jgi.p|Nanoce1779_2|587775, mRNA_4756 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587775
Unique Name	mRNA_4756
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2354
Alignment location	scaffold_9:557117..559741 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587861
Track	FilteredModels2
ProteinId	587775

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:557117..559741 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587775	gene_4756	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587775	mRNA_4756-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4756	CDS_4756	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:557117..559741+
coding sequence from alignment at scaffold_9:557117..559741+

mRNA sequence

>mRNA_4756 ID=mRNA_4756|Name=jgi.p|Nanoce1779_2|587775|organism=Nannochloropsis oceanica|type=mRNA|length=2354bp
AGACAGGGAGGGTGTAGACAGTGTCACAGCACCGGATCGCTGTCTTCAGC
TTTCAAAACGTATCGCCTAACAAATTCGAGCGATTGCGTGGAGCCCCTGG
TTGAGTCGAACTCATGACTACATCCACAACTCACGCCGCGGTCGCCTTAG
AGACATGTCGCCGCGATGCCAGCTTTCTGCTGGTGGATGCGCTGTGGGGC
TGCTCCAACGCCGTCATCAGGCACGCCACGGAGACTGGCAGCAGCACCAG
CAGCAGGAGCAGAAAGGAGCAGGCCGGGATGATGGCGGGTCTCAAGGCAC
TCATTGGGACCAAGGCGGCGCGGCGGACATAAGCTCGGCCGTCCCTCTTT
GCAACTCCTTGACCTTCGCCTTCACAGCTCTCACCTCCCACCAGCTGGGT
GAGCGCGTCGACGACCCTTTCCGTGCTGCCCTAGGTGTTGTCCTTGTTCT
CCTTGGGGTCTCCTTGTGCGTCGCAAGCAAGTGACAAATTATAGTCTTCC
TCCCTACACTCCTCCTTCTGATGCTGCTCAACTTTCCGACGGTTGCCTTT
CTCTTCTTTCTTGTCCTCCTGCTGCTGCTCCAGCCGACGACCACCCCGCG
CTATTTCATGATCTTGTGCCGGGATGTAGGGAATGACAATTGCAGTAGCA
GCAGTAGCAGCAGCAGTAGCGGTAGCAGAAGCATCAGCACCAGCAATAGC
AGTAGCAAGTGAAGCAGCAGCCACGACCGATGACGCTGACGCAGTAGCAG
CAGTAACAGTAGTAGTAGAAGCAGAAAGAGTCGCCGCAGCACCAACACTA
TGCATCTTCATGTAGCTGGCCTCCTCTACCCTTAAGGACGTATCCATCGC
TCGGGCTTTCTTCTTTAACTCCTCCAACCTCGCTTTCTTGGTCTCTACCT
GCTGCAGCACTCTCATCTTGACCCCCCTCTGTTGGTGCAAGGCCTTTTTT
TGTCCCACCATTGCCTCATGCGCAGCCACCAACTTCGCCGTCTCCGCGCC
CCGGAGATGATTCTGGCGGATCAAACGAGATTTCTCCTCTTGTTTCTCCT
CGAGTTGTTCTAGAAGCTTCCAGGTTTTCGCTTCCATCAGGAGGTTCAAA
CGGCGGAGCAAGCGAAGCTGGACCTCACTCTCTAAACCCTTGGATTCCAA
TTTAGCCCCTCCACTCAGCAGCGCTCTTAGAACACTGTCAGCAGCTGCAG
CAGCAGCAACAGTAGCACCAGCGTCAGTAACAGCGTCAGCAGGAGCGTTG
TCACCGTCGTTGTTCTCTTGCTGGGTGGCGGTGATGGTGGTGGCGCTGTT
GCTGCCGTTGGTCTGCTGTTGCTGTCGCTCTTGGTCGTGGTAATGGTCAT
AGTAGAGGGCAAAGAGGGATTGCAGTTCTTGGTTGGCGTTTGTGACTGTA
TCGACCTGCACCTGAGAGTCGAGTAGCTGGAGGTTTGCCTGTTATGTGGG
TCGAACAGAAAAGAGTCAGTAGATGCATGGGGAAAATAAAAATAAGAGGA
GGAGCGATGACGAGGCACGACGGAAGGAGATTTGGGGAAAGAGGAAGAAG
GAGAAGAAGAAGCAGAAGAAGAAGCAGGACGCGGAGAAAAAGGAGGAGGA
GGAGGGCGATGAGGAGGAAGAGAAAAAGGAGAAGGAGGAGGATGAGGATG
AGGATGAAGAGGGGCAAGAGGAAAGAAGAAGAGGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGGATGAGGAGGAGGATGAAGAG
GATGATGATGAGAAGGATGAGGAGGAGGAGGAGGAGTTGGCGGTGACGGC
GGAGGCTCAGGGGGGAAAGCTACAAGACGTGCAGCGAGTCTGGGATAGCA
CCCATCTCTGCTCTTTCTGCCTACTCGTACATATTTAGCTGCGCATACTT
ATACGTACATCTATGCATAATACTCACCTGCTGCAGCTGCATGTTAAGGA
CGGCGGCCTTGCGTTTGAGGAGCTGCTTTGCCTGGCGGAAGACAACAAGG
TCCTCCTGCATGGATTGGGCCTCTCGCTTCTTACATTCGAGCGCACGCAG
CTTCTCTGTGGGTGCGAGTAATGGGGAGAGAGGAGGATGACTGTGATGAG
GATCAGGAATGGAGTAAGTTTGTGCGCACGCGGATGAGGAGCAGGGTAGG
ATTGAGTTGTGGTTGCGGGGCAATAGGAAATACAATAACACGCAAGATTC
AATGCACTTGCCTTTGTGTTCGCATTGCATCGACTCAATCTTGCTCTCCA
GGCCTTGAAAGGCCGCTGTTGCAGCGCCGCTCCTGCCTGGCGCGCGTGGT
GGGAGGGAGGAAGAGGGGGGGGAGAAGGAGGTGGAGGAGGAGGCCATGCT
GCTG

protein sequence of jgi.p|Nanoce1779_2|587775

>mRNA_4756-protein ID=mRNA_4756-protein|Name=jgi.p|Nanoce1779_2|587775|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MSPRCQLSAGGCAVGLLQRRHQARHGDWQQHQQQEQKGAGRDDGGSQGTH
WDQGGAADISSAVPLCNSLTFAFTALTSHQLGERVDDPFRAALGVVLVLL
GVSLCVASK*

mRNA from alignment at scaffold_9:557117..559741+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4756 ID=mRNA_4756|Name=jgi.p|Nanoce1779_2|587775|organism=Nannochloropsis oceanica|type=mRNA|length=2625bp|location=Sequence derived from alignment at scaffold_9:557117..559741+ (Nannochloropsis oceanica)
AGACAGGGAGGGTGTAGACAGTGTCACAGCACCGGATCGCTGTCTTCAGC
TTTCAAAACGTATCGCCTAACAAATTCGAGCGATTGCGTGGAGCCCCTGG
TTGAGTCGAACTCATGACTACATCCACAACTCACGCCGCGGTCGCCTTAG
AGACATGTCGCCGCGATGCCAGCTTTCTGCTGGTGGATGCGCTGTGGGGC
TGCTCCAACGCCGTCATCAGGCACGCCACGGAGACTGGCAGCAGCACCAG
CAGCAGGAGCAGAAAGGAGCAGGCCGGGATGATGGCGGGTCTCAAGGCAC
TCATTGGGACCAAGGTAAGACAAGACAATAGCGGAAGGAAATGCGACATA
AAGCAATGGAGAAACAACTTTTATCGCGTCCTTTCTCACCTCCTTTTTTT
TTCTCTTCTTTCTTCTGTCCAGGCGGCGCGGCGGGTGAGTCCCACCGTTC
CCTCCTTCTCTCCCTCCCTCCCTCCCGCCCTCTTCCTCCATACCCCCTCC
CCCTTCCTCCTTTTTGAACAGCTGGTTATTTTTGGCAGCAAGTTCACACT
CATACATGCGCAAACAACCAAACTTCATATTACCACACATATCATAGACA
TAAGCTCGGCCGTCCCTCTTTGCAACTCCTTGACCTTCGCCTTCACAGCT
CTCACCTCCCACCAGCTGGGTGAGCGCGTCGACGACCCTTTCCGTGCTGC
CCTAGGTGTTGTCCTTGTTCTCCTTGGGGTCTCCTTGTGCGTCGCAAGCA
AGTGACAAATTATAGTCTTCCTCCCTACACTCCTCCTTCTGATGCTGCTC
AACTTTCCGACGGTTGCCTTTCTCTTCTTTCTTGTCCTCCTGCTGCTGCT
CCAGCCGACGACCACCCCGCGCTATTTCATGATCTTGTGCCGGGATGTAG
GGAATGACAATTGCAGTAGCAGCAGTAGCAGCAGCAGTAGCGGTAGCAGA
AGCATCAGCACCAGCAATAGCAGTAGCAAGTGAAGCAGCAGCCACGACCG
ATGACGCTGACGCAGTAGCAGCAGTAACAGTAGTAGTAGAAGCAGAAAGA
GTCGCCGCAGCACCAACACTATGCATCTTCATGTAGCTGGCCTCCTCTAC
CCTTAAGGACGTATCCATCGCTCGGGCTTTCTTCTTTAACTCCTCCAACC
TCGCTTTCTTGGTCTCTACCTGCTGCAGCACTCTCATCTTGACCCCCCTC
TGTTGGTGCAAGGCCTTTTTTTGTCCCACCATTGCCTCATGCGCAGCCAC
CAACTTCGCCGTCTCCGCGCCCCGGAGATGATTCTGGCGGATCAAACGAG
ATTTCTCCTCTTGTTTCTCCTCGAGTTGTTCTAGAAGCTTCCAGGTTTTC
GCTTCCATCAGGAGGTTCAAACGGCGGAGCAAGCGAAGCTGGACCTCACT
CTCTAAACCCTTGGATTCCAATTTAGCCCCTCCACTCAGCAGCGCTCTTA
GAACACTGTCAGCAGCTGCAGCAGCAGCAACAGTAGCACCAGCGTCAGTA
ACAGCGTCAGCAGGAGCGTTGTCACCGTCGTTGTTCTCTTGCTGGGTGGC
GGTGATGGTGGTGGCGCTGTTGCTGCCGTTGGTCTGCTGTTGCTGTCGCT
CTTGGTCGTGGTAATGGTCATAGTAGAGGGCAAAGAGGGATTGCAGTTCT
TGGTTGGCGTTTGTGACTGTATCGACCTGCACCTGAGAGTCGAGTAGCTG
GAGGTTTGCCTGTTATGTGGGTCGAACAGAAAAGAGTCAGTAGATGCATG
GGGAAAATAAAAATAAGAGGAGGAGCGATGACGAGGCACGACGGAAGGAG
ATTTGGGGAAAGAGGAAGAAGGAGAAGAAGAAGCAGAAGAAGAAGCAGGA
CGCGGAGAAAAAGGAGGAGGAGGAGGGCGATGAGGAGGAAGAGAAAAAGG
AGAAGGAGGAGGATGAGGATGAGGATGAAGAGGGGCAAGAGGAAAGAAGA
AGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
GATGAGGAGGAGGATGAAGAGGATGATGATGAGAAGGATGAGGAGGAGGA
GGAGGAGTTGGCGGTGACGGCGGAGGCTCAGGGGGGAAAGCTACAAGACG
TGCAGCGAGTCTGGGATAGCACCCATCTCTGCTCTTTCTGCCTACTCGTA
CATATTTAGCTGCGCATACTTATACGTACATCTATGCATAATACTCACCT
GCTGCAGCTGCATGTTAAGGACGGCGGCCTTGCGTTTGAGGAGCTGCTTT
GCCTGGCGGAAGACAACAAGGTCCTCCTGCATGGATTGGGCCTCTCGCTT
CTTACATTCGAGCGCACGCAGCTTCTCTGTGGGTGCGAGTAATGGGGAGA
GAGGAGGATGACTGTGATGAGGATCAGGAATGGAGTAAGTTTGTGCGCAC
GCGGATGAGGAGCAGGGTAGGATTGAGTTGTGGTTGCGGGGCAATAGGAA
ATACAATAACACGCAAGATTCAATGCACTTGCCTTTGTGTTCGCATTGCA
TCGACTCAATCTTGCTCTCCAGGCCTTGAAAGGCCGCTGTTGCAGCGCCG
CTCCTGCCTGGCGCGCGTGGTGGGAGGGAGGAAGAGGGGGGGGAGAAGGA
GGTGGAGGAGGAGGCCATGCTGCTG

Coding sequence (CDS) from alignment at scaffold_9:557117..559741+

>mRNA_4756 ID=mRNA_4756|Name=jgi.p|Nanoce1779_2|587775|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_9:557117..559741+ (Nannochloropsis oceanica)
ATGTCGCCGCGATGCCAGCTTTCTGCTGGTGGATGCGCTGTGGGGCTGCT
CCAACGCCGTCATCAGGCACGCCACGGAGACTGGCAGCAGCACCAGCAGC
AGGAGCAGAAAGGAGCAGGCCGGGATGATGGCGGGTCTCAAGGCACTCAT
TGGGACCAAGGCGGCGCGGCGGACATAAGCTCGGCCGTCCCTCTTTGCAA
CTCCTTGACCTTCGCCTTCACAGCTCTCACCTCCCACCAGCTGGGTGAGC
GCGTCGACGACCCTTTCCGTGCTGCCCTAGGTGTTGTCCTTGTTCTCCTT
GGGGTCTCCTTGTGCGTCGCAAGCAAGTGAATGTCGCCGCGATGCCAGCT
TTCTGCTGGTGGATGCGCTGTGGGGCTGCTCCAACGCCGTCATCAGGCAC
GCCACGGAGACTGGCAGCAGCACCAGCAGCAGGAGCAGAAAGGAGCAGGC
CGGGATGATGGCGGGTCTCAAGGCACTCATTGGGACCAAGGCGGCGCGGC
GGACATAAGCTCGGCCGTCCCTCTTTGCAACTCCTTGACCTTCGCCTTCA
CAGCTCTCACCTCCCACCAGCTGGGTGAGCGCGTCGACGACCCTTTCCGT
GCTGCCCTAGGTGTTGTCCTTGTTCTCCTTGGGGTCTCCTTGTGCGTCGC
AAGCAAGTGAATGTCGCCGCGATGCCAGCTTTCTGCTGGTGGATGCGCTG
TGGGGCTGCTCCAACGCCGTCATCAGGCACGCCACGGAGACTGGCAGCAG
CACCAGCAGCAGGAGCAGAAAGGAGCAGGCCGGGATGATGGCGGGTCTCA
AGGCACTCATTGGGACCAAGGCGGCGCGGCGGACATAAGCTCGGCCGTCC
CTCTTTGCAACTCCTTGACCTTCGCCTTCACAGCTCTCACCTCCCACCAG
CTGGGTGAGCGCGTCGACGACCCTTTCCGTGCTGCCCTAGGTGTTGTCCT
TGTTCTCCTTGGGGTCTCCTTGTGCGTCGCAAGCAAGTGA

Synonyms

Publications