jgi.p|Nanoce1779_2|442251, mRNA_4754 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|442251
Unique NamemRNA_4754
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1079
Alignment locationscaffold_9:553677..554918 +

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Properties
Property NameValue
TranscriptId442337
TrackFilteredModels2
ProteinId442251
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:553677..554918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|442251gene_4754Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|442251mRNA_4754-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4754CDS_4754Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4754 ID=mRNA_4754|Name=jgi.p|Nanoce1779_2|442251|organism=Nannochloropsis oceanica|type=mRNA|length=1079bp
GAGGAGGAGGAGGTGGTGGTCATCAAGAAGAAGAAGAGCAAAGACAAGGG
CAAGAGGGGGGGCGCGAAGCAAGCAAGGGAGGAGACAGAGAAAGAGGACG
TCCTTTTGTTGTTGAGCAGTGATGATGACAAGAATGATGATGATTATGAT
GATGAAGAGGAGGAGGAGGAGGAGGACGACGACGAACAACCGAACATGAG
TAGTAGCACCAAGATCGTCTCAGTGAGTAAGATAGAGGAGGACCAGGCGG
GGGTGGAGGAAAGGAAGGAAAGGAAAGAATGCCTGGGACAGCAGCAATTA
CTGGAAGCGCAGTCCTACGACGATGACGTGAACTTGATGATGGGCTGCAG
TGGTGATGATGATGGTACGAATGCTGTGTATTACCATGAAGAGGAGGGGA
AGGTGGAAGAGGAGGAGGAGGAGGAGGAGGAGGGAGGGATGGGGGAAATT
CCTGCGGTCTCTGCTGGGGCATGCATGGCGGGCGACACCGAGGAGGAGGA
GGAGGAGGAGGGCACGGAGGAGGAGACGGAGGAAGAAAAAGAGCGCAGGA
GAAGAAGAAAGGGAGACAAGGACATCAGCAGCAAGAAGCGGGCGGCGACG
CCTCTGAGTCCGGTGAAGGGCAAGGGGAGCAAAAAAGCTGCATTCGAGGG
GTCGCAGGAGGAGGAAGGAACAAGGTGCAGAGGAGGAGTAGGAGGAACAG
CGAATAGCAGCTGGGCATGTCTCTCATGCACATTTATGAACGGATCTCGG
AGGAAAAAGTGTGAGGTGTGCCATGGGGCGAAGCCGGTGTCGAGCAGCAG
CAGCAGCAGCCGTCGAAGCCGTGGGGGGGGAGGATCACAGTCGTCGTCGC
AAGGGGGTGTGGGGCAGGGATGGGAGTGAGTGATGGATAACGGAAACTGT
AGAGGAGAGTAGAGTGGAAAGGAGATGAGGTTAATGTAGCGAAACTGTAT
ATATGTGTGTATGGGAGAGTGAGTGTACGTGCATGGGAGAGACGATAGTG
AGAGGAGACTCCATTAACAAGCGTGAGAACAAGAGACGACCAAAATCAAA
ATTTGCAAACACTCAACTACTTAACGACC
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protein sequence of jgi.p|Nanoce1779_2|442251

>mRNA_4754-protein ID=mRNA_4754-protein|Name=jgi.p|Nanoce1779_2|442251|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MSSSTKIVSVSKIEEDQAGVEERKERKECLGQQQLLEAQSYDDDVNLMMG
CSGDDDGTNAVYYHEEEGKVEEEEEEEEEGGMGEIPAVSAGACMAGDTEE
EEEEEGTEEETEEEKERRRRRKGDKDISSKKRAATPLSPVKGKGSKKAAF
EGSQEEEGTRCRGGVGGTANSSWACLSCTFMNGSRRKKCEVCHGAKPVSS
SSSSSRRSRGGGGSQSSSQGGVGQGWE*
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mRNA from alignment at scaffold_9:553677..554918+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4754 ID=mRNA_4754|Name=jgi.p|Nanoce1779_2|442251|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp|location=Sequence derived from alignment at scaffold_9:553677..554918+ (Nannochloropsis oceanica)
GAGGAGGAGGAGGTGGTGGTCATCAAGAAGAAGAAGAGCAAAGACAAGGG
CAAGAGGGGGGGCGCGAAGCAAGCAAGGGAGGAGACAGAGAAAGAGGACG
TCCTTTGTAAGTATCTCGACGGGGTTTGGGGGGGAAAGGTGAGGGGACCA
GAGAGTTGTGTGTGGGAGTGTGTCATGCGACCCCTTGTGCCGTCTCTCTC
TTAAGTTCTTCCTGTGATCTATGACGCGGCTCACCCAATCCTTTTCTTGA
ACCCGACACACAAACACAGTGTTGTTGAGCAGTGATGATGACAAGAATGA
TGATGATTATGATGATGAAGAGGAGGAGGAGGAGGAGGACGACGACGAAC
AACCGAACATGAGTAGTAGCACCAAGATCGTCTCAGTGAGTAAGATAGAG
GAGGACCAGGCGGGGGTGGAGGAAAGGAAGGAAAGGAAAGAATGCCTGGG
ACAGCAGCAATTACTGGAAGCGCAGTCCTACGACGATGACGTGAACTTGA
TGATGGGCTGCAGTGGTGATGATGATGGTACGAATGCTGTGTATTACCAT
GAAGAGGAGGGGAAGGTGGAAGAGGAGGAGGAGGAGGAGGAGGAGGGAGG
GATGGGGGAAATTCCTGCGGTCTCTGCTGGGGCATGCATGGCGGGCGACA
CCGAGGAGGAGGAGGAGGAGGAGGGCACGGAGGAGGAGACGGAGGAAGAA
AAAGAGCGCAGGAGAAGAAGAAAGGGAGACAAGGACATCAGCAGCAAGAA
GCGGGCGGCGACGCCTCTGAGTCCGGTGAAGGGCAAGGGGAGCAAAAAAG
CTGCATTCGAGGGGTCGCAGGAGGAGGAAGGAACAAGGTGCAGAGGAGGA
GTAGGAGGAACAGCGAATAGCAGCTGGGCATGTCTCTCATGCACATTTAT
GAACGGATCTCGGAGGAAAAAGTGTGAGGTGTGCCATGGGGCGAAGCCGG
TGTCGAGCAGCAGCAGCAGCAGCCGTCGAAGCCGTGGGGGGGGAGGATCA
CAGTCGTCGTCGCAAGGGGGTGTGGGGCAGGGATGGGAGTGAGTGATGGA
TAACGGAAACTGTAGAGGAGAGTAGAGTGGAAAGGAGATGAGGTTAATGT
AGCGAAACTGTATATATGTGTGTATGGGAGAGTGAGTGTACGTGCATGGG
AGAGACGATAGTGAGAGGAGACTCCATTAACAAGCGTGAGAACAAGAGAC
GACCAAAATCAAAATTTGCAAACACTCAACTACTTAACGACC
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Coding sequence (CDS) from alignment at scaffold_9:553677..554918+

>mRNA_4754 ID=mRNA_4754|Name=jgi.p|Nanoce1779_2|442251|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_9:553677..554918+ (Nannochloropsis oceanica)
ATGAGTAGTAGCACCAAGATCGTCTCAGTGAGTAAGATAGAGGAGGACCA
GGCGGGGGTGGAGGAAAGGAAGGAAAGGAAAGAATGCCTGGGACAGCAGC
AATTACTGGAAGCGCAGTCCTACGACGATGACGTGAACTTGATGATGGGC
TGCAGTGGTGATGATGATGGTACGAATGCTGTGTATTACCATGAAGAGGA
GGGGAAGGTGGAAGAGGAGGAGGAGGAGGAGGAGGAGGGAGGGATGGGGG
AAATTCCTGCGGTCTCTGCTGGGGCATGCATGGCGGGCGACACCGAGGAG
GAGGAGGAGGAGGAGGGCACGGAGGAGGAGACGGAGGAAGAAAAAGAGCG
CAGGAGAAGAAGAAAGGGAGACAAGGACATCAGCAGCAAGAAGCGGGCGG
CGACGCCTCTGAGTCCGGTGAAGGGCAAGGGGAGCAAAAAAGCTGCATTC
GAGGGGTCGCAGGAGGAGGAAGGAACAAGGTGCAGAGGAGGAGTAGGAGG
AACAGCGAATAGCAGCTGGGCATGTCTCTCATGCACATTTATGAACGGAT
CTCGGAGGAAAAAGTGTGAGGTGTGCCATGGGGCGAAGCCGGTGTCGAGC
AGCAGCAGCAGCAGCCGTCGAAGCCGTGGGGGGGGAGGATCACAGTCGTC
GTCGCAAGGGGGTGTGGGGCAGGGATGGGAGTGA
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Synonyms
Publications