jgi.p|Nanoce1779_2|587809, mRNA_4761 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587809
Unique Name	mRNA_4761
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1720
Alignment location	scaffold_9:576532..578251 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587895
Track	FilteredModels2
ProteinId	587809

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:576532..578251 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587809	gene_4761	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587809	mRNA_4761-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4761	CDS_4761	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:576532..578251+
coding sequence from alignment at scaffold_9:576532..578251+

mRNA sequence

>mRNA_4761 ID=mRNA_4761|Name=jgi.p|Nanoce1779_2|587809|organism=Nannochloropsis oceanica|type=mRNA|length=1720bp
GAGTATAAGAGGCTGCAGGAGTGGAGGCAGGCGCATGAGAAAGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGGAAGGGAGGAGGGACGGG
ATGCATAGGAGAAGGGACCGAGGGAGGGAGATGAGTGATGAAAAGGCAGA
GGATGGAGGGGAAGGGAGCAGCGGTGGCAGGGGTGTGAAATGTAGAGGAA
AGAAGATAAAGCAAGCCAACAAAATCAATGGTGAACATAGGAAGGAATTC
GTTAAGGAGAAGAGAGAGGCGATATGTTTGCAAATGATCTCACTGGCTCC
CTCGTGAAATGTTTGCCCTGGATCGAGATGCCCACTCTCTCTCTCACTCT
CTCACCCACACACCCACCCACCCTCCCACCCTCCAACCCATACAGACACA
CGCATACGCACACACACACAGGCATAAACACAGGAATACACACACATAAG
CATACATGCACATACGCACGCACACACACACAGAGGAAAGAACGATATCA
AGTCCAACACGGTTCGACCCTCGCGTTTCCTTTCCTTAAATGCTGAGTCC
ATTTGCCGACCCTTTTCCCTTTCCTGTCTTCCCCCCACCCACACAAGACA
GGAGACGTTGATGCGGCCCCTACAAGAGAAAAGATCAAGAGGGACACTCA
GCCTCGCGGGCCAAAAACTTCCGCTTTCCTCCGTTCTCCATCTTCTCATC
CTAGCCCTCGTGCACCATACACTCGCCTTCACTACTTCGCCTCCCATGAC
GCGAACAAGGATGTCTGCTGCTGCTGCTGCTGCGGGTGATCCCTCCGACC
CAAGCCGCCTCCGCCTCGTGACCAACAAAAAATGCCCCTTTGCACAAAAA
GCATGGATTGCCCTCGACGCTTACTATCACAGCAACGGCAAGAGTATCCA
GACTGGTAACGGCGACATCAGCGGATCCACAGCCATAGCTGCAAGCTCAG
GGGGCTACGAATTGCTGGAAGTGGGGTTATATGGAGGGAATGGCAAGCCA
GGCTGGTTCAGAGAGATAAGCCCCAAAGGACAGGTACCTGTTTTGTGGTT
GCCCAGCGGTCGTATTATCATTGAGAGTGACGTTATTTTAGACCACCTCA
CCACCCTCCCGGAGCCCAACCCTCTGATCCCTCCTTCCCACGAGGCCTAC
AGACAATGGCAGGCCATCTTAGTACCATTTCTTAAGACAGCTCGTACAGC
TATCGAGCATGGGGATGATGCCTCCCTTTTCTCCGCCTTGTCGCAACTCG
AGGAACAAATTCCCACCCCTGGTCCTTTTTTGGCCGGCGCGACATTTTCT
GTGGCAGACTGCAGTGTCCTACCATTCATGCAGCGGTTAAACGATAAGTA
CCAGGAGGTGGTGGAGAAGGCAGCGCCGAGTCTGAATGCATGGTATGCGC
TCGCTCAAAAAGAGCGGTGTTTTCAGGCGACGCGTGTGGGGGAATACTGG
ATGTGGTGGTGAGAGGTGGTTGAAAGATAAGAGGGGAGAGTTTTCCCCCT
TGCCCTTCCACCGATTGCTTTTGCGAAAGGAACGAGAAAGAGTAAGAATG
AAAAACCAACTTTATACAACAATCATTAAAAGAATCAAAAGACATCACAG
GCCAAACAAGTTCGTGTCCCGGGACGGCAATGGGGCACGTAACATCCTAC
GGGTGTACCGCGGCAAGATATGCGGACACTCTATGTGTAGCGTTCCCGCT
GACCTCTTCTTTAATCCTCC

protein sequence of jgi.p|Nanoce1779_2|587809

>mRNA_4761-protein ID=mRNA_4761-protein|Name=jgi.p|Nanoce1779_2|587809|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MRPLQEKRSRGTLSLAGQKLPLSSVLHLLILALVHHTLAFTTSPPMTRTR
MSAAAAAAGDPSDPSRLRLVTNKKCPFAQKAWIALDAYYHSNGKSIQTGN
GDISGSTAIAASSGGYELLEVGLYGGNGKPGWFREISPKGQVPVLWLPSG
RIIIESDVILDHLTTLPEPNPLIPPSHEAYRQWQAILVPFLKTARTAIEH
GDDASLFSALSQLEEQIPTPGPFLAGATFSVADCSVLPFMQRLNDKYQEV
VEKAAPSLNAWYALAQKERCFQATRVGEYWMWW*

mRNA from alignment at scaffold_9:576532..578251+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4761 ID=mRNA_4761|Name=jgi.p|Nanoce1779_2|587809|organism=Nannochloropsis oceanica|type=mRNA|length=1720bp|location=Sequence derived from alignment at scaffold_9:576532..578251+ (Nannochloropsis oceanica)
GAGTATAAGAGGCTGCAGGAGTGGAGGCAGGCGCATGAGAAAGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGGAAGGGAGGAGGGACGGG
ATGCATAGGAGAAGGGACCGAGGGAGGGAGATGAGTGATGAAAAGGCAGA
GGATGGAGGGGAAGGGAGCAGCGGTGGCAGGGGTGTGAAATGTAGAGGAA
AGAAGATAAAGCAAGCCAACAAAATCAATGGTGAACATAGGAAGGAATTC
GTTAAGGAGAAGAGAGAGGCGATATGTTTGCAAATGATCTCACTGGCTCC
CTCGTGAAATGTTTGCCCTGGATCGAGATGCCCACTCTCTCTCTCACTCT
CTCACCCACACACCCACCCACCCTCCCACCCTCCAACCCATACAGACACA
CGCATACGCACACACACACAGGCATAAACACAGGAATACACACACATAAG
CATACATGCACATACGCACGCACACACACACAGAGGAAAGAACGATATCA
AGTCCAACACGGTTCGACCCTCGCGTTTCCTTTCCTTAAATGCTGAGTCC
ATTTGCCGACCCTTTTCCCTTTCCTGTCTTCCCCCCACCCACACAAGACA
GGAGACGTTGATGCGGCCCCTACAAGAGAAAAGATCAAGAGGGACACTCA
GCCTCGCGGGCCAAAAACTTCCGCTTTCCTCCGTTCTCCATCTTCTCATC
CTAGCCCTCGTGCACCATACACTCGCCTTCACTACTTCGCCTCCCATGAC
GCGAACAAGGATGTCTGCTGCTGCTGCTGCTGCGGGTGATCCCTCCGACC
CAAGCCGCCTCCGCCTCGTGACCAACAAAAAATGCCCCTTTGCACAAAAA
GCATGGATTGCCCTCGACGCTTACTATCACAGCAACGGCAAGAGTATCCA
GACTGGTAACGGCGACATCAGCGGATCCACAGCCATAGCTGCAAGCTCAG
GGGGCTACGAATTGCTGGAAGTGGGGTTATATGGAGGGAATGGCAAGCCA
GGCTGGTTCAGAGAGATAAGCCCCAAAGGACAGGTACCTGTTTTGTGGTT
GCCCAGCGGTCGTATTATCATTGAGAGTGACGTTATTTTAGACCACCTCA
CCACCCTCCCGGAGCCCAACCCTCTGATCCCTCCTTCCCACGAGGCCTAC
AGACAATGGCAGGCCATCTTAGTACCATTTCTTAAGACAGCTCGTACAGC
TATCGAGCATGGGGATGATGCCTCCCTTTTCTCCGCCTTGTCGCAACTCG
AGGAACAAATTCCCACCCCTGGTCCTTTTTTGGCCGGCGCGACATTTTCT
GTGGCAGACTGCAGTGTCCTACCATTCATGCAGCGGTTAAACGATAAGTA
CCAGGAGGTGGTGGAGAAGGCAGCGCCGAGTCTGAATGCATGGTATGCGC
TCGCTCAAAAAGAGCGGTGTTTTCAGGCGACGCGTGTGGGGGAATACTGG
ATGTGGTGGTGAGAGGTGGTTGAAAGATAAGAGGGGAGAGTTTTCCCCCT
TGCCCTTCCACCGATTGCTTTTGCGAAAGGAACGAGAAAGAGTAAGAATG
AAAAACCAACTTTATACAACAATCATTAAAAGAATCAAAAGACATCACAG
GCCAAACAAGTTCGTGTCCCGGGACGGCAATGGGGCACGTAACATCCTAC
GGGTGTACCGCGGCAAGATATGCGGACACTCTATGTGTAGCGTTCCCGCT
GACCTCTTCTTTAATCCTCC

Coding sequence (CDS) from alignment at scaffold_9:576532..578251+

>mRNA_4761 ID=mRNA_4761|Name=jgi.p|Nanoce1779_2|587809|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at scaffold_9:576532..578251+ (Nannochloropsis oceanica)
ATGCGGCCCCTACAAGAGAAAAGATCAAGAGGGACACTCAGCCTCGCGGG
CCAAAAACTTCCGCTTTCCTCCGTTCTCCATCTTCTCATCCTAGCCCTCG
TGCACCATACACTCGCCTTCACTACTTCGCCTCCCATGACGCGAACAAGG
ATGTCTGCTGCTGCTGCTGCTGCGGGTGATCCCTCCGACCCAAGCCGCCT
CCGCCTCGTGACCAACAAAAAATGCCCCTTTGCACAAAAAGCATGGATTG
CCCTCGACGCTTACTATCACAGCAACGGCAAGAGTATCCAGACTGGTAAC
GGCGACATCAGCGGATCCACAGCCATAGCTGCAAGCTCAGGGGGCTACGA
ATTGCTGGAAGTGGGGTTATATGGAGGGAATGGCAAGCCAGGCTGGTTCA
GAGAGATAAGCCCCAAAGGACAGGTACCTGTTTTGTGGTTGCCCAGCGGT
CGTATTATCATTGAGAGTGACGTTATTTTAGACCACCTCACCACCCTCCC
GGAGCCCAACCCTCTGATCCCTCCTTCCCACGAGGCCTACAGACAATGGC
AGGCCATCTTAGTACCATTTCTTAAGACAGCTCGTACAGCTATCGAGCAT
GGGGATGATGCCTCCCTTTTCTCCGCCTTGTCGCAACTCGAGGAACAAAT
TCCCACCCCTGGTCCTTTTTTGGCCGGCGCGACATTTTCTGTGGCAGACT
GCAGTGTCCTACCATTCATGCAGCGGTTAAACGATAAGTACCAGGAGGTG
GTGGAGAAGGCAGCGCCGAGTCTGAATGCATGGTATGCGCTCGCTCAAAA
AGAGCGGTGTTTTCAGGCGACGCGTGTGGGGGAATACTGGATGTGGTGGT
GA

Synonyms

Publications