jgi.p|Nanoce1779_2|587801, mRNA_4759 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587801
Unique NamemRNA_4759
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1349
Alignment locationscaffold_9:572974..574361 -

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Properties
Property NameValue
TranscriptId587887
TrackFilteredModels2
ProteinId587801
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:572974..574361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587801gene_4759Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587801mRNA_4759-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4759CDS_4759Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4759 ID=mRNA_4759|Name=jgi.p|Nanoce1779_2|587801|organism=Nannochloropsis oceanica|type=mRNA|length=1349bp
CAGGCGCCCCCCACTCTGTACCCTAGGCCCTCCTCTTCAGAACATCATGT
CTCCTAGGAACACCATGTCTATCGGTCGGCGTGCACCCCAGCAAAGGAAT
TTTTTGAAGTACATGCGATAAGAGGAGAGGATGCCTCTGCTGAAACGGGA
GGATGGAGTGATTGAGGAGACATGGAAGCAGCACTTGGCTCACGGCATCC
AGTGCATCATGGAGCGTCAAGACGTCTATGGAGGTGTGCAAATTACCGCT
TGGGATGGCGTCCTCGATACAGCCGAAGGCGCCATGCTGCTGCTCAACCT
GCTGGACCACTGAACGTGTATGACACAAAGCCACCCCCAAAATAAGCCTT
ATGCCTGCCTACGTCGCCAGGCAACTTCGCTCTGCTCTTTCGCTGTCTTC
CCGGAACAAAGGGACATATACCTCACGATCTCCCGCGAAGTCCTTCGTGA
AGACGAAGTGTTGAAGTAGCGAGATGGCACGACAAGGACTTGGCGGCCAT
GTGCGTGATTCAGATTTTGTTGGGAGGTGGAGATTCCTTCTCGGCTGGAG
GGCCGGGGAAGGGGATGTATTCACGGTTGTACCAGGCCTTTGTGAATTTA
CATAACGAGACAGGGGTGTTAGGGATCGCCGGTGCGTGTGACGCAGGGCG
GGCAGGGCAGTTAATGCATGAGTTTTGTGCGCAGATTTGCAAGCTGGCCT
TGACGCCTGTGGATCCTGTGGAGTTATCAAGGGCGCGAAATATGTTAAAG
TGCAATGTCTTGACGCAATTGGAGTCTAGGATCATTTTATTTGAGGATTT
GGGGAGGCAATTCGTGACCTATGGCCATCGGGAGGCGCCTGAGGCATTGT
GTCGAAAGATTGATGAGGTCAAGGCAGAGGACGTGATGAACATTGCCCGA
CGGGCTATTTCTAAGCCAGTGTCGATTTCGGCTGTGGGTAAGGACTTAAA
GAATGTGCCAAATTATGATCAGGTCTTACAATGGTTTGCACAATCATAGG
AAGAGGGGTGGGATGGAGGGAGGTAGAGAGGGAGAGGGACCGAAGGAGAG
AGGTAGGGTAAGGAACCGTTAGTGTGTAAGTAGGTGCGCAGGAAGGATAT
GAAAGGAATAATCAAAAGTGTGGTGTTGGAAAGAACGAAATGGAATGCAA
TTCATGAGCTTTGTCTTTTCTCTGTTTCCCTTGTCCCCTCTGCCCATAGG
TAGAGGAAGGTGTGGTTGTGGGGGAGCGGCGGTTGGGGGCGAGTCCAAGG
CACCCGAAATATTAGACAAACCCGTCTTTCCTCTTAATAGCCTCTTAATA
GAAGGGGTTGGTGAAGATATGGTTCGTAGACTCGAAGGTATGTTGGGGG
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protein sequence of jgi.p|Nanoce1779_2|587801

>mRNA_4759-protein ID=mRNA_4759-protein|Name=jgi.p|Nanoce1779_2|587801|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MCVIQILLGGGDSFSAGGPGKGMYSRLYQAFVNLHNETGVLGIAGACDAG
RAGQLMHEFCAQICKLALTPVDPVELSRARNMLKCNVLTQLESRIILFED
LGRQFVTYGHREAPEALCRKIDEVKAEDVMNIARRAISKPVSISAVGKDL
KNVPNYDQVLQWFAQS*
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mRNA from alignment at scaffold_9:572974..574361-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4759 ID=mRNA_4759|Name=jgi.p|Nanoce1779_2|587801|organism=Nannochloropsis oceanica|type=mRNA|length=1388bp|location=Sequence derived from alignment at scaffold_9:572974..574361- (Nannochloropsis oceanica)
CAGGCGCCCCCCACTCTGTACCCTAGGCCCTCCTCTTCAGAACATCATGT
CTCCTAGGAACACCATGTCTATCGGTCGGCGTGCACCCCAGCAAAGGAAT
TTTTTGAAGTACATGCGATAAGAGGAGAGGATGCCTCTGCTGAAACGGGA
GGATGGAGTGATTGAGGAGACATGGAAGCAGCACTTGGCTCACGGCATCC
AGTGCATCATGGAGCGTCAAGACGTCTATGGAGGTGTGCAAATTACCGCT
TGGGATGGCGTCCTCGATACAGCCGAAGGCGCCATGCTGCTGCTCAACCT
GCTGGACCACTGAACGTGTATGACACAAAGCCACCCCCAAAATAAGCCTT
ATGCCTGCCTACGTCGCCAGGCAACTTCGCTCTGCTCTTTCGCTGTCTTC
CCGGAACAAAGGGACATATACCTCACGATCTCCCGCGAAGTCCTTCGTGA
AGACGAAGTGTTGAAGTAGCGAGATGGCACGACAAGGACTTGGCGGCCAT
GTGCGTGATTCAGATTTTGTTGGGAGGTGGAGATTCCTTCTCGGCTGGAG
GGCCGGGGAAGGGGATGTATTCACGGTTGTACCGTGAGTTGCTTAATCGA
TAATATTGGGTGGAGGGTGCAGAGGCCTTTGTGAATTTACATAACGAGAC
AGGGGTGTTAGGGATCGCCGGTGCGTGTGACGCAGGGCGGGCAGGGCAGT
TAATGCATGAGTTTTGTGCGCAGATTTGCAAGCTGGCCTTGACGCCTGTG
GATCCTGTGGAGTTATCAAGGGCGCGAAATATGTTAAAGTGCAATGTCTT
GACGCAATTGGAGTCTAGGATCATTTTATTTGAGGATTTGGGGAGGCAAT
TCGTGACCTATGGCCATCGGGAGGCGCCTGAGGCATTGTGTCGAAAGATT
GATGAGGTCAAGGCAGAGGACGTGATGAACATTGCCCGACGGGCTATTTC
TAAGCCAGTGTCGATTTCGGCTGTGGGTAAGGACTTAAAGAATGTGCCAA
ATTATGATCAGGTCTTACAATGGTTTGCACAATCATAGGAAGAGGGGTGG
GATGGAGGGAGGTAGAGAGGGAGAGGGACCGAAGGAGAGAGGTAGGGTAA
GGAACCGTTAGTGTGTAAGTAGGTGCGCAGGAAGGATATGAAAGGAATAA
TCAAAAGTGTGGTGTTGGAAAGAACGAAATGGAATGCAATTCATGAGCTT
TGTCTTTTCTCTGTTTCCCTTGTCCCCTCTGCCCATAGGTAGAGGAAGGT
GTGGTTGTGGGGGAGCGGCGGTTGGGGGCGAGTCCAAGGCACCCGAAATA
TTAGACAAACCCGTCTTTCCTCTTAATAGCCTCTTAATAGAAGGGGTTGG
TGAAGATATGGTTCGTAGACTCGAAGGTATGTTGGGGG
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Coding sequence (CDS) from alignment at scaffold_9:572974..574361-

>mRNA_4759 ID=mRNA_4759|Name=jgi.p|Nanoce1779_2|587801|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_9:572974..574361- (Nannochloropsis oceanica)
AGGCCTTTGTGAATTTACATAACGAGACAGGGGTGTTAGGGATCGCCGGT
GCGTGTGACGCAGGGCGGGCAGGGCAGTTAATGCATGAGTTTTGTGCGCA
GATTTGCAAGCTGGCCTTGACGCCTGTGGATCCTGTGGAGTTATCAAGGG
CGCGAAATATGTTAAAGTGCAATGTCTTGACGCAATTGGAGTCTAGGATC
ATTTTATTTGAGGATTTGGGGAGGCAATTCGTGACCTATGGCCATCGGGA
GGCGCCTGAGGCATTGTGTCGAAAGATTGATGAGGTCAAGGCAGAGGACG
TGATGAACATTGCCCGACGGGCTATTTCTAAGCCAGTGTCGATTTCGGCT
GTGGGTAAGGACTTAAAGAATGTGCCAAATTATGATCAGGTCTTACAATG
GTTTGCACAATCATAGATGTGCGTGATTCAGATTTTGTTGGGAGGTGGAG
ATTCCTTCTCGGCTGGAGGGCCGGGGAAGGGGATGTATTCACGGTTGTAC
CAGGCCTTTGTGAATTTACATAACGAGACAGGGGTGTTAGGGATCGCCGG
TGCGTGTGACGCAGGGCGGGCAGGGCAGTTAATGCATGAGTTTTGTGCGC
AGATTTGCAAGCTGGCCTTGACGCCTGTGGATCCTGTGGAGTTATCAAGG
GCGCGAAATATGTTAAAGTGCAATGTCTTGACGCAATTGGAGTCTAGGAT
CATTTTATTTGAGGATTTGGGGAGGCAATTCGTGACCTATGGCCATCGGG
AGGCGCCTGAGGCATTGTGTCGAAAGATTGATGAGGTCAAGGCAGAGGAC
GTGATGAACATTGCCCGACGGGCTATTTCTAAGCCAGTGTCGATTTCGGC
TGTGGGTAAGGACTTAAAGAATGTGCCAAATTATGATCAGGTCTTACAAT
GGTTTGCACAATCATAGATGTGCGTGATTCAGATTTTGTTGGGAGGTGGA
GATTCCTTCTCGGCTGGAGGGCCGGGGAAGGGGATGTATTCACGGTTGTA
CC
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Synonyms
Publications