jgi.p|Nanoce1779_2|587819, mRNA_4763 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587819
Unique Name	mRNA_4763
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1800
Alignment location	scaffold_9:580555..582456 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587905
Track	FilteredModels2
ProteinId	587819

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:580555..582456 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587819	gene_4763	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587819	mRNA_4763-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4763	CDS_4763	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:580555..582456+
coding sequence from alignment at scaffold_9:580555..582456+

mRNA sequence

>mRNA_4763 ID=mRNA_4763|Name=jgi.p|Nanoce1779_2|587819|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp
AACCACAGCACAATAAAAGCACCACCAGCCGAGAGGACTGGCCAAAAAAT
GCGTCCGATAATGGCAGCCATCCACATACTTGTGGCGATGCTTCTCGTTG
TCTCCAGCGCGAACAAGAAGGCAGCTCTCTATCATGCCAAAAAACTCCGT
GAAAAGGGGGCAGCTGTTGCCATTGAGGCTTCGGGATACGCCGAGGATGT
GCATACATTCAAGGAGCTCGAGTCCAAGCTGTCCGGATGCCACCTCAAGG
GGCCCTGCGCCTGGCAGTTCAGCTTCACGCCCACTGACGTCAGTGTCATC
GCACCGGAGCCCCATGTCATTTACCACTACTCCTTGCACACCATGTTTGA
GCATGACACGACCGTCTATCGCATCCGGGGCCAATTTCCCAAGGTACGCT
ATTTCTCCGTGCAGACCTACACCTTCTTGCGGCAGCCCATCGACGGCATA
GCCGACTACCACATGACGCCTTCCACTGGCATCAATCCCTTTCTTAATCG
TGTGAATTCTTCAGATGATAACGGGCACTACGAGGTTTACTTCACAGCCA
ACGGCGACCACGGTTACCCTAACGAGCTCCGCGCCTACCAACCAGACCGC
GGCCTGACGACGCTGCGCGGCGGGAAAAACACGTCCTTCAACCTCTTCAC
CATGGCTATCCGTTTTTATGCCTCCGATCCAAGCAATGACCAGAGCGTGA
TCTGGGGCCGGGGCCCGTCGCTGTTTGGGTTCGTGGATCCGCCCACAGTG
GAGTGGCGCAAGCACGACAACGGCGCATGGCAGGTTATTCCTCAGTGCTC
CCCTACAGAACAGCAGTGCAACACTGCCATCTTGGACAGCTTCATGAGCT
TTCCACAATTTCTTTTACCCCTTCGTGACATCCCTGGCTTCATTTGCCCC
GTGGCAGAGAAGGACAAGATTAACTCCGACTTTTACCTGTGGCGAGCGAA
GCTCCCCCAAATTCTTGATTTGTATATTGGCTTCAAAAATTCAGACGTCA
CTTACCTTTACTGGTGTGACATTGCCGCACGGATGGGCAAAGACTTTGTG
CTCAAGATCACCGGTACTCTGGGAAGCACGCCCAAGGGTTTGTATGACGA
GCCGTTGGTGTCGCACCCGTGGGAGTACGACTCCCGCTACATCTCCTTTC
ACGCCGTGGACCTGCGCCCACCCATCCCTTCCTACTCGGCTATCTACGAC
GGAGACCTGTGGGCGAAACATGGCCCGGGCTGGAATCGGCAGTACACCAT
AATCTCGGCAGAGGATGAGTCCGTGGCGGAAGCATGCGGACTTCTGGACC
GTAGCAAGGATTCGTTCCTCGCTTTCAGTCGCGCCGATGGGAATATGAGC
TCTCGGCATGTGGCGACTCCTGGCATTATCTACCGAGAAATTTTGCCGCG
CATCACACGTTTGAAAGAAGGCGGCAAGTCTCCCACGGACGTGGCCCAGC
AGTGTGGCATGGAGACTGACCTCCCCGATGCCGTGTCGAGCGAAGACATT
GCTAGCTCTTCCATGGGCATGGGTGGCCACGCTCTGAAGAAGCCTCACAA
CCCCCAGTGCGACGATCCCAACTTCTCCCGTCTCGTGATGCAAGAGCGCT
ATCCCGAGATAGCCGTCTACCACTGCGATGTGAATTCTGGCGTTGCTACG
CTACTCGCGTAATTGCAGAGAAAATGTGTACTATAGGAAAAGACAAAAAG
AATGGCAAGAGAGTAAAAGCAACCGAGCATCCTACCACTTGAGTCAAACA
ATATCAAAATATATTGCAATAACAAAGCCAAAGGTGAACATCTATCCCAG

protein sequence of jgi.p|Nanoce1779_2|587819

>mRNA_4763-protein ID=mRNA_4763-protein|Name=jgi.p|Nanoce1779_2|587819|organism=Nannochloropsis oceanica|type=polypeptide|length=538bp
MRPIMAAIHILVAMLLVVSSANKKAALYHAKKLREKGAAVAIEASGYAED
VHTFKELESKLSGCHLKGPCAWQFSFTPTDVSVIAPEPHVIYHYSLHTMF
EHDTTVYRIRGQFPKVRYFSVQTYTFLRQPIDGIADYHMTPSTGINPFLN
RVNSSDDNGHYEVYFTANGDHGYPNELRAYQPDRGLTTLRGGKNTSFNLF
TMAIRFYASDPSNDQSVIWGRGPSLFGFVDPPTVEWRKHDNGAWQVIPQC
SPTEQQCNTAILDSFMSFPQFLLPLRDIPGFICPVAEKDKINSDFYLWRA
KLPQILDLYIGFKNSDVTYLYWCDIAARMGKDFVLKITGTLGSTPKGLYD
EPLVSHPWEYDSRYISFHAVDLRPPIPSYSAIYDGDLWAKHGPGWNRQYT
IISAEDESVAEACGLLDRSKDSFLAFSRADGNMSSRHVATPGIIYREILP
RITRLKEGGKSPTDVAQQCGMETDLPDAVSSEDIASSSMGMGGHALKKPH
NPQCDDPNFSRLVMQERYPEIAVYHCDVNSGVATLLA*

mRNA from alignment at scaffold_9:580555..582456+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4763 ID=mRNA_4763|Name=jgi.p|Nanoce1779_2|587819|organism=Nannochloropsis oceanica|type=mRNA|length=1902bp|location=Sequence derived from alignment at scaffold_9:580555..582456+ (Nannochloropsis oceanica)
AACCACAGCACAATAAAAGCACCACCAGCCGAGAGGACTGGCCAAAAAAT
GCGTCCGATAATGGCAGCCATCCACATACTTGTGGCGATGCTTCTCGTTG
TCTCCAGGTAAGTCCACATCACGCTCCTCATGCTTTCGATCCTTCCACCA
GCTGCCTATTCTGGCCTCGCTCACTGTCGGCCACACGCATCCACACCACA
ACACCATAGCGCGAACAAGAAGGCAGCTCTCTATCATGCCAAAAAACTCC
GTGAAAAGGGGGCAGCTGTTGCCATTGAGGCTTCGGGATACGCCGAGGAT
GTGCATACATTCAAGGAGCTCGAGTCCAAGCTGTCCGGATGCCACCTCAA
GGGGCCCTGCGCCTGGCAGTTCAGCTTCACGCCCACTGACGTCAGTGTCA
TCGCACCGGAGCCCCATGTCATTTACCACTACTCCTTGCACACCATGTTT
GAGCATGACACGACCGTCTATCGCATCCGGGGCCAATTTCCCAAGGTACG
CTATTTCTCCGTGCAGACCTACACCTTCTTGCGGCAGCCCATCGACGGCA
TAGCCGACTACCACATGACGCCTTCCACTGGCATCAATCCCTTTCTTAAT
CGTGTGAATTCTTCAGATGATAACGGGCACTACGAGGTTTACTTCACAGC
CAACGGCGACCACGGTTACCCTAACGAGCTCCGCGCCTACCAACCAGACC
GCGGCCTGACGACGCTGCGCGGCGGGAAAAACACGTCCTTCAACCTCTTC
ACCATGGCTATCCGTTTTTATGCCTCCGATCCAAGCAATGACCAGAGCGT
GATCTGGGGCCGGGGCCCGTCGCTGTTTGGGTTCGTGGATCCGCCCACAG
TGGAGTGGCGCAAGCACGACAACGGCGCATGGCAGGTTATTCCTCAGTGC
TCCCCTACAGAACAGCAGTGCAACACTGCCATCTTGGACAGCTTCATGAG
CTTTCCACAATTTCTTTTACCCCTTCGTGACATCCCTGGCTTCATTTGCC
CCGTGGCAGAGAAGGACAAGATTAACTCCGACTTTTACCTGTGGCGAGCG
AAGCTCCCCCAAATTCTTGATTTGTATATTGGCTTCAAAAATTCAGACGT
CACTTACCTTTACTGGTGTGACATTGCCGCACGGATGGGCAAAGACTTTG
TGCTCAAGATCACCGGTACTCTGGGAAGCACGCCCAAGGGTTTGTATGAC
GAGCCGTTGGTGTCGCACCCGTGGGAGTACGACTCCCGCTACATCTCCTT
TCACGCCGTGGACCTGCGCCCACCCATCCCTTCCTACTCGGCTATCTACG
ACGGAGACCTGTGGGCGAAACATGGCCCGGGCTGGAATCGGCAGTACACC
ATAATCTCGGCAGAGGATGAGTCCGTGGCGGAAGCATGCGGACTTCTGGA
CCGTAGCAAGGATTCGTTCCTCGCTTTCAGTCGCGCCGATGGGAATATGA
GCTCTCGGCATGTGGCGACTCCTGGCATTATCTACCGAGAAATTTTGCCG
CGCATCACACGTTTGAAAGAAGGCGGCAAGTCTCCCACGGACGTGGCCCA
GCAGTGTGGCATGGAGACTGACCTCCCCGATGCCGTGTCGAGCGAAGACA
TTGCTAGCTCTTCCATGGGCATGGGTGGCCACGCTCTGAAGAAGCCTCAC
AACCCCCAGTGCGACGATCCCAACTTCTCCCGTCTCGTGATGCAAGAGCG
CTATCCCGAGATAGCCGTCTACCACTGCGATGTGAATTCTGGCGTTGCTA
CGCTACTCGCGTAATTGCAGAGAAAATGTGTACTATAGGAAAAGACAAAA
AGAATGGCAAGAGAGTAAAAGCAACCGAGCATCCTACCACTTGAGTCAAA
CAATATCAAAATATATTGCAATAACAAAGCCAAAGGTGAACATCTATCCC
AG

Coding sequence (CDS) from alignment at scaffold_9:580555..582456+

>mRNA_4763 ID=mRNA_4763|Name=jgi.p|Nanoce1779_2|587819|organism=Nannochloropsis oceanica|type=CDS|length=3228bp|location=Sequence derived from alignment at scaffold_9:580555..582456+ (Nannochloropsis oceanica)
ATGCGTCCGATAATGGCAGCCATCCACATACTTGTGGCGATGCTTCTCGT
TGTCTCCAGCGCGAACAAGAAGGCAGCTCTCTATCATGCCAAAAAACTCC
GTGAAAAGGGGGCAGCTGTTGCCATTGAGGCTTCGGGATACGCCGAGGAT
GTGCATACATTCAAGGAGCTCGAGTCCAAGCTGTCCGGATGCCACCTCAA
GGGGCCCTGCGCCTGGCAGTTCAGCTTCACGCCCACTGACGTCAGTGTCA
TCGCACCGGAGCCCCATGTCATTTACCACTACTCCTTGCACACCATGTTT
GAGCATGACACGACCGTCTATCGCATCCGGGGCCAATTTCCCAAGGTACG
CTATTTCTCCGTGCAGACCTACACCTTCTTGCGGCAGCCCATCGACGGCA
TAGCCGACTACCACATGACGCCTTCCACTGGCATCAATCCCTTTCTTAAT
CGTGTGAATTCTTCAGATGATAACGGGCACTACGAGGTTTACTTCACAGC
CAACGGCGACCACGGTTACCCTAACGAGCTCCGCGCCTACCAACCAGACC
GCGGCCTGACGACGCTGCGCGGCGGGAAAAACACGTCCTTCAACCTCTTC
ACCATGGCTATCCGTTTTTATGCCTCCGATCCAAGCAATGACCAGAGCGT
GATCTGGGGCCGGGGCCCGTCGCTGTTTGGGTTCGTGGATCCGCCCACAG
TGGAGTGGCGCAAGCACGACAACGGCGCATGGCAGGTTATTCCTCAGTGC
TCCCCTACAGAACAGCAGTGCAACACTGCCATCTTGGACAGCTTCATGAG
CTTTCCACAATTTCTTTTACCCCTTCGTGACATCCCTGGCTTCATTTGCC
CCGTGGCAGAGAAGGACAAGATTAACTCCGACTTTTACCTGTGGCGAGCG
AAGCTCCCCCAAATTCTTGATTTGTATATTGGCTTCAAAAATTCAGACGT
CACTTACCTTTACTGGTGTGACATTGCCGCACGGATGGGCAAAGACTTTG
TGCTCAAGATCACCGGTACTCTGGGAAGCACGCCCAAGGGTTTGTATGAC
GAGCCGTTGGTGTCGCACCCGTGGGAGTACGACTCCCGCTACATCTCCTT
TCACGCCGTGGACCTGCGCCCACCCATCCCTTCCTACTCGGCTATCTACG
ACGGAGACCTGTGGGCGAAACATGGCCCGGGCTGGAATCGGCAGTACACC
ATAATCTCGGCAGAGGATGAGTCCGTGGCGGAAGCATGCGGACTTCTGGA
CCGTAGCAAGGATTCGTTCCTCGCTTTCAGTCGCGCCGATGGGAATATGA
GCTCTCGGCATGTGGCGACTCCTGGCATTATCTACCGAGAAATTTTGCCG
CGCATCACACGTTTGAAAGAAGGCGGCAAGTCTCCCACGGACGTGGCCCA
GCAGTGTGGCATGGAGACTGACCTCCCCGATGCCGTGTCGAGCGAAGACA
TTGCTAGCTCTTCCATGGGCATGGGTGGCCACGCTCTGAAGAAGCCTCAC
AACCCCCAGTGCGACGATCCCAACTTCTCCCGTCTCGTGATGCAAGAGCG
CTATCCCGAGATAGCCGTCTACCACTGCGATGTGAATTCTGGCGTTGCTA
CGCTACTCGCGTAAATGCGTCCGATAATGGCAGCCATCCACATACTTGTG
GCGATGCTTCTCGTTGTCTCCAGCGCGAACAAGAAGGCAGCTCTCTATCA
TGCCAAAAAACTCCGTGAAAAGGGGGCAGCTGTTGCCATTGAGGCTTCGG
GATACGCCGAGGATGTGCATACATTCAAGGAGCTCGAGTCCAAGCTGTCC
GGATGCCACCTCAAGGGGCCCTGCGCCTGGCAGTTCAGCTTCACGCCCAC
TGACGTCAGTGTCATCGCACCGGAGCCCCATGTCATTTACCACTACTCCT
TGCACACCATGTTTGAGCATGACACGACCGTCTATCGCATCCGGGGCCAA
TTTCCCAAGGTACGCTATTTCTCCGTGCAGACCTACACCTTCTTGCGGCA
GCCCATCGACGGCATAGCCGACTACCACATGACGCCTTCCACTGGCATCA
ATCCCTTTCTTAATCGTGTGAATTCTTCAGATGATAACGGGCACTACGAG
GTTTACTTCACAGCCAACGGCGACCACGGTTACCCTAACGAGCTCCGCGC
CTACCAACCAGACCGCGGCCTGACGACGCTGCGCGGCGGGAAAAACACGT
CCTTCAACCTCTTCACCATGGCTATCCGTTTTTATGCCTCCGATCCAAGC
AATGACCAGAGCGTGATCTGGGGCCGGGGCCCGTCGCTGTTTGGGTTCGT
GGATCCGCCCACAGTGGAGTGGCGCAAGCACGACAACGGCGCATGGCAGG
TTATTCCTCAGTGCTCCCCTACAGAACAGCAGTGCAACACTGCCATCTTG
GACAGCTTCATGAGCTTTCCACAATTTCTTTTACCCCTTCGTGACATCCC
TGGCTTCATTTGCCCCGTGGCAGAGAAGGACAAGATTAACTCCGACTTTT
ACCTGTGGCGAGCGAAGCTCCCCCAAATTCTTGATTTGTATATTGGCTTC
AAAAATTCAGACGTCACTTACCTTTACTGGTGTGACATTGCCGCACGGAT
GGGCAAAGACTTTGTGCTCAAGATCACCGGTACTCTGGGAAGCACGCCCA
AGGGTTTGTATGACGAGCCGTTGGTGTCGCACCCGTGGGAGTACGACTCC
CGCTACATCTCCTTTCACGCCGTGGACCTGCGCCCACCCATCCCTTCCTA
CTCGGCTATCTACGACGGAGACCTGTGGGCGAAACATGGCCCGGGCTGGA
ATCGGCAGTACACCATAATCTCGGCAGAGGATGAGTCCGTGGCGGAAGCA
TGCGGACTTCTGGACCGTAGCAAGGATTCGTTCCTCGCTTTCAGTCGCGC
CGATGGGAATATGAGCTCTCGGCATGTGGCGACTCCTGGCATTATCTACC
GAGAAATTTTGCCGCGCATCACACGTTTGAAAGAAGGCGGCAAGTCTCCC
ACGGACGTGGCCCAGCAGTGTGGCATGGAGACTGACCTCCCCGATGCCGT
GTCGAGCGAAGACATTGCTAGCTCTTCCATGGGCATGGGTGGCCACGCTC
TGAAGAAGCCTCACAACCCCCAGTGCGACGATCCCAACTTCTCCCGTCTC
GTGATGCAAGAGCGCTATCCCGAGATAGCCGTCTACCACTGCGATGTGAA
TTCTGGCGTTGCTACGCTACTCGCGTAA

Synonyms

Publications