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Properties
| Property Name | Value |
|---|
| TranscriptId | 587919 |
| Track | FilteredModels2 |
| ProteinId | 587833 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:592816..596210 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4769 ID=mRNA_4769|Name=jgi.p|Nanoce1779_2|587833|organism=Nannochloropsis oceanica|type=mRNA|length=3107bp
GTATCCTCGTTCACCTTCTCCTGGCCTCCGCGGCCGCGGGACGATTTGTA
GTGCCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGTGGCTGC
CTTCCTACGGCCTCCACCACTTACCAATCCTTGTGCACGCACCGGCACTC
AAAGTGGCAGCAGCAGCAGTAGCAGCAGCATCGTCATGTCCGCCAGCAGC
GGCAACAAGAACGACAAAAATAAGAAGGCCAATCACAACAAAACCAGTGG
CCGCTTCAACCAGCTCCCCATTTTCAAGAGCAGCGTCACTAACCAAGTCG
AGGCCCGTTCCACCACCGCCACCAACATCAATATCACACCTCCTCACGTC
AGTAGCGGTAGCAGCAGCGACAGGAGTAGTAGCAACCTGATCAAGAACAT
CCCAATTCCTTCTCCCAGCAGCAAGAATACCGCTGCCTCCTCCTACGTCT
CCGGTGGAAAGGTCCCTGGCTATGTCGCAGATGCCAACAAGGCTATCGTT
GATACGATTAAAGGTGCTTTGTTCGCTTTGTATGGTGAGAGGCATTATGC
TCGTTTTCATGCCTTGGAGACCATTGCACGTGTTCCGTATTTTGCTTACA
CCTCAGTGTTGCATCTGTATGAGACATTGGGGTGGAGGAGGCGGTCGGAT
TTAATGAAGGTCCACTTCGCCGAGTCCTGGAACGAGTTGCATCACTTGCT
GATTATGGAAGAGCTGGGTGGGAATAAGGAATGGGGGGACAGAGTGGTTG
CGGTGCATCTGGCCTTCTTTTATTATTGGGTGGCGATTGCATTGTATATG
GCCTCGCCCGAGACGGCGTACAACCTGAACGAGCAGGTGGAGAGGCATGC
TTTCGATACGTACGACAAGTTTCTCGAGACGCACGAGGAGGAATTGAAGA
GCCTGCCCCCGCCCAAGGTGGCTAAGGAGTACTATCAGACAGGCGACCTC
TATATGTTTGATGAGTTCCACACCACCACCCCTGCCGAGCGGCGTCGGCC
CAAAATCGACACGTTGTACGATGTTTTTGTCAACATCCGCAACGATGAAC
GCGAGCATTTCATGACCATGGCGGAGATGCAAAAGGTCGGGGGGGACTTA
GGCATCACCTCACCGAACACCTTGAACCCACTTAACAACCCGAAGAGGGG
AATGTAAATGACAAAAGACATTAGGGGAAACGAAAGACGGTGAAGGTTCG
GTAGAAGTAGAGGAAGGGAGGGAGGGAGAGCGGGCGGGGAGCGCTTCCGT
TTGTCCTAGCATGTACAATTTTTGATTTAGGCCAGCCAGGGCGCAGCATC
TCGAGCGAACTATTGGTAGTATACCAAAGAAACAATGCGAGCGAGAAGTA
AAAATGAAAAGCCATGACTTGTAGTTTGTTTATGGGCCACGAGGGGATAA
GGGGAGGTTGGAAGGGTACTGGATGGCTCTTGTCGGCCTGCTTCGGCACG
CATTACGGAAAACACTCCCGGACGGTGCACTTCCAAGAAAACACAATTGC
CACGTCAAGCTATGCACGTGCGGCCTGCTATGGCATGCGCCATCAAAAGC
CCTTGTCGAGAGTGCACTCAAAAGAAACAAGTCCCGTCAAGTAACTCCAT
CTGCGCCTGCATCTGACACTACTACCGATATTATACACGCGTACCCTACA
TTCGCAGCGGCGTATGCATGCCGCTACGACGGGGTGGAGGAGGGGGTAGC
GATGACGACGTTGTATCAGAATCGGCGGCGGAAGGAACAAGACATCAAGA
CGACGACCTCCTCCCGTCGCCCCTTGCCTCCTCATCATCCTTCATGCGCA
GCACGCCCAAAGAAAATGACAATTCTGCCATGGCTCCATCAGTCACTGCC
CTAGACCTTAAGCAGCTGCAGTATGCCCTTCCTCTTGTCCTACCTACATC
CGCACGTGGCGAGCCAGTACGCCAACCGCAGAATCCCCAGCCTCCTCGAC
CGCCGGCCTTCCTATCCCCGCCTCCCTACTCTTCTTTTACCCTCAACCTC
ATGGCCGGTGGTGGAGCCGGTATAATAGAGACCATACTCACGTATCCCTT
GGACTTGGTGCGAACACGGTTTCAAATGGCGCGGAACGCTGACCTTACTA
GTAGCAGCAACAGCAGCATCATCACCAAACCGGATGCGCTCGGTCGCCCA
CCACGCTTTTCTCCAACCGTCGCCGGCATGCTCATGCAAATTTGTAGAGA
CGAAGGTTTCTTCCATCTGTATCGTGGTCTTCTGCCGCCCTTGCTGTCGG
AAGTGCCGAGGCGAGCTCTCAAATTCAGTGCGAATGATTTCTTCATAGAC
CTACTGCAACCGCCTTCGTCACAATCGGGTCCTTCCCCCAATAACAAGCG
TAAGTTCAATTTCTCGTGTGTGGATAAGGACAATTCTTTCACCTTCCTCC
TGGTTTTATATTTTTTGGAGTGAAATGTGTCTATTTATTTTCTCTTAATA
TTTTTTTTCCAGAAAGCATGTGCTTTCGTCCCGTCCCTTGTTTCTCCCTT
CCATCACTTGCCCCCCCTCTCTTTTTCTCAAGATAACAGCACCTGGTATC
TCCCGACAGCGTTTTCCTTCCATGGGCTGTTGCGGTCAAAGTTGTGTGCG
ATAGAAATGTTTCGAACTGTTTTTTTTAATTTTTGATTCTTTTTTCAAAA
AAATCAAATATAACATTTCGATTGGTACAGGTTTTTAGTTGGGCCGCCGA
CTTTTCCTATGAGACGGGGCCCTGGTACCTTCCAGACAATTTTTACCCTT
TTTCTATGCTTTATTTTTCGCGTTTATAACTCTGTAGTTGTTGTGTATGG
GGCGCGTGTATTTCATGGGTTGAGTGATCGATATTCTGACCATGATTACT
TATCTCCTTCCTTTCTTTCACCCATAGTCTCCATTACGCAGGCGACCCTC
GCCGGTATGCTCACCGGCCTGACTGAAACCTTTTTTCATACGCCTTTCGA
GCTCGTGAAGGTTCGACTTCAAACCCGAGAATTCGCGCACTGTTCTAACA
CCTACGCATGTGCCTTGGAAATATGGGGAAAAGAAGCAGCAGCAGCAGCA
GCAGCATCGGCAGGAGGAGCTAGAGGAGCAAGGGAGGCAAGACAGGGATT
AGGATGG back to topprotein sequence of jgi.p|Nanoce1779_2|587833 >mRNA_4769-protein ID=mRNA_4769-protein|Name=jgi.p|Nanoce1779_2|587833|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MSASSGNKNDKNKKANHNKTSGRFNQLPIFKSSVTNQVEARSTTATNINI
TPPHVSSGSSSDRSSSNLIKNIPIPSPSSKNTAASSYVSGGKVPGYVADA
NKAIVDTIKGALFALYGERHYARFHALETIARVPYFAYTSVLHLYETLGW
RRRSDLMKVHFAESWNELHHLLIMEELGGNKEWGDRVVAVHLAFFYYWVA
IALYMASPETAYNLNEQVERHAFDTYDKFLETHEEELKSLPPPKVAKEYY
QTGDLYMFDEFHTTTPAERRRPKIDTLYDVFVNIRNDEREHFMTMAEMQK
VGGDLGITSPNTLNPLNNPKRGM* back to topmRNA from alignment at scaffold_9:592816..596210- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4769 ID=mRNA_4769|Name=jgi.p|Nanoce1779_2|587833|organism=Nannochloropsis oceanica|type=mRNA|length=3395bp|location=Sequence derived from alignment at scaffold_9:592816..596210- (Nannochloropsis oceanica)
GTATCCTCGTTCACCTTCTCCTGGCCTCCGCGGCCGCGGGACGATTTGTA
GTGCCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGTGGCTGC
CTTCCTACGGCCTCCACCACTTACCAATCCTTGTGCACGCACCGGCACTC
AAAGTGGCAGCAGCAGCAGTAGCAGCAGCATCGTCATGTCCGCCAGCAGC
GGCAACAAGAACGACAAAAATAAGAAGGCCAATCACAACAAAACCAGTGG
CCGCTTCAACCAGCTCCCCATTTTCAAGAGCAGCGTCACTAACCAAGTCG
AGGCCCGTTCCACCACCGCCACCAACATCAATATCACACCTCCTCACGTC
AGTAGCGGTAGCAGCAGCGACAGGAGTAGTAGCAACCTGATCAAGAACAT
CCCAATTCCTTCTCCCAGCAGCAAGAATACCGCTGCCTCCTCCTACGTCT
CCGGTGGAAAGGTCCCTGGCTATGTCGCAGATGCCAACAAGGCTATCGTT
GATACGATTAAAGGTGCTTTGTTCGCTTTGTATGGTGAGAGGCATTATGC
TCGTTTTCATGCCTTGGAGACCATTGCACGTGTTCCGTATTTTGCTTACA
CCTCAGTGTTGCATCTGTATGAGACATTGGGGTGGAGGAGGCGGTCGGAT
TTAATGAAGGTCCACTTCGCCGAGTCCTGGAACGAGTTGCATCACTTGCT
GATTATGGAAGAGCTGGGTGGGAATAAGGAATGGGGGGACAGAGTGGTTG
CGGTGCATCTGGCCTTCTTTTATTATTGGGTGGCGATTGCATTGTATATG
GCCTCGCCCGAGACGGCGTACAACCTGAACGAGCAGGTACGGATAGGGGA
AGGGAGGGATGACGTTGAGGATTAGAAGGCATGGCTATGCATTGACATAT
TATGATCCACTTTTACTAAAACGCCTTTTCTTTATTACCCCTGTCTTTCC
TCCCTCTTTCCCTCGCTCGTTGTAGGTGGAGAGGCATGCTTTCGATACGT
ACGACAAGTTTCTCGAGACGCACGAGGAGGAATTGAAGAGCCTGCCCCCG
CCCAAGGTGGCTAAGGAGTACTATCAGACAGGTATTTGCGTGTGGGCTAA
GGGAATGTACCTGATCAGTTTGTGAGCCTGTGCTCGCAAGGAAATCAGAA
GCTGCCTACGCCTAACTCCTCCTCCATCGGTCTACTTACCCCCTTTCCTT
CCCTCCCCCCTTCCCTTCTTCCGACCACAGGCGACCTCTATATGTTTGAT
GAGTTCCACACCACCACCCCTGCCGAGCGGCGTCGGCCCAAAATCGACAC
GTTGTACGATGTTTTTGTCAACATCCGCAACGATGAACGCGAGCATTTCA
TGACCATGGCGGAGATGCAAAAGGTCGGGGGGGACTTAGGCATCACCTCA
CCGAACACCTTGAACCCACTTAACAACCCGAAGAGGGGAATGTAAATGAC
AAAAGACATTAGGGGAAACGAAAGACGGTGAAGGTTCGGTAGAAGTAGAG
GAAGGGAGGGAGGGAGAGCGGGCGGGGAGCGCTTCCGTTTGTCCTAGCAT
GTACAATTTTTGATTTAGGCCAGCCAGGGCGCAGCATCTCGAGCGAACTA
TTGGTAGTATACCAAAGAAACAATGCGAGCGAGAAGTAAAAATGAAAAGC
CATGACTTGTAGTTTGTTTATGGGCCACGAGGGGATAAGGGGAGGTTGGA
AGGGTACTGGATGGCTCTTGTCGGCCTGCTTCGGCACGCATTACGGAAAA
CACTCCCGGACGGTGCACTTCCAAGAAAACACAATTGCCACGTCAAGCTA
TGCACGTGCGGCCTGCTATGGCATGCGCCATCAAAAGCCCTTGTCGAGAG
TGCACTCAAAAGAAACAAGTCCCGTCAAGTAACTCCATCTGCGCCTGCAT
CTGACACTACTACCGATATTATACACGCGTACCCTACATTCGCAGCGGCG
TATGCATGCCGCTACGACGGGGTGGAGGAGGGGGTAGCGATGACGACGTT
GTATCAGAATCGGCGGCGGAAGGAACAAGACATCAAGACGACGACCTCCT
CCCGTCGCCCCTTGCCTCCTCATCATCCTTCATGCGCAGCACGCCCAAAG
AAAATGACAATTCTGCCATGGCTCCATCAGTCACTGCCCTAGACCTTAAG
CAGCTGCAGTATGCCCTTCCTCTTGTCCTACCTACATCCGCACGTGGCGA
GCCAGTACGCCAACCGCAGAATCCCCAGCCTCCTCGACCGCCGGCCTTCC
TATCCCCGCCTCCCTACTCTTCTTTTACCCTCAACCTCATGGCCGGTGGT
GGAGCCGGTATAATAGAGACCATACTCACGTATCCCTTGGACTTGGTGCG
AACACGGTTTCAAATGGCGCGGAACGCTGACCTTACTAGTAGCAGCAACA
GCAGCATCATCACCAAACCGGATGCGCTCGGTCGCCCACCACGCTTTTCT
CCAACCGTCGCCGGCATGCTCATGCAAATTTGTAGAGACGAAGGTTTCTT
CCATCTGTATCGTGGTCTTCTGCCGCCCTTGCTGTCGGAAGTGCCGAGGC
GAGCTCTCAAATTCAGTGCGAATGATTTCTTCATAGACCTACTGCAACCG
CCTTCGTCACAATCGGGTCCTTCCCCCAATAACAAGCGTAAGTTCAATTT
CTCGTGTGTGGATAAGGACAATTCTTTCACCTTCCTCCTGGTTTTATATT
TTTTGGAGTGAAATGTGTCTATTTATTTTCTCTTAATATTTTTTTTCCAG
AAAGCATGTGCTTTCGTCCCGTCCCTTGTTTCTCCCTTCCATCACTTGCC
CCCCCTCTCTTTTTCTCAAGATAACAGCACCTGGTATCTCCCGACAGCGT
TTTCCTTCCATGGGCTGTTGCGGTCAAAGTTGTGTGCGATAGAAATGTTT
CGAACTGTTTTTTTTAATTTTTGATTCTTTTTTCAAAAAAATCAAATATA
ACATTTCGATTGGTACAGGTTTTTAGTTGGGCCGCCGACTTTTCCTATGA
GACGGGGCCCTGGTACCTTCCAGACAATTTTTACCCTTTTTCTATGCTTT
ATTTTTCGCGTTTATAACTCTGTAGTTGTTGTGTATGGGGCGCGTGTATT
TCATGGGTTGAGTGATCGATATTCTGACCATGATTACTTATCTCCTTCCT
TTCTTTCACCCATAGTCTCCATTACGCAGGCGACCCTCGCCGGTATGCTC
ACCGGCCTGACTGAAACCTTTTTTCATACGCCTTTCGAGCTCGTGAAGGT
TCGACTTCAAACCCGAGAATTCGCGCACTGTTCTAACACCTACGCATGTG
CCTTGGAAATATGGGGAAAAGAAGCAGCAGCAGCAGCAGCAGCATCGGCA
GGAGGAGCTAGAGGAGCAAGGGAGGCAAGACAGGGATTAGGATGG back to topCoding sequence (CDS) from alignment at scaffold_9:592816..596210- >mRNA_4769 ID=mRNA_4769|Name=jgi.p|Nanoce1779_2|587833|organism=Nannochloropsis oceanica|type=CDS|length=2916bp|location=Sequence derived from alignment at scaffold_9:592816..596210- (Nannochloropsis oceanica)
GCGACCTCTATATGTTTGATGAGTTCCACACCACCACCCCTGCCGAGCGG
CGTCGGCCCAAAATCGACACGTTGTACGATGTTTTTGTCAACATCCGCAA
CGATGAACGCGAGCATTTCATGACCATGGCGGAGATGCAAAAGGTCGGGG
GGGACTTAGGCATCACCTCACCGAACACCTTGAACCCACTTAACAACCCG
AAGAGGGGAATGTAAGTGGAGAGGCATGCTTTCGATACGTACGACAAGTT
TCTCGAGACGCACGAGGAGGAATTGAAGAGCCTGCCCCCGCCCAAGGTGG
CTAAGGAGTACTATCAGACAGATGTCCGCCAGCAGCGGCAACAAGAACGA
CAAAAATAAGAAGGCCAATCACAACAAAACCAGTGGCCGCTTCAACCAGC
TCCCCATTTTCAAGAGCAGCGTCACTAACCAAGTCGAGGCCCGTTCCACC
ACCGCCACCAACATCAATATCACACCTCCTCACGTCAGTAGCGGTAGCAG
CAGCGACAGGAGTAGTAGCAACCTGATCAAGAACATCCCAATTCCTTCTC
CCAGCAGCAAGAATACCGCTGCCTCCTCCTACGTCTCCGGTGGAAAGGTC
CCTGGCTATGTCGCAGATGCCAACAAGGCTATCGTTGATACGATTAAAGG
TGCTTTGTTCGCTTTGTATGGTGAGAGGCATTATGCTCGTTTTCATGCCT
TGGAGACCATTGCACGTGTTCCGTATTTTGCTTACACCTCAGTGTTGCAT
CTGTATGAGACATTGGGGTGGAGGAGGCGGTCGGATTTAATGAAGGTCCA
CTTCGCCGAGTCCTGGAACGAGTTGCATCACTTGCTGATTATGGAAGAGC
TGGGTGGGAATAAGGAATGGGGGGACAGAGTGGTTGCGGTGCATCTGGCC
TTCTTTTATTATTGGGTGGCGATTGCATTGTATATGGCCTCGCCCGAGAC
GGCGTACAACCTGAACGAGCAGGCGACCTCTATATGTTTGATGAGTTCCA
CACCACCACCCCTGCCGAGCGGCGTCGGCCCAAAATCGACACGTTGTACG
ATGTTTTTGTCAACATCCGCAACGATGAACGCGAGCATTTCATGACCATG
GCGGAGATGCAAAAGGTCGGGGGGGACTTAGGCATCACCTCACCGAACAC
CTTGAACCCACTTAACAACCCGAAGAGGGGAATGTAAGTGGAGAGGCATG
CTTTCGATACGTACGACAAGTTTCTCGAGACGCACGAGGAGGAATTGAAG
AGCCTGCCCCCGCCCAAGGTGGCTAAGGAGTACTATCAGACAGATGTCCG
CCAGCAGCGGCAACAAGAACGACAAAAATAAGAAGGCCAATCACAACAAA
ACCAGTGGCCGCTTCAACCAGCTCCCCATTTTCAAGAGCAGCGTCACTAA
CCAAGTCGAGGCCCGTTCCACCACCGCCACCAACATCAATATCACACCTC
CTCACGTCAGTAGCGGTAGCAGCAGCGACAGGAGTAGTAGCAACCTGATC
AAGAACATCCCAATTCCTTCTCCCAGCAGCAAGAATACCGCTGCCTCCTC
CTACGTCTCCGGTGGAAAGGTCCCTGGCTATGTCGCAGATGCCAACAAGG
CTATCGTTGATACGATTAAAGGTGCTTTGTTCGCTTTGTATGGTGAGAGG
CATTATGCTCGTTTTCATGCCTTGGAGACCATTGCACGTGTTCCGTATTT
TGCTTACACCTCAGTGTTGCATCTGTATGAGACATTGGGGTGGAGGAGGC
GGTCGGATTTAATGAAGGTCCACTTCGCCGAGTCCTGGAACGAGTTGCAT
CACTTGCTGATTATGGAAGAGCTGGGTGGGAATAAGGAATGGGGGGACAG
AGTGGTTGCGGTGCATCTGGCCTTCTTTTATTATTGGGTGGCGATTGCAT
TGTATATGGCCTCGCCCGAGACGGCGTACAACCTGAACGAGCAGGCGACC
TCTATATGTTTGATGAGTTCCACACCACCACCCCTGCCGAGCGGCGTCGG
CCCAAAATCGACACGTTGTACGATGTTTTTGTCAACATCCGCAACGATGA
ACGCGAGCATTTCATGACCATGGCGGAGATGCAAAAGGTCGGGGGGGACT
TAGGCATCACCTCACCGAACACCTTGAACCCACTTAACAACCCGAAGAGG
GGAATGTAAGTGGAGAGGCATGCTTTCGATACGTACGACAAGTTTCTCGA
GACGCACGAGGAGGAATTGAAGAGCCTGCCCCCGCCCAAGGTGGCTAAGG
AGTACTATCAGACAGATGTCCGCCAGCAGCGGCAACAAGAACGACAAAAA
TAAGAAGGCCAATCACAACAAAACCAGTGGCCGCTTCAACCAGCTCCCCA
TTTTCAAGAGCAGCGTCACTAACCAAGTCGAGGCCCGTTCCACCACCGCC
ACCAACATCAATATCACACCTCCTCACGTCAGTAGCGGTAGCAGCAGCGA
CAGGAGTAGTAGCAACCTGATCAAGAACATCCCAATTCCTTCTCCCAGCA
GCAAGAATACCGCTGCCTCCTCCTACGTCTCCGGTGGAAAGGTCCCTGGC
TATGTCGCAGATGCCAACAAGGCTATCGTTGATACGATTAAAGGTGCTTT
GTTCGCTTTGTATGGTGAGAGGCATTATGCTCGTTTTCATGCCTTGGAGA
CCATTGCACGTGTTCCGTATTTTGCTTACACCTCAGTGTTGCATCTGTAT
GAGACATTGGGGTGGAGGAGGCGGTCGGATTTAATGAAGGTCCACTTCGC
CGAGTCCTGGAACGAGTTGCATCACTTGCTGATTATGGAAGAGCTGGGTG
GGAATAAGGAATGGGGGGACAGAGTGGTTGCGGTGCATCTGGCCTTCTTT
TATTATTGGGTGGCGATTGCATTGTATATGGCCTCGCCCGAGACGGCGTA
CAACCTGAACGAGCAG back to top
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