jgi.p|Nanoce1779_2|442659, mRNA_4762 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|442659
Unique Name	mRNA_4762
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2172
Alignment location	scaffold_9:578276..580447 -

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Properties


Property Name	Value
TranscriptId	442745
Track	FilteredModels2
ProteinId	442659

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:578276..580447 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|442659	gene_4762	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|442659	mRNA_4762-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4762	CDS_4762	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:578276..580447-
coding sequence from alignment at scaffold_9:578276..580447-

mRNA sequence

>mRNA_4762 ID=mRNA_4762|Name=jgi.p|Nanoce1779_2|442659|organism=Nannochloropsis oceanica|type=mRNA|length=2172bp
GGCACATAAGCATGTTGATGGTTGTAGCGTGTGAGGCGCTTGTTACTCCA
TTTTGCCGCCAAATTCAGCACATGCGGGGAGCCGAGAGGGCCAGGCTTCG
CGAGCACACACGGCAGGAGCAGCACAAACGCGGCGAAAGCCGTTTCCAGG
GGAGGTGGATCAAGGGAATCCTTGTGGCTGCGCATTTTGCGGCATCGTTG
CTTGCACTAACCTCGGACGTTACCGCTAAATCTTACATTCAGGCACAAAA
TTGCAGCGGTGGTCTTTGCAAGTCGCTTTCCGCAGAGCAAAGCTTCCTGC
TAGATTGTGATGGCGGCCGAGGCAGCTCAAGCGGGCTTGGCGGAGGCGGA
ACCCGGAGTGCCCTCAACACCACCGCAAGGTCATGATGAGGGCGAAGCCG
TGAAGGAAGAGGAGGTGAGTTGGGAAACGGTGGGTATCAGCAAGGGCTTG
TCCGAAGACAACAAGCCCACGGAGGGAAGCAAACCATCCTCTCCATTCTC
CGCCTCGGCCCCGCCCTCCGCCACGAAAGGCTGCCAAAAGGAGGATGACG
ACGACAGTGACGATGAGTCTTCGAGCGGAAAGGACGACGATGGCGTGCAG
CTTGGCTTTGTGGAGTCCATTACCTCAGAGCTAAAAGGCAAGTTGCTCTT
TCAAGATCCAGACTGGCATGAATGGGATGGGGGAAAGGTGGGAGGGAAAC
CCATCTGGCTCAACCCACGCGATCTTCCCTCACGCGCTATGTTGGATTGT
GCATCATGTCAGGACCCACTCGTTTTTATTTTGCAGATATATTGCCCATT
GGACGAACCTATGGAGGCATTTCATCGTGTGTTATATGTGTTTGCGTGTC
GCAAGCCTCGGTGTTACGGGAAAGGTTGTATCAAGGTCCTACGGTGTCAG
CTTTCGAGAAAGAATGCATTCTACGCTTATGTTGGGGACAGCGGGAGAAG
TAAGAAGGTGGAGTTGAAAGAGATGAGGGAGGCGAGGGAGAGTCTGGCGG
CGAAGACCTGTGACTTGTGTGGGCAGGGCGCGGATAAGGTATGTGCGGGT
TGCAAGGGTGTGAATTACTGCACCCGGACCCATCAGAAGGAGGGATGGAA
AGCGGGACATAAACACGTGTGTAAAGGACTATGGAACGGGAAAGGGGATG
CGGAAGGGCAGTGCCACGAAATGGAGTGTGGGACTGATGATGCGACGGCG
ACGAACGGATCAGCACCAGCAGAAGGAGAAGGAAGAGGGGAAGGAGCAGC
AGCACCAGCAGCACCAGCAGCACCAGCAGCACCAGAAGCACGAGATTCCC
CACCCCCCTCTTTGTCTGTCTTTCCTGAGTTTGAAATCGTGATTGAGGAA
GAGAAGCGAGAAGAGGGAGAAGGGCAGGGGAAGAACAAGGAGGATGACGG
TAACGCGGCTCTCCTGAAAAAGTACCGAGATGTGGTAGTAAACGAGACAG
ACGACGACGCCCGTGTTGGTCAACGACATCTGGACGAAGCAACGGGGGCA
AAGTCTGCATTAAAAGATCGGCAAAGCTTGCGTTTTCTGGCTGTGATAGG
GAGGGAACCAGAGCAGATATTGAGGTATGCGAGGTGGAATGATAAAGCCC
CTTTATGGGTCTCCGAAGAAGACCAGCCTTCTATAGATATTGATGTGCCC
GCTTGTGAGAGGTGTGGAGGTAGAAGAGCATTTGAATTTCAGGTGATGCC
CCAACTGTTGCATTATTTGAGAGTGGATTCACAGGCGATTTTTCCGAGTA
AGCCTGGTGAAGGGTTCAGGTTGGGGGCGATGGATTGGGGAACATTGGCC
GTGTATACGTGTATGAAGAGCTGTGGGGGTGGTGGAGGGGAGGGAGGGGG
AGAGGAAGAGGGAAGTTATGTAGAGGAATTCGTGTGGCGGCAAAAGCCGA
TGGCGTGAGAGAGCGGAGGACGGCGAGGACGAAATGGAGGACGAGGAAAA
GAAGGGAACAAACAAAAGACAAACAACATGTATTTCTAGTTCTTTTGGCG
TTCCTACATCCCTCTAGAACTATCGCATGCTACCTGCGTCTTCGAGGTCT
TGCATACGAGGGGGAGCCTTCCAACAAGAAATTGTTGCATATTCACCCCT
TATTTCCTTGTCCCAGTTTTTCTAGCGACTTTGACAGGTTTTTCGACCAG
GCAAAGTCCCCGGACGGCCCAC

protein sequence of jgi.p|Nanoce1779_2|442659

>mRNA_4762-protein ID=mRNA_4762-protein|Name=jgi.p|Nanoce1779_2|442659|organism=Nannochloropsis oceanica|type=polypeptide|length=533bp
MAAEAAQAGLAEAEPGVPSTPPQGHDEGEAVKEEEVSWETVGISKGLSED
NKPTEGSKPSSPFSASAPPSATKGCQKEDDDDSDDESSSGKDDDGVQLGF
VESITSELKGKLLFQDPDWHEWDGGKVGGKPIWLNPRDLPSRAMLDCASC
QDPLVFILQIYCPLDEPMEAFHRVLYVFACRKPRCYGKGCIKVLRCQLSR
KNAFYAYVGDSGRSKKVELKEMREARESLAAKTCDLCGQGADKVCAGCKG
VNYCTRTHQKEGWKAGHKHVCKGLWNGKGDAEGQCHEMECGTDDATATNG
SAPAEGEGRGEGAAAPAAPAAPAAPEARDSPPPSLSVFPEFEIVIEEEKR
EEGEGQGKNKEDDGNAALLKKYRDVVVNETDDDARVGQRHLDEATGAKSA
LKDRQSLRFLAVIGREPEQILRYARWNDKAPLWVSEEDQPSIDIDVPACE
RCGGRRAFEFQVMPQLLHYLRVDSQAIFPSKPGEGFRLGAMDWGTLAVYT
CMKSCGGGGGEGGGEEEGSYVEEFVWRQKPMA*

mRNA from alignment at scaffold_9:578276..580447-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4762 ID=mRNA_4762|Name=jgi.p|Nanoce1779_2|442659|organism=Nannochloropsis oceanica|type=mRNA|length=2172bp|location=Sequence derived from alignment at scaffold_9:578276..580447- (Nannochloropsis oceanica)
GGCACATAAGCATGTTGATGGTTGTAGCGTGTGAGGCGCTTGTTACTCCA
TTTTGCCGCCAAATTCAGCACATGCGGGGAGCCGAGAGGGCCAGGCTTCG
CGAGCACACACGGCAGGAGCAGCACAAACGCGGCGAAAGCCGTTTCCAGG
GGAGGTGGATCAAGGGAATCCTTGTGGCTGCGCATTTTGCGGCATCGTTG
CTTGCACTAACCTCGGACGTTACCGCTAAATCTTACATTCAGGCACAAAA
TTGCAGCGGTGGTCTTTGCAAGTCGCTTTCCGCAGAGCAAAGCTTCCTGC
TAGATTGTGATGGCGGCCGAGGCAGCTCAAGCGGGCTTGGCGGAGGCGGA
ACCCGGAGTGCCCTCAACACCACCGCAAGGTCATGATGAGGGCGAAGCCG
TGAAGGAAGAGGAGGTGAGTTGGGAAACGGTGGGTATCAGCAAGGGCTTG
TCCGAAGACAACAAGCCCACGGAGGGAAGCAAACCATCCTCTCCATTCTC
CGCCTCGGCCCCGCCCTCCGCCACGAAAGGCTGCCAAAAGGAGGATGACG
ACGACAGTGACGATGAGTCTTCGAGCGGAAAGGACGACGATGGCGTGCAG
CTTGGCTTTGTGGAGTCCATTACCTCAGAGCTAAAAGGCAAGTTGCTCTT
TCAAGATCCAGACTGGCATGAATGGGATGGGGGAAAGGTGGGAGGGAAAC
CCATCTGGCTCAACCCACGCGATCTTCCCTCACGCGCTATGTTGGATTGT
GCATCATGTCAGGACCCACTCGTTTTTATTTTGCAGATATATTGCCCATT
GGACGAACCTATGGAGGCATTTCATCGTGTGTTATATGTGTTTGCGTGTC
GCAAGCCTCGGTGTTACGGGAAAGGTTGTATCAAGGTCCTACGGTGTCAG
CTTTCGAGAAAGAATGCATTCTACGCTTATGTTGGGGACAGCGGGAGAAG
TAAGAAGGTGGAGTTGAAAGAGATGAGGGAGGCGAGGGAGAGTCTGGCGG
CGAAGACCTGTGACTTGTGTGGGCAGGGCGCGGATAAGGTATGTGCGGGT
TGCAAGGGTGTGAATTACTGCACCCGGACCCATCAGAAGGAGGGATGGAA
AGCGGGACATAAACACGTGTGTAAAGGACTATGGAACGGGAAAGGGGATG
CGGAAGGGCAGTGCCACGAAATGGAGTGTGGGACTGATGATGCGACGGCG
ACGAACGGATCAGCACCAGCAGAAGGAGAAGGAAGAGGGGAAGGAGCAGC
AGCACCAGCAGCACCAGCAGCACCAGCAGCACCAGAAGCACGAGATTCCC
CACCCCCCTCTTTGTCTGTCTTTCCTGAGTTTGAAATCGTGATTGAGGAA
GAGAAGCGAGAAGAGGGAGAAGGGCAGGGGAAGAACAAGGAGGATGACGG
TAACGCGGCTCTCCTGAAAAAGTACCGAGATGTGGTAGTAAACGAGACAG
ACGACGACGCCCGTGTTGGTCAACGACATCTGGACGAAGCAACGGGGGCA
AAGTCTGCATTAAAAGATCGGCAAAGCTTGCGTTTTCTGGCTGTGATAGG
GAGGGAACCAGAGCAGATATTGAGGTATGCGAGGTGGAATGATAAAGCCC
CTTTATGGGTCTCCGAAGAAGACCAGCCTTCTATAGATATTGATGTGCCC
GCTTGTGAGAGGTGTGGAGGTAGAAGAGCATTTGAATTTCAGGTGATGCC
CCAACTGTTGCATTATTTGAGAGTGGATTCACAGGCGATTTTTCCGAGTA
AGCCTGGTGAAGGGTTCAGGTTGGGGGCGATGGATTGGGGAACATTGGCC
GTGTATACGTGTATGAAGAGCTGTGGGGGTGGTGGAGGGGAGGGAGGGGG
AGAGGAAGAGGGAAGTTATGTAGAGGAATTCGTGTGGCGGCAAAAGCCGA
TGGCGTGAGAGAGCGGAGGACGGCGAGGACGAAATGGAGGACGAGGAAAA
GAAGGGAACAAACAAAAGACAAACAACATGTATTTCTAGTTCTTTTGGCG
TTCCTACATCCCTCTAGAACTATCGCATGCTACCTGCGTCTTCGAGGTCT
TGCATACGAGGGGGAGCCTTCCAACAAGAAATTGTTGCATATTCACCCCT
TATTTCCTTGTCCCAGTTTTTCTAGCGACTTTGACAGGTTTTTCGACCAG
GCAAAGTCCCCGGACGGCCCAC

Coding sequence (CDS) from alignment at scaffold_9:578276..580447-

>mRNA_4762 ID=mRNA_4762|Name=jgi.p|Nanoce1779_2|442659|organism=Nannochloropsis oceanica|type=CDS|length=1599bp|location=Sequence derived from alignment at scaffold_9:578276..580447- (Nannochloropsis oceanica)
ATGGCGGCCGAGGCAGCTCAAGCGGGCTTGGCGGAGGCGGAACCCGGAGT
GCCCTCAACACCACCGCAAGGTCATGATGAGGGCGAAGCCGTGAAGGAAG
AGGAGGTGAGTTGGGAAACGGTGGGTATCAGCAAGGGCTTGTCCGAAGAC
AACAAGCCCACGGAGGGAAGCAAACCATCCTCTCCATTCTCCGCCTCGGC
CCCGCCCTCCGCCACGAAAGGCTGCCAAAAGGAGGATGACGACGACAGTG
ACGATGAGTCTTCGAGCGGAAAGGACGACGATGGCGTGCAGCTTGGCTTT
GTGGAGTCCATTACCTCAGAGCTAAAAGGCAAGTTGCTCTTTCAAGATCC
AGACTGGCATGAATGGGATGGGGGAAAGGTGGGAGGGAAACCCATCTGGC
TCAACCCACGCGATCTTCCCTCACGCGCTATGTTGGATTGTGCATCATGT
CAGGACCCACTCGTTTTTATTTTGCAGATATATTGCCCATTGGACGAACC
TATGGAGGCATTTCATCGTGTGTTATATGTGTTTGCGTGTCGCAAGCCTC
GGTGTTACGGGAAAGGTTGTATCAAGGTCCTACGGTGTCAGCTTTCGAGA
AAGAATGCATTCTACGCTTATGTTGGGGACAGCGGGAGAAGTAAGAAGGT
GGAGTTGAAAGAGATGAGGGAGGCGAGGGAGAGTCTGGCGGCGAAGACCT
GTGACTTGTGTGGGCAGGGCGCGGATAAGGTATGTGCGGGTTGCAAGGGT
GTGAATTACTGCACCCGGACCCATCAGAAGGAGGGATGGAAAGCGGGACA
TAAACACGTGTGTAAAGGACTATGGAACGGGAAAGGGGATGCGGAAGGGC
AGTGCCACGAAATGGAGTGTGGGACTGATGATGCGACGGCGACGAACGGA
TCAGCACCAGCAGAAGGAGAAGGAAGAGGGGAAGGAGCAGCAGCACCAGC
AGCACCAGCAGCACCAGCAGCACCAGAAGCACGAGATTCCCCACCCCCCT
CTTTGTCTGTCTTTCCTGAGTTTGAAATCGTGATTGAGGAAGAGAAGCGA
GAAGAGGGAGAAGGGCAGGGGAAGAACAAGGAGGATGACGGTAACGCGGC
TCTCCTGAAAAAGTACCGAGATGTGGTAGTAAACGAGACAGACGACGACG
CCCGTGTTGGTCAACGACATCTGGACGAAGCAACGGGGGCAAAGTCTGCA
TTAAAAGATCGGCAAAGCTTGCGTTTTCTGGCTGTGATAGGGAGGGAACC
AGAGCAGATATTGAGGTATGCGAGGTGGAATGATAAAGCCCCTTTATGGG
TCTCCGAAGAAGACCAGCCTTCTATAGATATTGATGTGCCCGCTTGTGAG
AGGTGTGGAGGTAGAAGAGCATTTGAATTTCAGGTGATGCCCCAACTGTT
GCATTATTTGAGAGTGGATTCACAGGCGATTTTTCCGAGTAAGCCTGGTG
AAGGGTTCAGGTTGGGGGCGATGGATTGGGGAACATTGGCCGTGTATACG
TGTATGAAGAGCTGTGGGGGTGGTGGAGGGGAGGGAGGGGGAGAGGAAGA
GGGAAGTTATGTAGAGGAATTCGTGTGGCGGCAAAAGCCGATGGCGTGA

Synonyms

Publications