jgi.p|Nanoce1779_2|587822, mRNA_4764 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587822
Unique Name	mRNA_4764
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1500
Alignment location	scaffold_9:582934..584556 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587908
Track	FilteredModels2
ProteinId	587822

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:582934..584556 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587822	gene_4764	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587822	mRNA_4764-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4764	CDS_4764	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:582934..584556+
coding sequence from alignment at scaffold_9:582934..584556+

mRNA sequence

>mRNA_4764 ID=mRNA_4764|Name=jgi.p|Nanoce1779_2|587822|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp
CAGGTCGCTTCCCGTGGCAGAGGGCCCGTGGTTTGCTGAGTTCCCTTACC
CAGTACCATTAATTGTTCTTCCAGGCGACATCCGCATCTTCCCCCCCTCA
TGTCAATCATCGCCACCAGCAGCGCCATCTCTACAGCACCCACAAGCGCA
AAAACATGTTCAGGCACATCCCCAAAGAGAAAGAGCAACAATCGCCCCCG
CTCCTTCGTTGGCGTCCTCTCTCTCCTCCTCTTCATCCTCGCCCTCCAAC
TTCGCAGCGTCCACGCAGAATCCTGCGCCTCGTTCACCGACTGCTTCACG
TGCAGCAATAGCAGCTTCTCCTGTCATTGGTGTGGAGCAGACAACAAATG
TCACACCATCGGCTCTCCTTACGGCTGCTTGACAGGCGTCAACTGCTATA
CAAGCAAAGCATGCGTCCGCTCTGAGCCTCAACCCATGCCCCATCCTACC
CCTTCTGGCTCGGTGTTGGTGGGGTTAGGCGTCTTCCTCCTATCCTCACT
CCTTTGCACAAGTGCTTGTTTTTTTGTGGCAAATGAGTACGTGCATCACG
CTACGGTGGTCCGCGTGGAGAAAGATCCAAATTACCAGGAATTGCGGGCG
TTTGATGACGAGGAGGAGGAGGGAGGGAGTGAAGGAGCATGGGGCGGAGC
TCGACGAGGGCCTGGAAGGGGCAGCAGCCCCATCGATAGCGTCTATGTAC
GAGGAGGAGGCATCGAGAGCGATATATGGGACCCTATCCCGAGAATAACA
GTGATTGAACGCTCTCGGTTTTTGATAATATTTTCAAAGCTCATTCGAGC
CATGCTTGTTCTGGCCGTGGGGTGGCTAGTGCTGGTGGCAGTGGCTGTGT
TGCTGTATACTCCACAGATGCCCGATGTGAATGTGTGTAATACGGCCTTG
GATTGGGGCTCGATCTTCTCGGGCTTCGAAAAGTTGAAACTGGAGGCCGA
CTATCAATTATTGCTGTCCGTTTACAACCCTAACAGGCTCGACGTCGCCA
TCACTTCAGGGCAAGGCGTCTTTAAGCACGACCATGAGCCAATCGGGCAA
GTCGAAATCTCCCCCTTTGTAATCAAAGGTGGGGCAATCACTGATGTTCT
TGTCACTTTAGTCTTCACCCCTTCCGTGTGGAAAAGCCTCCAATTAGACT
TGGCCTTTCAAACAGGCTCGTTAATGGTTATGGTGGATGTAAATGTTGCC
GGTAGAGTGATATGGAAGAAGAGAAGGTTGTTTCCATTCGCCTACAATCT
ACAGAACTATTTTATTCATGTGGGTACGGAGACGACGAGTGGTCCCAGAC
ATTTGTGTAATTGTACGGCTTGGTAGCACGTAAGCGTGGGTTGGAAGGGA
GGAGGGGAGGAGGGGATGTGATATATTTCGACATGTACAGAAGGAAAAGA
AGACATACATAAAGCAACAATAGAAATGGTGTGAAGAGAGGCGCTCAAAT
TCTGGCTAGGATTTTTTTAAAGTAAGACGAAAAATCGGTGAACAGAAACA

protein sequence of jgi.p|Nanoce1779_2|587822

>mRNA_4764-protein ID=mRNA_4764-protein|Name=jgi.p|Nanoce1779_2|587822|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MSIIATSSAISTAPTSAKTCSGTSPKRKSNNRPRSFVGVLSLLLFILALQ
LRSVHAESCASFTDCFTCSNSSFSCHWCGADNKCHTIGSPYGCLTGVNCY
TSKACVRSEPQPMPHPTPSGSVLVGLGVFLLSSLLCTSACFFVANEYVHH
ATVVRVEKDPNYQELRAFDDEEEEGGSEGAWGGARRGPGRGSSPIDSVYV
RGGGIESDIWDPIPRITVIERSRFLIIFSKLIRAMLVLAVGWLVLVAVAV
LLYTPQMPDVNVCNTALDWGSIFSGFEKLKLEADYQLLLSVYNPNRLDVA
ITSGQGVFKHDHEPIGQVEISPFVIKGGAITDVLVTLVFTPSVWKSLQLD
LAFQTGSLMVMVDVNVAGRVIWKKRRLFPFAYNLQNYFIHVGTETTSGPR
HLCNCTAW*

mRNA from alignment at scaffold_9:582934..584556+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4764 ID=mRNA_4764|Name=jgi.p|Nanoce1779_2|587822|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp|location=Sequence derived from alignment at scaffold_9:582934..584556+ (Nannochloropsis oceanica)
CAGGTCGCTTCCCGTGGCAGAGGGCCCGTGGTTTGCTGAGTTCCCTTACC
CAGTACCATTAATTGTTCTTCCAGGCGACATCCGCATCTTCCCCCCCTCA
TGTCAATCATCGCCACCAGCAGCGCCATCTCTACAGCACCCACAAGCGCA
AAAACATGTTCAGGCACATCCCCAAAGAGAAAGAGCAACAATCGCCCCCG
CTCCTTCGTTGGCGTCCTCTCTCTCCTCCTCTTCATCCTCGCCCTCCAAC
TTCGCAGCGTCCACGCAGAATCCTGCGCCTCGTTCACCGACTGCTTCACG
TGCAGCAATAGCAGCTTCTCCTGTCATTGGTGTGGAGCAGACAACAAATG
TCACACCATCGGCTCTCCTTACGGCTGCTTGACAGGCGTCAACTGCTATA
CAAGCAAAGCATGCGTCCGCTCTGAGCCTCAACCCATGCCCCATCCTACC
CCTTCTGGCTCGGTGTTGGTGGGGTTAGGCGTCTTCCTCCTATCCTCACT
CCTTTGCACAAGTGCTTGTTTTTTTGTGGCAAATGAGTACGTGCATCACG
CTACGGTGGTCCGCGTGGAGAAAGATCCAAATTACCAGGAATTGCGGGCG
TTTGATGACGAGGAGGAGGAGGGAGGGAGTGAAGGAGCATGGGGCGGAGC
TCGACGAGGGCCTGGAAGGGGCAGCAGCCCCATCGATAGCGTCTATGTAC
GAGGAGGAGGCATCGAGAGCGATATATGGGACCCTATCCCGAGAATAACA
GTGATTGAACGCTCTCGGTTTTTGATAATATTTTCAAAGCTCATTCGAGC
CATGCTTGTTCTGGCCGTGGGGTGGCTAGTGCTGGTGGCAGTGGCTGTGT
TGCTGTATACTCCACAGATGCCCGATGTGAATGTGTGTAATACGGCCTTG
GATTGGGGCTCGATCTTCTCGGGCTTCGAAAAGTTGAAACTGGAGGCCGA
CTATCAATTATTGCTGTCCGTGTAAGTATTTTTTTTATTGATTATTCAAC
TAACTAACGAATTAACAAATTGATTGCCCTAGTTGATCATTAGTTCATTC
ATGTCTGAACTGATTGTTCCTCTATTCCTCTCTCTCGCCCTCAGTTACAA
CCCTAACAGGCTCGACGTCGCCATCACTTCAGGGCAAGGCGTCTTTAAGC
ACGACCATGAGCCAATCGGGCAAGTCGAAATCTCCCCCTTTGTAATCAAA
GGTGGGGCAATCACTGATGTTCTTGTCACTTTAGTCTTCACCCCTTCCGT
GTGGAAAAGCCTCCAATTAGACTTGGCCTTTCAAACAGGCTCGTTAATGG
TTATGGTGGATGTAAATGTTGCCGGTAGAGTGATATGGAAGAAGAGAAGG
TTGTTTCCATTCGCCTACAATCTACAGAACTATTTTATTCATGTGGGTAC
GGAGACGACGAGTGGTCCCAGACATTTGTGTAATTGTACGGCTTGGTAGC
ACGTAAGCGTGGGTTGGAAGGGAGGAGGGGAGGAGGGGATGTGATATATT
TCGACATGTACAGAAGGAAAAGAAGACATACATAAAGCAACAATAGAAAT
GGTGTGAAGAGAGGCGCTCAAATTCTGGCTAGGATTTTTTTAAAGTAAGA
CGAAAAATCGGTGAACAGAAACA

Coding sequence (CDS) from alignment at scaffold_9:582934..584556+

>mRNA_4764 ID=mRNA_4764|Name=jgi.p|Nanoce1779_2|587822|organism=Nannochloropsis oceanica|type=CDS|length=2454bp|location=Sequence derived from alignment at scaffold_9:582934..584556+ (Nannochloropsis oceanica)
ATGTCAATCATCGCCACCAGCAGCGCCATCTCTACAGCACCCACAAGCGC
AAAAACATGTTCAGGCACATCCCCAAAGAGAAAGAGCAACAATCGCCCCC
GCTCCTTCGTTGGCGTCCTCTCTCTCCTCCTCTTCATCCTCGCCCTCCAA
CTTCGCAGCGTCCACGCAGAATCCTGCGCCTCGTTCACCGACTGCTTCAC
GTGCAGCAATAGCAGCTTCTCCTGTCATTGGTGTGGAGCAGACAACAAAT
GTCACACCATCGGCTCTCCTTACGGCTGCTTGACAGGCGTCAACTGCTAT
ACAAGCAAAGCATGCGTCCGCTCTGAGCCTCAACCCATGCCCCATCCTAC
CCCTTCTGGCTCGGTGTTGGTGGGGTTAGGCGTCTTCCTCCTATCCTCAC
TCCTTTGCACAAGTGCTTGTTTTTTTGTGGCAAATGAGTACGTGCATCAC
GCTACGGTGGTCCGCGTGGAGAAAGATCCAAATTACCAGGAATTGCGGGC
GTTTGATGACGAGGAGGAGGAGGGAGGGAGTGAAGGAGCATGGGGCGGAG
CTCGACGAGGGCCTGGAAGGGGCAGCAGCCCCATCGATAGCGTCTATGTA
CGAGGAGGAGGCATCGAGAGCGATATATGGGACCCTATCCCGAGAATAAC
AGTGATTGAACGCTCTCGGTTTTTGATAATATTTTCAAAGCTCATTCGAG
CCATGCTTGTTCTGGCCGTGGGGTGGCTAGTGCTGGTGGCAGTGGCTGTG
TTGCTGTATACTCCACAGATGCCCGATGTGAATGTGTGTAATACGGCCTT
GGATTGGGGCTCGATCTTCTCGGGCTTCGAAAAGTTGAAACTGGAGGCCG
ACTATCAATTATTGCTGTCCGTTTACAACCCTAACAGGCTCGACGTCGCC
ATCACTTCAGGGCAAGGCGTCTTTAAGCACGACCATGAGCCAATCGGGCA
AGTCGAAATCTCCCCCTTTGTAATCAAAGGTGGGGCAATCACTGATGTTC
TTGTCACTTTAGTCTTCACCCCTTCCGTGTGGAAAAGCCTCCAATTAGAC
TTGGCCTTTCAAACAGGCTCGTTAATGGTTATGGTGGATGTAAATGTTGC
CGGTAGAGTGATATGGAAGAAGAGAAGGTTGTTTCCATTCGCCTACAATC
TACAGAACTATTTTATTCATGTGGGTACGGAGACGACGAGTGGTCCCAGA
CATTTGTGTAATTGTACGGCTTGGTAGATGTCAATCATCGCCACCAGCAG
CGCCATCTCTACAGCACCCACAAGCGCAAAAACATGTTCAGGCACATCCC
CAAAGAGAAAGAGCAACAATCGCCCCCGCTCCTTCGTTGGCGTCCTCTCT
CTCCTCCTCTTCATCCTCGCCCTCCAACTTCGCAGCGTCCACGCAGAATC
CTGCGCCTCGTTCACCGACTGCTTCACGTGCAGCAATAGCAGCTTCTCCT
GTCATTGGTGTGGAGCAGACAACAAATGTCACACCATCGGCTCTCCTTAC
GGCTGCTTGACAGGCGTCAACTGCTATACAAGCAAAGCATGCGTCCGCTC
TGAGCCTCAACCCATGCCCCATCCTACCCCTTCTGGCTCGGTGTTGGTGG
GGTTAGGCGTCTTCCTCCTATCCTCACTCCTTTGCACAAGTGCTTGTTTT
TTTGTGGCAAATGAGTACGTGCATCACGCTACGGTGGTCCGCGTGGAGAA
AGATCCAAATTACCAGGAATTGCGGGCGTTTGATGACGAGGAGGAGGAGG
GAGGGAGTGAAGGAGCATGGGGCGGAGCTCGACGAGGGCCTGGAAGGGGC
AGCAGCCCCATCGATAGCGTCTATGTACGAGGAGGAGGCATCGAGAGCGA
TATATGGGACCCTATCCCGAGAATAACAGTGATTGAACGCTCTCGGTTTT
TGATAATATTTTCAAAGCTCATTCGAGCCATGCTTGTTCTGGCCGTGGGG
TGGCTAGTGCTGGTGGCAGTGGCTGTGTTGCTGTATACTCCACAGATGCC
CGATGTGAATGTGTGTAATACGGCCTTGGATTGGGGCTCGATCTTCTCGG
GCTTCGAAAAGTTGAAACTGGAGGCCGACTATCAATTATTGCTGTCCGTT
TACAACCCTAACAGGCTCGACGTCGCCATCACTTCAGGGCAAGGCGTCTT
TAAGCACGACCATGAGCCAATCGGGCAAGTCGAAATCTCCCCCTTTGTAA
TCAAAGGTGGGGCAATCACTGATGTTCTTGTCACTTTAGTCTTCACCCCT
TCCGTGTGGAAAAGCCTCCAATTAGACTTGGCCTTTCAAACAGGCTCGTT
AATGGTTATGGTGGATGTAAATGTTGCCGGTAGAGTGATATGGAAGAAGA
GAAGGTTGTTTCCATTCGCCTACAATCTACAGAACTATTTTATTCATGTG
GGTACGGAGACGACGAGTGGTCCCAGACATTTGTGTAATTGTACGGCTTG
GTAG

Synonyms

Publications