jgi.p|Nanoce1779_2|587770, mRNA_4755 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587770
Unique Name	mRNA_4755
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	919
Alignment location	scaffold_9:555504..556937 +

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Properties


Property Name	Value
TranscriptId	587856
Track	FilteredModels2
ProteinId	587770

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:555504..556937 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587770	gene_4755	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587770	mRNA_4755-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4755	CDS_4755	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:555504..556937+
coding sequence from alignment at scaffold_9:555504..556937+

mRNA sequence

>mRNA_4755 ID=mRNA_4755|Name=jgi.p|Nanoce1779_2|587770|organism=Nannochloropsis oceanica|type=mRNA|length=919bp
CAGGCAGACATGTTCCGCAACCAGTACGATACCGATGTTACTGTGTGGAG
TCCTCAGGGCCGGCTGCATCAAGTGGAGTACGCGTTGGAGGCGGTCAAGC
AGGGTGCCTGTGCCCTCGGCCTGCGCTCCAAGGACTTCGTCGTTCTAGCG
GCCCTCAAGCGTTCGGCCAATGAACTGTCGTCATACCAAAAGAAGATTTT
CAAGGTGGACGATCATATCGGGATTGCCATTTCGGGCTTGACTGCCGATG
CCCGCTCTTTGGCCAAGTACATGCGGACCGAGGCCTTGAACCATAAGTAC
GTCTATGGCAGCGCTTTACAGGCCAGCCGGTTGGTGTTGAATGTTGCAGA
CAAGCATCAGCGATGCACTCAGTCTTATGTTCGACGGCCGTATGGTGTGG
GGCTATTGATTGCTTCCTACGACCAGACTGGCCCCCACCTCTTCCAAACC
GACCCCTCGGGTGCCTACTACGAATATATTGCCCAAGCCATCGGCTCGCG
CGCGCAATCCGGCAAGACATATCTAGAGAAGTATTATGCGGAGTTTGAGG
AGCTGGGTGTGGATGATTTGATCAAGCATGCGTTGAAGGCGCTTTCGGGG
ACGACGGGAGACAAGGAGCTGGATAAGGACAATGCTTCGGTAGCTGTGGT
GGGGAAAGATCATCCGTTACAGATCATTGAGGGAGAGGAGCTGCAAAAGT
ACTTGGATGCGGTCGAGGTGGAGGGCAATGCCGGCGGGACGGCGGCGGGT
GAGGAGGCGATGGAGCTGGCGTCGGAGGGAGAGAGTATGAGCACGTCGTA
AATTGTGTGTGGGACAGGGGAGAGGAGGGGGATGCTTGGAAGTGGTAGGT
AAAGGAGGGCATTCGTAGAAGGGTCCAAGGCGGAAGAAGAAAAAGAAGAA
AAAAATATTGTTCGCTCGA

protein sequence of jgi.p|Nanoce1779_2|587770

>mRNA_4755-protein ID=mRNA_4755-protein|Name=jgi.p|Nanoce1779_2|587770|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MFRNQYDTDVTVWSPQGRLHQVEYALEAVKQGACALGLRSKDFVVLAALK
RSANELSSYQKKIFKVDDHIGIAISGLTADARSLAKYMRTEALNHKYVYG
SALQASRLVLNVADKHQRCTQSYVRRPYGVGLLIASYDQTGPHLFQTDPS
GAYYEYIAQAIGSRAQSGKTYLEKYYAEFEELGVDDLIKHALKALSGTTG
DKELDKDNASVAVVGKDHPLQIIEGEELQKYLDAVEVEGNAGGTAAGEEA
MELASEGESMSTS*

mRNA from alignment at scaffold_9:555504..556937+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4755 ID=mRNA_4755|Name=jgi.p|Nanoce1779_2|587770|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp|location=Sequence derived from alignment at scaffold_9:555504..556937+ (Nannochloropsis oceanica)
CAGGCAGACATGTTCCGCAACCAGTACGATACCGATGTTACTGTGTGGAG
TCCTCAGGGCCGGCTGCATCAAGTGGAGTACGCGTTGGAGGCGGTCAAGC
AGGTATGTAGAGGACTGCAAAAGGATAGGAGGCTAGCAAATAGTCATGTC
GGGGAGATTGTCGTGTACATGTAGTGGAGGGGATGTCACAGCACCACGGC
ACAATAAAGAAAGATATCTTAACGTAGGGATGAGTACCAAAGATATTTAG
GAGGCTGCGGTTTGGAGCCAGATAATTAGACGCTCACTCTCCCCCTTCCC
TCAACTTCCCCTCTCCCTCCCCTGATAGGGTGCCTGTGCCCTCGGCCTGC
GCTCCAAGGACTTCGTCGTTCTAGCGGCCCTCAAGCGTTCGGCCAATGAA
CTGTCGTCATACCAAAAGAAGATTTTCAAGGTGGACGATCATATCGGGAT
TGCCATTTCGGGCTTGACTGCCGATGCCCGCTCTTTGGCCAAGTACATGC
GGACCGAGGCCTTGAACCATAAGTACGTCTATGGCAGCGCTTTACAGGCC
AGCCGGTTGGTGTTGAATGTTGCAGACAAGCATCAGCGATGCACTCAGTC
TTATGTTCGACGGCCGTATGGTGTGGGGCTATTGGTACGTGGTGGGGAAA
AGAGGGAAGGAGGAATTGAGGAAGTACGGGGTTTTGACTTCGGTCTTTCT
GTAAATATAAGGCCTGCTATGCCATGCCCTACACCCCCGTGGACTCACAT
CCGAAGTATGTTCTCACCTTTCCTCCTCCTTTCCTTCCATTACAGATTGC
TTCCTACGACCAGACTGGCCCCCACCTCTTCCAAACCGACCCCTCGGGTG
CCTACTACGAATATATTGCCCAAGCCATCGGCTCGCGCGCGCAATCCGGC
AAGACATATCTAGAGAAGTATTATGCGGAGTTTGAGGAGCTGGGTGTGGA
TGATTTGATCAAGCATGCGTTGAAGGCGCTTTCGGGGACGACGGGTAAGT
GTAGAGGATGGGGAGGGAGGAAAGGAGGAAAGGAAGGGAGGATATTATTC
ATTGAGGTCCAATGTCGTGTCTAGAGTCGTACAGATGACTCATCATAGAA
CTCATGACAATCACACTGGTAGGAGACAAGGAGCTGGATAAGGACAATGC
TTCGGTAGCTGTGGTGGGGAAAGATCATCCGTTACAGATCATTGAGGGAG
AGGAGCTGCAAAAGTACTTGGATGCGGTCGAGGTGGAGGGCAATGCCGGC
GGGACGGCGGCGGGTGAGGAGGCGATGGAGCTGGCGTCGGAGGGAGAGAG
TATGAGCACGTCGTAAATTGTGTGTGGGACAGGGGAGAGGAGGGGGATGC
TTGGAAGTGGTAGGTAAAGGAGGGCATTCGTAGAAGGGTCCAAGGCGGAA
GAAGAAAAAGAAGAAAAAAATATTGTTCGCTCGA

Coding sequence (CDS) from alignment at scaffold_9:555504..556937+

>mRNA_4755 ID=mRNA_4755|Name=jgi.p|Nanoce1779_2|587770|organism=Nannochloropsis oceanica|type=CDS|length=3168bp|location=Sequence derived from alignment at scaffold_9:555504..556937+ (Nannochloropsis oceanica)
ATGTTCCGCAACCAGTACGATACCGATGTTACTGTGTGGAGTCCTCAGGG
CCGGCTGCATCAAGTGGAGTACGCGTTGGAGGCGGTCAAGCAGGGTGCCT
GTGCCCTCGGCCTGCGCTCCAAGGACTTCGTCGTTCTAGCGGCCCTCAAG
CGTTCGGCCAATGAACTGTCGTCATACCAAAAGAAGATTTTCAAGGTGGA
CGATCATATCGGGATTGCCATTTCGGGCTTGACTGCCGATGCCCGCTCTT
TGGCCAAGTACATGCGGACCGAGGCCTTGAACCATAAGTACGTCTATGGC
AGCGCTTTACAGGCCAGCCGGTTGGTGTTGAATGTTGCAGACAAGCATCA
GCGATGCACTCAGTCTTATGTTCGACGGCCGTATGGTGTGGGGCTATTGA
TTGCTTCCTACGACCAGACTGGCCCCCACCTCTTCCAAACCGACCCCTCG
GGTGCCTACTACGAATATATTGCCCAAGCCATCGGCTCGCGCGCGCAATC
CGGCAAGACATATCTAGAGAAGTATTATGCGGAGTTTGAGGAGCTGGGTG
TGGATGATTTGATCAAGCATGCGTTGAAGGCGCTTTCGGGGACGACGGGA
GACAAGGAGCTGGATAAGGACAATGCTTCGGTAGCTGTGGTGGGGAAAGA
TCATCCGTTACAGATCATTGAGGGAGAGGAGCTGCAAAAGTACTTGGATG
CGGTCGAGGTGGAGGGCAATGCCGGCGGGACGGCGGCGGGTGAGGAGGCG
ATGGAGCTGGCGTCGGAGGGAGAGAGTATGAGCACGTCGTAAATGTTCCG
CAACCAGTACGATACCGATGTTACTGTGTGGAGTCCTCAGGGCCGGCTGC
ATCAAGTGGAGTACGCGTTGGAGGCGGTCAAGCAGGGTGCCTGTGCCCTC
GGCCTGCGCTCCAAGGACTTCGTCGTTCTAGCGGCCCTCAAGCGTTCGGC
CAATGAACTGTCGTCATACCAAAAGAAGATTTTCAAGGTGGACGATCATA
TCGGGATTGCCATTTCGGGCTTGACTGCCGATGCCCGCTCTTTGGCCAAG
TACATGCGGACCGAGGCCTTGAACCATAAGTACGTCTATGGCAGCGCTTT
ACAGGCCAGCCGGTTGGTGTTGAATGTTGCAGACAAGCATCAGCGATGCA
CTCAGTCTTATGTTCGACGGCCGTATGGTGTGGGGCTATTGATTGCTTCC
TACGACCAGACTGGCCCCCACCTCTTCCAAACCGACCCCTCGGGTGCCTA
CTACGAATATATTGCCCAAGCCATCGGCTCGCGCGCGCAATCCGGCAAGA
CATATCTAGAGAAGTATTATGCGGAGTTTGAGGAGCTGGGTGTGGATGAT
TTGATCAAGCATGCGTTGAAGGCGCTTTCGGGGACGACGGGAGACAAGGA
GCTGGATAAGGACAATGCTTCGGTAGCTGTGGTGGGGAAAGATCATCCGT
TACAGATCATTGAGGGAGAGGAGCTGCAAAAGTACTTGGATGCGGTCGAG
GTGGAGGGCAATGCCGGCGGGACGGCGGCGGGTGAGGAGGCGATGGAGCT
GGCGTCGGAGGGAGAGAGTATGAGCACGTCGTAAATGTTCCGCAACCAGT
ACGATACCGATGTTACTGTGTGGAGTCCTCAGGGCCGGCTGCATCAAGTG
GAGTACGCGTTGGAGGCGGTCAAGCAGGGTGCCTGTGCCCTCGGCCTGCG
CTCCAAGGACTTCGTCGTTCTAGCGGCCCTCAAGCGTTCGGCCAATGAAC
TGTCGTCATACCAAAAGAAGATTTTCAAGGTGGACGATCATATCGGGATT
GCCATTTCGGGCTTGACTGCCGATGCCCGCTCTTTGGCCAAGTACATGCG
GACCGAGGCCTTGAACCATAAGTACGTCTATGGCAGCGCTTTACAGGCCA
GCCGGTTGGTGTTGAATGTTGCAGACAAGCATCAGCGATGCACTCAGTCT
TATGTTCGACGGCCGTATGGTGTGGGGCTATTGATTGCTTCCTACGACCA
GACTGGCCCCCACCTCTTCCAAACCGACCCCTCGGGTGCCTACTACGAAT
ATATTGCCCAAGCCATCGGCTCGCGCGCGCAATCCGGCAAGACATATCTA
GAGAAGTATTATGCGGAGTTTGAGGAGCTGGGTGTGGATGATTTGATCAA
GCATGCGTTGAAGGCGCTTTCGGGGACGACGGGAGACAAGGAGCTGGATA
AGGACAATGCTTCGGTAGCTGTGGTGGGGAAAGATCATCCGTTACAGATC
ATTGAGGGAGAGGAGCTGCAAAAGTACTTGGATGCGGTCGAGGTGGAGGG
CAATGCCGGCGGGACGGCGGCGGGTGAGGAGGCGATGGAGCTGGCGTCGG
AGGGAGAGAGTATGAGCACGTCGTAAATGTTCCGCAACCAGTACGATACC
GATGTTACTGTGTGGAGTCCTCAGGGCCGGCTGCATCAAGTGGAGTACGC
GTTGGAGGCGGTCAAGCAGGGTGCCTGTGCCCTCGGCCTGCGCTCCAAGG
ACTTCGTCGTTCTAGCGGCCCTCAAGCGTTCGGCCAATGAACTGTCGTCA
TACCAAAAGAAGATTTTCAAGGTGGACGATCATATCGGGATTGCCATTTC
GGGCTTGACTGCCGATGCCCGCTCTTTGGCCAAGTACATGCGGACCGAGG
CCTTGAACCATAAGTACGTCTATGGCAGCGCTTTACAGGCCAGCCGGTTG
GTGTTGAATGTTGCAGACAAGCATCAGCGATGCACTCAGTCTTATGTTCG
ACGGCCGTATGGTGTGGGGCTATTGATTGCTTCCTACGACCAGACTGGCC
CCCACCTCTTCCAAACCGACCCCTCGGGTGCCTACTACGAATATATTGCC
CAAGCCATCGGCTCGCGCGCGCAATCCGGCAAGACATATCTAGAGAAGTA
TTATGCGGAGTTTGAGGAGCTGGGTGTGGATGATTTGATCAAGCATGCGT
TGAAGGCGCTTTCGGGGACGACGGGAGACAAGGAGCTGGATAAGGACAAT
GCTTCGGTAGCTGTGGTGGGGAAAGATCATCCGTTACAGATCATTGAGGG
AGAGGAGCTGCAAAAGTACTTGGATGCGGTCGAGGTGGAGGGCAATGCCG
GCGGGACGGCGGCGGGTGAGGAGGCGATGGAGCTGGCGTCGGAGGGAGAG
AGTATGAGCACGTCGTAA

Synonyms

Publications