jgi.p|Nanoce1779_2|658017, mRNA_476 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|658017
Unique NamemRNA_476
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1243
Alignment locationscaffold_3:1156148..1157487 -

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Properties
Property NameValue
TranscriptId658103
TrackFilteredModels2
ProteinId658017
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1156148..1157487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658017gene_476Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658017mRNA_476-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_476CDS_476Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_476 ID=mRNA_476|Name=jgi.p|Nanoce1779_2|658017|organism=Nannochloropsis oceanica|type=mRNA|length=1243bp
ATGCCCGAATCTGAGGCCCTGCAAGAGGAACACCTCGCGAAAGAGACCGC
TCGGCTTGCCGCCAGGGCGCGACGGGATCAAGGTCGCCTAGCACGCTTGC
AAAATGCCAACCGCACGACGATCGTGGACGTGACGGCCCTGGAATTGCAA
ATCGAAGAAAAGCGCCGCCTCAAGGAGCTGGAATTGCTGGCAGCAGCCCG
GGAGGGAAAGCATGTGGCTGAGATGGTGCGACTGCGGGCGGCCCAAGAAG
CGCAAGCAATTGCTGCCCGTCAGGCATTGGCGCGCACTGTCAAAGACGAG
TGGGCATTGCAAGCTGCGGCATGCAAGGATAAGAACAAGAAGGACATAAA
CTTTACGGATTTGCCGGTTGCCAAATGTGGGCGTGGGGCTTTGCAAAAGC
TTGATGGCGAGGACGAGGGGTATAGCGCACGTAAGAAGCAACAGCATGCA
GAGATGCGATCATGGACGCAAGCCCAGAGGCAAGAGCAGCAAGAGCGTAA
ATCGGCAGAGGCCCGCACCCGCGCTCAAGAAGCTGCCCAGTTGCGCCGCG
TTTTGTCCCTGGCCGACCAGCAGGCAGAGGGTGAGGCAGCCCTTCGAACG
TTTTTGACACGGCAGGTTCAAATTGAAAATGCAGCACAGATAGAGCGTCA
TTCTTTGGTAAAGATCCAGCAGCTGAGGCAGAGACAGGAGGAGGAGCAGG
CGCTCTTGGCGCGCATGGGAGTGGACCCGATGCTTTCGGAGGTGAATGAT
TGCGTAAACCACGAGACAGGGCGTATTGTCTCTGATCGCTTCCGAGGATT
TTCAAGTGCACAGCGGCACGCCTTGCTGGAGGAGAATAAAAAAGTTTTGC
AGGAGAAGGCGGCTCGGCAGCAGCAAGAGCAGGAGGATGCACGTGCTTGG
GTCAAGCAGCAGGCGCGGTGGAACGCGCTGATGGAGCAGCAGGAGGAGGA
GGAACGTCATGCCCGGGCAGCACTGCACCAAGAGACTTATGCGACGCTTC
AGCTGCAGAAGCAAGAGCACAAGGTGCGTGATGCCCGAAATAGGGCGGAC
GCTTTTGGTCGGATTGAGGAAGGGCAAGGATTGGTTAGCAAATTCGGGAC
GTCGCTGGCGTGACGAAAAAGGTGAAAGAAAAGTGTCGGTGGATGCGAGA
GATGGGCAAATAACAGGTGTTGAAGGGTTTGGAGCGGCGGGAGAATAGAA
GTATTGGGAAACTGAGAGAAAAAAATGCTTGAAGAAATATGAG
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protein sequence of jgi.p|Nanoce1779_2|658017

>mRNA_476-protein ID=mRNA_476-protein|Name=jgi.p|Nanoce1779_2|658017|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MPESEALQEEHLAKETARLAARARRDQGRLARLQNANRTTIVDVTALELQ
IEEKRRLKELELLAAAREGKHVAEMVRLRAAQEAQAIAARQALARTVKDE
WALQAAACKDKNKKDINFTDLPVAKCGRGALQKLDGEDEGYSARKKQQHA
EMRSWTQAQRQEQQERKSAEARTRAQEAAQLRRVLSLADQQAEGEAALRT
FLTRQVQIENAAQIERHSLVKIQQLRQRQEEEQALLARMGVDPMLSEVND
CVNHETGRIVSDRFRGFSSAQRHALLEENKKVLQEKAARQQQEQEDARAW
VKQQARWNALMEQQEEEERHARAALHQETYATLQLQKQEHKVRDARNRAD
AFGRIEEGQGLVSKFGTSLA*
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mRNA from alignment at scaffold_3:1156148..1157487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_476 ID=mRNA_476|Name=jgi.p|Nanoce1779_2|658017|organism=Nannochloropsis oceanica|type=mRNA|length=1340bp|location=Sequence derived from alignment at scaffold_3:1156148..1157487- (Nannochloropsis oceanica)
ATGCCCGAATCTGAGGCCCTGCAAGAGGAACACCTCGCGAAAGAGACCGC
TCGGCTTGCCGCCAGGGCGCGACGGGATCAAGGTCGCCTAGCACGCTTGC
AAAATGCCAACCGCACGACGATCGTGGACGTGACGGCCCTGGAATTGCAA
ATCGAAGAAAAGCGCCGCCTCAAGGAGCTGGAATTGCTGGCAGCAGCCCG
GGAGGGAAAGCATGTGGCTGAGATGGTGCGACTGCGGGCGGCCCAAGAAG
CGCAAGCAATTGCTGCCCGTCAGGCATTGGCGCGCACTGTCAAAGACGAG
TGGGCATTGCAAGCTGCGGCATGCAAGGATAAGAACAAGAAGGACATAAA
CTTTACGGATTTGCCGGTTGCCAAATGTGGGCGTGGGGCTTTGCAAAAGC
TTGATGGCGAGGACGAGGGGTATAGCGCACGTAAGAAGCAACAGGTAAAT
GAAGGGAGAAGGCGAAGGAAATACACAACAATCATTCTGTAAGCATGAAG
CTCAATTCTCTTGTCTTCTACCTTCTTCAACCATCCGAAAGCATGCAGAG
ATGCGATCATGGACGCAAGCCCAGAGGCAAGAGCAGCAAGAGCGTAAATC
GGCAGAGGCCCGCACCCGCGCTCAAGAAGCTGCCCAGTTGCGCCGCGTTT
TGTCCCTGGCCGACCAGCAGGCAGAGGGTGAGGCAGCCCTTCGAACGTTT
TTGACACGGCAGGTTCAAATTGAAAATGCAGCACAGATAGAGCGTCATTC
TTTGGTAAAGATCCAGCAGCTGAGGCAGAGACAGGAGGAGGAGCAGGCGC
TCTTGGCGCGCATGGGAGTGGACCCGATGCTTTCGGAGGTGAATGATTGC
GTAAACCACGAGACAGGGCGTATTGTCTCTGATCGCTTCCGAGGATTTTC
AAGTGCACAGCGGCACGCCTTGCTGGAGGAGAATAAAAAAGTTTTGCAGG
AGAAGGCGGCTCGGCAGCAGCAAGAGCAGGAGGATGCACGTGCTTGGGTC
AAGCAGCAGGCGCGGTGGAACGCGCTGATGGAGCAGCAGGAGGAGGAGGA
ACGTCATGCCCGGGCAGCACTGCACCAAGAGACTTATGCGACGCTTCAGC
TGCAGAAGCAAGAGCACAAGGTGCGTGATGCCCGAAATAGGGCGGACGCT
TTTGGTCGGATTGAGGAAGGGCAAGGATTGGTTAGCAAATTCGGGACGTC
GCTGGCGTGACGAAAAAGGTGAAAGAAAAGTGTCGGTGGATGCGAGAGAT
GGGCAAATAACAGGTGTTGAAGGGTTTGGAGCGGCGGGAGAATAGAAGTA
TTGGGAAACTGAGAGAAAAAAATGCTTGAAGAAATATGAG
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Coding sequence (CDS) from alignment at scaffold_3:1156148..1157487-

>mRNA_476 ID=mRNA_476|Name=jgi.p|Nanoce1779_2|658017|organism=Nannochloropsis oceanica|type=CDS|length=2226bp|location=Sequence derived from alignment at scaffold_3:1156148..1157487- (Nannochloropsis oceanica)
CATGCAGAGATGCGATCATGGACGCAAGCCCAGAGGCAAGAGCAGCAAGA
GCGTAAATCGGCAGAGGCCCGCACCCGCGCTCAAGAAGCTGCCCAGTTGC
GCCGCGTTTTGTCCCTGGCCGACCAGCAGGCAGAGGGTGAGGCAGCCCTT
CGAACGTTTTTGACACGGCAGGTTCAAATTGAAAATGCAGCACAGATAGA
GCGTCATTCTTTGGTAAAGATCCAGCAGCTGAGGCAGAGACAGGAGGAGG
AGCAGGCGCTCTTGGCGCGCATGGGAGTGGACCCGATGCTTTCGGAGGTG
AATGATTGCGTAAACCACGAGACAGGGCGTATTGTCTCTGATCGCTTCCG
AGGATTTTCAAGTGCACAGCGGCACGCCTTGCTGGAGGAGAATAAAAAAG
TTTTGCAGGAGAAGGCGGCTCGGCAGCAGCAAGAGCAGGAGGATGCACGT
GCTTGGGTCAAGCAGCAGGCGCGGTGGAACGCGCTGATGGAGCAGCAGGA
GGAGGAGGAACGTCATGCCCGGGCAGCACTGCACCAAGAGACTTATGCGA
CGCTTCAGCTGCAGAAGCAAGAGCACAAGGTGCGTGATGCCCGAAATAGG
GCGGACGCTTTTGGTCGGATTGAGGAAGGGCAAGGATTGGTTAGCAAATT
CGGGACGTCGCTGGCGTGAATGCCCGAATCTGAGGCCCTGCAAGAGGAAC
ACCTCGCGAAAGAGACCGCTCGGCTTGCCGCCAGGGCGCGACGGGATCAA
GGTCGCCTAGCACGCTTGCAAAATGCCAACCGCACGACGATCGTGGACGT
GACGGCCCTGGAATTGCAAATCGAAGAAAAGCGCCGCCTCAAGGAGCTGG
AATTGCTGGCAGCAGCCCGGGAGGGAAAGCATGTGGCTGAGATGGTGCGA
CTGCGGGCGGCCCAAGAAGCGCAAGCAATTGCTGCCCGTCAGGCATTGGC
GCGCACTGTCAAAGACGAGTGGGCATTGCAAGCTGCGGCATGCAAGGATA
AGAACAAGAAGGACATAAACTTTACGGATTTGCCGGTTGCCAAATGTGGG
CGTGGGGCTTTGCAAAAGCTTGATGGCGAGGACGAGGGGTATAGCGCACG
TAAGAAGCAACAGCATGCAGAGATGCGATCATGGACGCAAGCCCAGAGGC
AAGAGCAGCAAGAGCGTAAATCGGCAGAGGCCCGCACCCGCGCTCAAGAA
GCTGCCCAGTTGCGCCGCGTTTTGTCCCTGGCCGACCAGCAGGCAGAGGG
TGAGGCAGCCCTTCGAACGTTTTTGACACGGCAGGTTCAAATTGAAAATG
CAGCACAGATAGAGCGTCATTCTTTGGTAAAGATCCAGCAGCTGAGGCAG
AGACAGGAGGAGGAGCAGGCGCTCTTGGCGCGCATGGGAGTGGACCCGAT
GCTTTCGGAGGTGAATGATTGCGTAAACCACGAGACAGGGCGTATTGTCT
CTGATCGCTTCCGAGGATTTTCAAGTGCACAGCGGCACGCCTTGCTGGAG
GAGAATAAAAAAGTTTTGCAGGAGAAGGCGGCTCGGCAGCAGCAAGAGCA
GGAGGATGCACGTGCTTGGGTCAAGCAGCAGGCGCGGTGGAACGCGCTGA
TGGAGCAGCAGGAGGAGGAGGAACGTCATGCCCGGGCAGCACTGCACCAA
GAGACTTATGCGACGCTTCAGCTGCAGAAGCAAGAGCACAAGGTGCGTGA
TGCCCGAAATAGGGCGGACGCTTTTGGTCGGATTGAGGAAGGGCAAGGAT
TGGTTAGCAAATTCGGGACGTCGCTGGCGTGAATGCCCGAATCTGAGGCC
CTGCAAGAGGAACACCTCGCGAAAGAGACCGCTCGGCTTGCCGCCAGGGC
GCGACGGGATCAAGGTCGCCTAGCACGCTTGCAAAATGCCAACCGCACGA
CGATCGTGGACGTGACGGCCCTGGAATTGCAAATCGAAGAAAAGCGCCGC
CTCAAGGAGCTGGAATTGCTGGCAGCAGCCCGGGAGGGAAAGCATGTGGC
TGAGATGGTGCGACTGCGGGCGGCCCAAGAAGCGCAAGCAATTGCTGCCC
GTCAGGCATTGGCGCGCACTGTCAAAGACGAGTGGGCATTGCAAGCTGCG
GCATGCAAGGATAAGAACAAGAAGGACATAAACTTTACGGATTTGCCGGT
TGCCAAATGTGGGCGTGGGGCTTTGCAAAAGCTTGATGGCGAGGACGAGG
GGTATAGCGCACGTAAGAAGCAACAG
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Synonyms
Publications