jgi.p|Nanoce1779_2|587825, mRNA_4765 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587825
Unique Name	mRNA_4765
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2741
Alignment location	scaffold_9:584579..587319 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587911
Track	FilteredModels2
ProteinId	587825

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:584579..587319 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587825	gene_4765	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587825	mRNA_4765-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4765	CDS_4765	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:584579..587319-
coding sequence from alignment at scaffold_9:584579..587319-

mRNA sequence

>mRNA_4765 ID=mRNA_4765|Name=jgi.p|Nanoce1779_2|587825|organism=Nannochloropsis oceanica|type=mRNA|length=2741bp
CCGTGGAATCACCCCTTTTCCAGCAGCAACAGCATCAGCAGCAGCACAAA
CAGCTACAGCGGCAGCAGCTCCGCTTTTCCTCATTCTGGCTTGACCCCAC
CAGGACGACGCCGTTAGAGGAATGGTGCATTACGGAGGAGCATCCCGGCA
TTCCATCCGCAATGCAAAACATACGGGGAAATGACAAAAGGGAGGATCAA
GTTGAGGCCTTGAAGGAGGAGGACTGGAAAGGCCGTTCGATCGGTGGAGC
CGCCCCGCTCCACGAAGGCATAGCACGCGCAGAGGCAAGCCAAGCGACCG
AGGATATGGTAGTGGAGGCGGTATCGACGAACGAGGAGTCTGGCGAAAAA
AACGCAGTGAACAACAAGAATAAAAACAGGGGTTTCAATGTCTTCAAAGC
CATCAGTGGGGGAGGGACCGAGGGCTGTCACCGAAGGACCCACCCTGGCT
TCTTCGGCAAGAGCAAGTCCAGTAGAGTCGGTAGCAGCAGCCTCCGACCT
TGTAACCCCAGCACAAGTAATACCCGGTCAATGGGCATGACTGTAGTGGC
CAGCGCGTCCGCCTCCTCGTCCTCCTCCTCCTCCTCTCCATCGACCACCA
CCTCCTCCTTCCTCACTACCCTCCGAAACGCTGCGACGGTCTCCGGCACC
ACCAGCAGCGCAAGGAGCAGTAGTGGCACGGACGTCATGGACAATTCTCT
CGTTGCTGCTAGCCAACAGCCCCAGAATTCTGATACCAATATGCAAGTGC
TCATAAACCTGATGGCTTCGGACGAATTCAAGCGATTATTGGTTTGGTTT
TCCTTCTTAGGGCTCGGATGGAAGCTGCGGTCCTTCTACGGTATAATTTT
AGGGACATTCGTTTTGTCTTACATTGGGTCGTCGGCGGTGAGGTGGAGTG
AGAAGAAAGGGAATGAGATAATAAAACGTTTGAAACTCCCCGCACTCCCG
AGACGATTCTGGGCCTGCGCGTACATTGTGTTGGTGTTGAGCAGCTTTGT
AAGTTTAACGGTAGTGACGGTGCCGCGGGTGGTGGGGGAGACGAACTACT
TGGCCCTGCTGGTTGAGAGTGAGAACCCGTATTTTTTCGTGGCAGATGGA
ATCAGAGGGTTTCTAGGCCCCGACGTGTCAGGGAAATTGGAGGCTTTCTT
GCTGTCTGTGACAGGGGAGGAAGGACGGGCGTTTGCGAGTGGGGTGTTAT
CGGCTTCGTCCTCATCTTCGAGTGCTGGTGGTTTGGGAGGATCGGGGTCG
TTGTCGGCAGCGGCGGCGGCGACCATGGCGAGGAAGGGTTTGGGGCAGCA
GGCGGGCGAGTTGTCATCTGGAGCATGGACAGCTGTGAGGAAGGGGAGGT
TTGCCAAGTTGATGGAGTATTCCTTGAAGGGATATATTAAACAGGCCTAC
TACGTCATCCAAAAGCTGTTGACAAGTAGCACGAAACTGGTCTACAAAGG
CGTCTTGTCTCTTTTGTTCTCCTTCATGATTATATGGGACCTGCCACGCC
TTGCAAAGGGGACGCAAAGATTGGGAAAGAGTCGATTTGGCTTTGCGTAC
AACGTGCTAGCGCCTCAGGTGGCGGCTTTCGGGCGGCTGGTTGGCCAGAG
TTTTGAGGTACAAAGTGTGATTGCCTTGGTAAATACGCTGTTGACGACTT
TAGGGTTGATTTTGTTGAAGATTCCTGGGTACGGGTTTATGAGCTTGGTG
GTATTGATTACGAGCTTTATCCCCGTGTTTGGGGTCTTCCTCAGTACGTT
TCCAATGGCATTGGTGGCGGTGAGTGAGTACGGTGTGGGGAAGATGATTG
ATGTGATCCTGATGGTGATTGGGATTCACGTCGTGGAGGCTTATTGCCTC
AGTCCCTTGATCTACTCGGCCACGGTCAAATTACATCCGGTGTTGATCGT
GAGTGCTTTGTATGTGATGGAGCATTTGGCGGGGTTGCAGGGGGTATTCT
TGGCCGTGCCGGTGACCATGTTTGTAATTCGGCAGGTTTTGGGGATTCCG
GCGGGGAAGGGAGGAGGGGGCCACGGTGGTCATGGAGGAGGGAAGGCGCA
TGATGAGCAGGAGGGGCAGGATGTGAGGGAAGAAGAGATGGCGATGGGCT
TGGCGCAAGGATAGGTACGTATGTGGTGAGTGAATCGAGCGATAGAGGTG
GGAGGGACTAATCGTGAGAAGGGGTGTAGATCTAGGTGCGACAAGGCCTG
CTATAACGGGCAAGGCGTAAGAGGCAAAGGCGAGGAGGAAGGCATGTACC
GGTGGTGCTAATGTAAAGAGAGAGGACCTATAGGTGCGAAGGGATTGAAG
AGACAGAATCTAGGGGAAATGGTAATCGGAGCTCAGGGAAAGCTTGTGCG
TCGTGTCTGTGTCAGTCGTTGTGTAAGCTTATGTGAGAGGGAAATTGAGA
GAGTGTTTGAGTGTATGTAAGTCAGTCCTGTGGTTATAAAAACAAGGGAC
AAGAAGAATAAGCATGGGAAGCGAGCGGTTAATGCGTGGAGATGTAATGA
TACTTGACGGGCGATTGCGGAGGATAGCAAAGGAAAAGAGGGACTAGATA
GAAGAAACGAGAGGTAAATACAATACCCGGGAAATGACATATGCGTCCCC
CAGTCCCCGCGATCACCCACATATACTGAGGAAATAGTGGTGGCTTGACG
CTGCCGCGACAATCCTCCATTCACAAATAAAAGATAAAACAGGCAGGTGT
CCTACGAGGGAAACGAAAAAGTCAACCTGTTTTACCACGAC

protein sequence of jgi.p|Nanoce1779_2|587825

>mRNA_4765-protein ID=mRNA_4765-protein|Name=jgi.p|Nanoce1779_2|587825|organism=Nannochloropsis oceanica|type=polypeptide|length=651bp
MQNIRGNDKREDQVEALKEEDWKGRSIGGAAPLHEGIARAEASQATEDMV
VEAVSTNEESGEKNAVNNKNKNRGFNVFKAISGGGTEGCHRRTHPGFFGK
SKSSRVGSSSLRPCNPSTSNTRSMGMTVVASASASSSSSSSSPSTTTSSF
LTTLRNAATVSGTTSSARSSSGTDVMDNSLVAASQQPQNSDTNMQVLINL
MASDEFKRLLVWFSFLGLGWKLRSFYGIILGTFVLSYIGSSAVRWSEKKG
NEIIKRLKLPALPRRFWACAYIVLVLSSFVSLTVVTVPRVVGETNYLALL
VESENPYFFVADGIRGFLGPDVSGKLEAFLLSVTGEEGRAFASGVLSASS
SSSSAGGLGGSGSLSAAAAATMARKGLGQQAGELSSGAWTAVRKGRFAKL
MEYSLKGYIKQAYYVIQKLLTSSTKLVYKGVLSLLFSFMIIWDLPRLAKG
TQRLGKSRFGFAYNVLAPQVAAFGRLVGQSFEVQSVIALVNTLLTTLGLI
LLKIPGYGFMSLVVLITSFIPVFGVFLSTFPMALVAVSEYGVGKMIDVIL
MVIGIHVVEAYCLSPLIYSATVKLHPVLIVSALYVMEHLAGLQGVFLAVP
VTMFVIRQVLGIPAGKGGGGHGGHGGGKAHDEQEGQDVREEEMAMGLAQG
*

mRNA from alignment at scaffold_9:584579..587319-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4765 ID=mRNA_4765|Name=jgi.p|Nanoce1779_2|587825|organism=Nannochloropsis oceanica|type=mRNA|length=2741bp|location=Sequence derived from alignment at scaffold_9:584579..587319- (Nannochloropsis oceanica)
CCGTGGAATCACCCCTTTTCCAGCAGCAACAGCATCAGCAGCAGCACAAA
CAGCTACAGCGGCAGCAGCTCCGCTTTTCCTCATTCTGGCTTGACCCCAC
CAGGACGACGCCGTTAGAGGAATGGTGCATTACGGAGGAGCATCCCGGCA
TTCCATCCGCAATGCAAAACATACGGGGAAATGACAAAAGGGAGGATCAA
GTTGAGGCCTTGAAGGAGGAGGACTGGAAAGGCCGTTCGATCGGTGGAGC
CGCCCCGCTCCACGAAGGCATAGCACGCGCAGAGGCAAGCCAAGCGACCG
AGGATATGGTAGTGGAGGCGGTATCGACGAACGAGGAGTCTGGCGAAAAA
AACGCAGTGAACAACAAGAATAAAAACAGGGGTTTCAATGTCTTCAAAGC
CATCAGTGGGGGAGGGACCGAGGGCTGTCACCGAAGGACCCACCCTGGCT
TCTTCGGCAAGAGCAAGTCCAGTAGAGTCGGTAGCAGCAGCCTCCGACCT
TGTAACCCCAGCACAAGTAATACCCGGTCAATGGGCATGACTGTAGTGGC
CAGCGCGTCCGCCTCCTCGTCCTCCTCCTCCTCCTCTCCATCGACCACCA
CCTCCTCCTTCCTCACTACCCTCCGAAACGCTGCGACGGTCTCCGGCACC
ACCAGCAGCGCAAGGAGCAGTAGTGGCACGGACGTCATGGACAATTCTCT
CGTTGCTGCTAGCCAACAGCCCCAGAATTCTGATACCAATATGCAAGTGC
TCATAAACCTGATGGCTTCGGACGAATTCAAGCGATTATTGGTTTGGTTT
TCCTTCTTAGGGCTCGGATGGAAGCTGCGGTCCTTCTACGGTATAATTTT
AGGGACATTCGTTTTGTCTTACATTGGGTCGTCGGCGGTGAGGTGGAGTG
AGAAGAAAGGGAATGAGATAATAAAACGTTTGAAACTCCCCGCACTCCCG
AGACGATTCTGGGCCTGCGCGTACATTGTGTTGGTGTTGAGCAGCTTTGT
AAGTTTAACGGTAGTGACGGTGCCGCGGGTGGTGGGGGAGACGAACTACT
TGGCCCTGCTGGTTGAGAGTGAGAACCCGTATTTTTTCGTGGCAGATGGA
ATCAGAGGGTTTCTAGGCCCCGACGTGTCAGGGAAATTGGAGGCTTTCTT
GCTGTCTGTGACAGGGGAGGAAGGACGGGCGTTTGCGAGTGGGGTGTTAT
CGGCTTCGTCCTCATCTTCGAGTGCTGGTGGTTTGGGAGGATCGGGGTCG
TTGTCGGCAGCGGCGGCGGCGACCATGGCGAGGAAGGGTTTGGGGCAGCA
GGCGGGCGAGTTGTCATCTGGAGCATGGACAGCTGTGAGGAAGGGGAGGT
TTGCCAAGTTGATGGAGTATTCCTTGAAGGGATATATTAAACAGGCCTAC
TACGTCATCCAAAAGCTGTTGACAAGTAGCACGAAACTGGTCTACAAAGG
CGTCTTGTCTCTTTTGTTCTCCTTCATGATTATATGGGACCTGCCACGCC
TTGCAAAGGGGACGCAAAGATTGGGAAAGAGTCGATTTGGCTTTGCGTAC
AACGTGCTAGCGCCTCAGGTGGCGGCTTTCGGGCGGCTGGTTGGCCAGAG
TTTTGAGGTACAAAGTGTGATTGCCTTGGTAAATACGCTGTTGACGACTT
TAGGGTTGATTTTGTTGAAGATTCCTGGGTACGGGTTTATGAGCTTGGTG
GTATTGATTACGAGCTTTATCCCCGTGTTTGGGGTCTTCCTCAGTACGTT
TCCAATGGCATTGGTGGCGGTGAGTGAGTACGGTGTGGGGAAGATGATTG
ATGTGATCCTGATGGTGATTGGGATTCACGTCGTGGAGGCTTATTGCCTC
AGTCCCTTGATCTACTCGGCCACGGTCAAATTACATCCGGTGTTGATCGT
GAGTGCTTTGTATGTGATGGAGCATTTGGCGGGGTTGCAGGGGGTATTCT
TGGCCGTGCCGGTGACCATGTTTGTAATTCGGCAGGTTTTGGGGATTCCG
GCGGGGAAGGGAGGAGGGGGCCACGGTGGTCATGGAGGAGGGAAGGCGCA
TGATGAGCAGGAGGGGCAGGATGTGAGGGAAGAAGAGATGGCGATGGGCT
TGGCGCAAGGATAGGTACGTATGTGGTGAGTGAATCGAGCGATAGAGGTG
GGAGGGACTAATCGTGAGAAGGGGTGTAGATCTAGGTGCGACAAGGCCTG
CTATAACGGGCAAGGCGTAAGAGGCAAAGGCGAGGAGGAAGGCATGTACC
GGTGGTGCTAATGTAAAGAGAGAGGACCTATAGGTGCGAAGGGATTGAAG
AGACAGAATCTAGGGGAAATGGTAATCGGAGCTCAGGGAAAGCTTGTGCG
TCGTGTCTGTGTCAGTCGTTGTGTAAGCTTATGTGAGAGGGAAATTGAGA
GAGTGTTTGAGTGTATGTAAGTCAGTCCTGTGGTTATAAAAACAAGGGAC
AAGAAGAATAAGCATGGGAAGCGAGCGGTTAATGCGTGGAGATGTAATGA
TACTTGACGGGCGATTGCGGAGGATAGCAAAGGAAAAGAGGGACTAGATA
GAAGAAACGAGAGGTAAATACAATACCCGGGAAATGACATATGCGTCCCC
CAGTCCCCGCGATCACCCACATATACTGAGGAAATAGTGGTGGCTTGACG
CTGCCGCGACAATCCTCCATTCACAAATAAAAGATAAAACAGGCAGGTGT
CCTACGAGGGAAACGAAAAAGTCAACCTGTTTTACCACGAC

Coding sequence (CDS) from alignment at scaffold_9:584579..587319-

>mRNA_4765 ID=mRNA_4765|Name=jgi.p|Nanoce1779_2|587825|organism=Nannochloropsis oceanica|type=CDS|length=1953bp|location=Sequence derived from alignment at scaffold_9:584579..587319- (Nannochloropsis oceanica)
ATGCAAAACATACGGGGAAATGACAAAAGGGAGGATCAAGTTGAGGCCTT
GAAGGAGGAGGACTGGAAAGGCCGTTCGATCGGTGGAGCCGCCCCGCTCC
ACGAAGGCATAGCACGCGCAGAGGCAAGCCAAGCGACCGAGGATATGGTA
GTGGAGGCGGTATCGACGAACGAGGAGTCTGGCGAAAAAAACGCAGTGAA
CAACAAGAATAAAAACAGGGGTTTCAATGTCTTCAAAGCCATCAGTGGGG
GAGGGACCGAGGGCTGTCACCGAAGGACCCACCCTGGCTTCTTCGGCAAG
AGCAAGTCCAGTAGAGTCGGTAGCAGCAGCCTCCGACCTTGTAACCCCAG
CACAAGTAATACCCGGTCAATGGGCATGACTGTAGTGGCCAGCGCGTCCG
CCTCCTCGTCCTCCTCCTCCTCCTCTCCATCGACCACCACCTCCTCCTTC
CTCACTACCCTCCGAAACGCTGCGACGGTCTCCGGCACCACCAGCAGCGC
AAGGAGCAGTAGTGGCACGGACGTCATGGACAATTCTCTCGTTGCTGCTA
GCCAACAGCCCCAGAATTCTGATACCAATATGCAAGTGCTCATAAACCTG
ATGGCTTCGGACGAATTCAAGCGATTATTGGTTTGGTTTTCCTTCTTAGG
GCTCGGATGGAAGCTGCGGTCCTTCTACGGTATAATTTTAGGGACATTCG
TTTTGTCTTACATTGGGTCGTCGGCGGTGAGGTGGAGTGAGAAGAAAGGG
AATGAGATAATAAAACGTTTGAAACTCCCCGCACTCCCGAGACGATTCTG
GGCCTGCGCGTACATTGTGTTGGTGTTGAGCAGCTTTGTAAGTTTAACGG
TAGTGACGGTGCCGCGGGTGGTGGGGGAGACGAACTACTTGGCCCTGCTG
GTTGAGAGTGAGAACCCGTATTTTTTCGTGGCAGATGGAATCAGAGGGTT
TCTAGGCCCCGACGTGTCAGGGAAATTGGAGGCTTTCTTGCTGTCTGTGA
CAGGGGAGGAAGGACGGGCGTTTGCGAGTGGGGTGTTATCGGCTTCGTCC
TCATCTTCGAGTGCTGGTGGTTTGGGAGGATCGGGGTCGTTGTCGGCAGC
GGCGGCGGCGACCATGGCGAGGAAGGGTTTGGGGCAGCAGGCGGGCGAGT
TGTCATCTGGAGCATGGACAGCTGTGAGGAAGGGGAGGTTTGCCAAGTTG
ATGGAGTATTCCTTGAAGGGATATATTAAACAGGCCTACTACGTCATCCA
AAAGCTGTTGACAAGTAGCACGAAACTGGTCTACAAAGGCGTCTTGTCTC
TTTTGTTCTCCTTCATGATTATATGGGACCTGCCACGCCTTGCAAAGGGG
ACGCAAAGATTGGGAAAGAGTCGATTTGGCTTTGCGTACAACGTGCTAGC
GCCTCAGGTGGCGGCTTTCGGGCGGCTGGTTGGCCAGAGTTTTGAGGTAC
AAAGTGTGATTGCCTTGGTAAATACGCTGTTGACGACTTTAGGGTTGATT
TTGTTGAAGATTCCTGGGTACGGGTTTATGAGCTTGGTGGTATTGATTAC
GAGCTTTATCCCCGTGTTTGGGGTCTTCCTCAGTACGTTTCCAATGGCAT
TGGTGGCGGTGAGTGAGTACGGTGTGGGGAAGATGATTGATGTGATCCTG
ATGGTGATTGGGATTCACGTCGTGGAGGCTTATTGCCTCAGTCCCTTGAT
CTACTCGGCCACGGTCAAATTACATCCGGTGTTGATCGTGAGTGCTTTGT
ATGTGATGGAGCATTTGGCGGGGTTGCAGGGGGTATTCTTGGCCGTGCCG
GTGACCATGTTTGTAATTCGGCAGGTTTTGGGGATTCCGGCGGGGAAGGG
AGGAGGGGGCCACGGTGGTCATGGAGGAGGGAAGGCGCATGATGAGCAGG
AGGGGCAGGATGTGAGGGAAGAAGAGATGGCGATGGGCTTGGCGCAAGGA
TAG

Synonyms

Publications