGTGAGCGTGCTATACGGAGGTGGTGC
TTACACCGAGAGTGGGGAAGATTGGTGGTGGGTCATACGCGCTGTGTGGG
AGATCGGCAGAGGCAGGAGCAGACAGCACTGCTGGCAGAGGGGCAGTGGG
AAACACGTCGACTCATTATTGCCGTGGGCCAGCTCGAACGAGCTCGGATC
TTGACTCGACGGGTGGAGGAGGTTCAACAACACAAGCACTCTCTGTTGGT
TCTTCAGTCTCTTCATATGTGGACACGTGAAACTCAAATAGCTCAAGGCC
TTCGTCGATTTCAGCGTCGATCCCAGGAGTGGCTACTGGCTGGAGTAATG
CGTGCGTGGGAGAGGTGGACCGCACAGCAGTCAGTGCGTCGGGCGGCGTT
GATAGAGGTGTCGCAGAAGGCACGTCGAGCCGAGTATTTTCATGCATGGC
GGGGGTCGATTCACCGGAGGAAGGAGCTGCAGATGCGGGCGAGGGAGGTG
ATGCAGTTGGTGGAGGAGGGGCTTCTACAGCGTGCGTGGATGTTTGGGTG
GAGGGTAGCGTATGAGGACGTTTGTCGGGAGCGACGCTCAGAGAGGCTGT
TTTTGCGGTATCGGGGATGGGAGCCCTGGCGACGATGGGTGCGAGAAAAG
AAGAAGGAGATAAAGAGAGTGGAGACGGTGCAGTCCTTAATGGCAACGCG
TTTGTTTCGTCTCAGTTTGGAAGGATGGGGGGAGGCATTTCGACTTGCAA
GAAGGGAGGAGGAAGCAGTTCAGATTATGGTTGAAAGGCGGGCAGTTCAA
GTCTTGCGACGATGGGATACACGAAGTGTACGTTTACGGCAGCAGAAAAT
ATGTGATGCGTATCATTTAGCCCATTACTTTGGCTACTGGCGTAGATATG
CGGGACGAGCCAAGCGACACGAGGTGTGGGTAGAGCGAATTCAGGCCTGG
GGGGCAGCCAGACCGACGATGGTCCGAGCTTTGGCCAGTCTTTGCCCATC
GGCCCAAAAGCAGCTGGCATGGCAGGCGTGGATGGCTTGGTATGGGCTGC
GGATTCAAGCCCGAGAAGTGAGGAAATATGGCGAAGTCCACCGTGCGCGG
GGACAGGGCTTGATGTCCGTTCGACGGTTGCGGGAGCTGGTGCTGACGCG
GAAGGAGAAGCGTGCCCGTGAGGAGTTTAATGAAGGGCTTGCGGAGCATT
TTAGGAAGGCCAAGGGGTTTTGTCGCCTGAAGGATCGGTTGTGGGAGGAA
AGGAGGGAACGACGGTTGATCAGGAGACGAGAGATGGAGGCCCGGTCAGA
GCGGGATAGGAGGGAATGTTTGCAGGAAGCGTTTGGGCGATGGTCAGTGT
ATACAACCACGATGCAGCAGGCTATGGCGTGGTTTCATTCTCTCCCGCGG
GAAGGTGAGCGGGAGGATAAGGACGGTCGCATAAGAAGGAGAAGAAGCAT
CAGCATCAGCAGCAGCAGCAGTGCGGGCGGTGGTGAGAGCGGTTGTGGGA
AAGATGAGCATGGAGATATCTTACTGCCCGAGACGGGAGATAGTTTCGAC
TGGACATCAAACGTCGTAGTGTAG

Synonyms

Publications