jgi.p|Nanoce1779_2|541189, mRNA_4752 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|541189
Unique Name	mRNA_4752
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1780
Alignment location	scaffold_9:547160..549038 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	541275
Track	FilteredModels2
ProteinId	541189

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:547160..549038 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|541189	gene_4752	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|541189	mRNA_4752-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4752	CDS_4752	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:547160..549038-
coding sequence from alignment at scaffold_9:547160..549038-

mRNA sequence

>mRNA_4752 ID=mRNA_4752|Name=jgi.p|Nanoce1779_2|541189|organism=Nannochloropsis oceanica|type=mRNA|length=1780bp
TCCTCCTCCTCCTCCTCCTCCTCCTCTTCTGTCTCCCATTTCCCCTCCTC
TTTGAAACCAACGCAACAAGGACGACGACAACAGCGGCGACAACAACATG
ATGTCAATTATACTCTACTTTCACCCGGCAACATCAAGGAGTTTCTCATG
CTCTGTCGACCATGCGTAGGCTGGCCGCCCCTCAAGCACAGCTCATTCAT
TCCGGCTTTGATAATTGCCGTCGACGGTGGCGGCAATGAGGACTCCACTC
CCACTACCAACAGCATTTTATTGTCCTTGAATTTGTATGTCCCACCCATT
CGCCCCACCAACAAATCAATTTCAACATCAGCACTTGAGGAAACCATGCT
TCACTGCAATAGCCTGGCCTCGCTACCTCTACGCTCCAGGGCACTCGACT
GCATCCTCATTCAAATTGCGGACATTACAGACACTCAACGCCTGCACACC
TCATTGTCGCAGCTCGGTACTTTTCTCAGCAGCGATGCCATGACGCACGT
ATTGATCTGCATTGTAACACCTGGACGGCTGACAGCCGCCGTGTTGGCTC
TCTTAGAAGATGCACTAAATGAATCTTCCTCCTCTTCCTCCTCCTCCGCT
TCCTCCTCCTCCTCCTCTTCCTCCGTTCATCCACCCCTACAAGTAGTATC
CCTCCGACAGCTTACCCCAGGTAATTTATGGCAGTGCGGACCATGCGCTC
TAGAGCTTGCGGGGCCATTACTGAACGGCGGGAGCGGAAGCAGGATTAAC
GGCAGTAGCTCTTTTGGTCTAATTCAACTACAACGCTACCCTGCATGTAA
CCCTCCACATCCTGCTATTGCTGCTCCGCCTGCTGCCGCCACCACCACCA
CAACTCTAGTATCATCATCAGCGGCACGACTTCGCCTGCTCCGCCTCCTC
GAAACCTCTCTCTACTTTGACCAGTCCCAGCCCGGCGTTTTCCTTCCCTC
CTCCGACTCCTCCTTCCCTCTCACCCCCGCCGAGCTCGCCTACCTCCATC
CACCCCCCCCCTCAGGCTGCTCTTTGCACCTTCCCAACTACTACGACAAC
TGGCAAGCACTCTACCCCTCCCTCCTCCGCTTCCTCCTCGATGACTTCGA
AGGCATAAAAAAGGAGGCTCTCTCTGTTTCCTCCTGGACTCCATGGCCTG
AATACCATTTCAGAGACGGGGGCAGCGAGAACGACTGGAGGGTCGTTCCC
TTCCTTCACACCTTCCCCGCCACGGACCCAACGGCCAGCAAGTGGATAGA
AAGCACCTGTACACGCTGCCCGATCATCCGTAAGGCCCTGGAAAAACTGA
GGCCGTTTGTAAGGACTGCTCTACTTTCTCGCCTGGGGCCAGATACGAGA
TTGTCTGCTCACACAGGGTGGGAGGATTTGGCGAATCACGTTTTAAGGGT
GCACTTGACATTGGTGGGAGGGATTGGGGTGTGTGGCACGTGGGTGGAGG
GGGAGGTGAGATGCCATAGGGAGAAGGAATTCGTCGTGTTTGATGATAGC
AAGGTGCACAAGGCATTTAATCTGCATAAGACGGATGCGAGGGTGGTGTT
AATTTTGGACCTTGTCAGGCCGGGGTATGTGGAGGAGGGAGTGGCGGTGG
GCGGCCACACTGAGGAATTGGATAAGTTCATCAGCGCCTTTAATTGAAAA
GGCAAAGATTGAGAATGATACCAAAAAGAAGAGTCGGGATTTTTTAAATT
GTTTAAACGGTGTCAAGGAAAAATGGAGTAAATACACAAAAATAACATAA
ATAAGAGATAGAACGAAATCACAGCGAGAG

protein sequence of jgi.p|Nanoce1779_2|541189

>mRNA_4752-protein ID=mRNA_4752-protein|Name=jgi.p|Nanoce1779_2|541189|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MLCRPCVGWPPLKHSSFIPALIIAVDGGGNEDSTPTTNSILLSLNLYVPP
IRPTNKSISTSALEETMLHCNSLASLPLRSRALDCILIQIADITDTQRLH
TSLSQLGTFLSSDAMTHVLICIVTPGRLTAAVLALLEDALNESSSSSSSS
ASSSSSSSSVHPPLQVVSLRQLTPGNLWQCGPCALELAGPLLNGGSGSRI
NGSSSFGLIQLQRYPACNPPHPAIAAPPAAATTTTTLVSSSAARLRLLRL
LETSLYFDQSQPGVFLPSSDSSFPLTPAELAYLHPPPPSGCSLHLPNYYD
NWQALYPSLLRFLLDDFEGIKKEALSVSSWTPWPEYHFRDGGSENDWRVV
PFLHTFPATDPTASKWIESTCTRCPIIRKALEKLRPFVRTALLSRLGPDT
RLSAHTGWEDLANHVLRVHLTLVGGIGVCGTWVEGEVRCHREKEFVVFDD
SKVHKAFNLHKTDARVVLILDLVRPGYVEEGVAVGGHTEELDKFISAFN*

mRNA from alignment at scaffold_9:547160..549038-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4752 ID=mRNA_4752|Name=jgi.p|Nanoce1779_2|541189|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp|location=Sequence derived from alignment at scaffold_9:547160..549038- (Nannochloropsis oceanica)
TCCTCCTCCTCCTCCTCCTCCTCCTCTTCTGTCTCCCATTTCCCCTCCTC
TTTGAAACCAACGCAACAAGGACGACGACAACAGCGGCGACAACAACATG
ATGTCAATTATACTCTACTTTCACCCGGCAACATCAAGGAGTTTCTCATG
CTCTGTCGACCATGCGTAGGCTGGCCGCCCCTCAAGCACAGCTCATTCAT
TCCGGCTTTGATAATTGCCGTCGACGGTGGCGGCAATGAGGACTCCACTC
CCACTACCAACAGCATTTTATTGTCCTTGAATTTGTATGTCCCACCCATT
CGCCCCACCAACAAATCAATTTCAACATCAGCACTTGAGGAAACCATGCT
TCACTGCAATAGCCTGGCCTCGCTACCTCTACGCTCCAGGGCACTCGACT
GCATCCTCATTCAAATTGCGGACATTACAGACACTCAACGCCTGCACACC
TCATTGTCGCAGCTCGGTACTTTTCTCAGCAGCGATGCCATGACGCACGT
ATTGATCTGCATTGTAACACCTGGACGGCTGACAGCCGCCGTGTTGGCTC
TCTTAGAAGATGCACTAAATGAATCTTCCTCCTCTTCCTCCTCCTCCGCT
TCCTCCTCCTCCTCCTCTTCCTCCGTTCATCCACCCCTACAAGTAGTATC
CCTCCGACAGCTTACCCCAGGTAATTTATGGCAGTGCGGACCATGCGCTC
TAGAGCTTGCGGGGCCATTACTGAACGGCGGGAGCGGAAGCAGGATTAAC
GGCAGTAGCTCTTTTGGTCTAATTCAACTACAACGCTACCCTGCATGTAA
CCCTCCACATCCTGCTATTGCTGCTCCGCCTGCTGCCGCCACCACCACCA
CAACTCTAGTATCATCATCAGCGGCACGACTTCGCCTGCTCCGCCTCCTC
GAAACCTCTCTCTACTTTGACCAGTCCCAGCCCGGCGTTTTCCTTCCCTC
CTCCGACTCCTCCTTCCCTCTCACCCCCGCCGAGCTCGCCTACCTCCATC
CACCCCCCCCCTCAGGCTGCTCTTTGCACCTTCCCAACTACTACGACAAC
TGGCAAGCACTCTACCCCTCCCTCCTCCGCTTCCTCCTCGATGACTTCGA
AGGCATAAAAAAGGAGGCTCTCTCTGTTTCCTCCTGGACTCCATGGCCTG
AATACCATTTCAGAGACGGGGGCAGCGAGAACGACTGGAGGGTCGTTCCC
TTCCTTCACACCTTCCCCGCCACGGACCCAACGGCCAGCAAGTGGATAGA
AAGCACCTGTACACGCTGCCCGATCATCCGTAAGGCCCTGGAAAAACTGA
GGCCGTTTGTAAGGACTGCTCTACTTTCTCGCCTGGGGCCAGATACGAGA
TTGTCTGCTCACACAGGGTGGGAGGATTTGGCGAATCACGTTTTAAGGGT
GCACTTGACATTGGTGGTGCCGAAGGAGAGAGAGGGAGGAAGGGGGCAGA
ACGGGGAACATCGGGTGGGGGATGGGGGGCGTTGGGAGGAGGGGGGAAGG
GAGGGACTTGTGGAGGGAGGGATTGGGGTGTGTGGCACGTGGGTGGAGGG
GGAGGTGAGATGCCATAGGGAGAAGGAATTCGTCGTGTTTGATGATAGCA
AGGTGCACAAGGCATTTAATCTGCATAAGACGGATGCGAGGGTGGTGTTA
ATTTTGGACCTTGTCAGGCCGGGGTATGTGGAGGAGGGAGTGGCGGTGGG
CGGCCACACTGAGGAATTGGATAAGTTCATCAGCGCCTTTAATTGAAAAG
GCAAAGATTGAGAATGATACCAAAAAGAAGAGTCGGGATTTTTTAAATTG
TTTAAACGGTGTCAAGGAAAAATGGAGTAAATACACAAAAATAACATAAA
TAAGAGATAGAACGAAATCACAGCGAGAG

Coding sequence (CDS) from alignment at scaffold_9:547160..549038-

>mRNA_4752 ID=mRNA_4752|Name=jgi.p|Nanoce1779_2|541189|organism=Nannochloropsis oceanica|type=CDS|length=3000bp|location=Sequence derived from alignment at scaffold_9:547160..549038- (Nannochloropsis oceanica)
GGAGGGATTGGGGTGTGTGGCACGTGGGTGGAGGGGGAGGTGAGATGCCA
TAGGGAGAAGGAATTCGTCGTGTTTGATGATAGCAAGGTGCACAAGGCAT
TTAATCTGCATAAGACGGATGCGAGGGTGGTGTTAATTTTGGACCTTGTC
AGGCCGGGGTATGTGGAGGAGGGAGTGGCGGTGGGCGGCCACACTGAGGA
ATTGGATAAGTTCATCAGCGCCTTTAATTGAATGCTCTGTCGACCATGCG
TAGGCTGGCCGCCCCTCAAGCACAGCTCATTCATTCCGGCTTTGATAATT
GCCGTCGACGGTGGCGGCAATGAGGACTCCACTCCCACTACCAACAGCAT
TTTATTGTCCTTGAATTTGTATGTCCCACCCATTCGCCCCACCAACAAAT
CAATTTCAACATCAGCACTTGAGGAAACCATGCTTCACTGCAATAGCCTG
GCCTCGCTACCTCTACGCTCCAGGGCACTCGACTGCATCCTCATTCAAAT
TGCGGACATTACAGACACTCAACGCCTGCACACCTCATTGTCGCAGCTCG
GTACTTTTCTCAGCAGCGATGCCATGACGCACGTATTGATCTGCATTGTA
ACACCTGGACGGCTGACAGCCGCCGTGTTGGCTCTCTTAGAAGATGCACT
AAATGAATCTTCCTCCTCTTCCTCCTCCTCCGCTTCCTCCTCCTCCTCCT
CTTCCTCCGTTCATCCACCCCTACAAGTAGTATCCCTCCGACAGCTTACC
CCAGGTAATTTATGGCAGTGCGGACCATGCGCTCTAGAGCTTGCGGGGCC
ATTACTGAACGGCGGGAGCGGAAGCAGGATTAACGGCAGTAGCTCTTTTG
GTCTAATTCAACTACAACGCTACCCTGCATGTAACCCTCCACATCCTGCT
ATTGCTGCTCCGCCTGCTGCCGCCACCACCACCACAACTCTAGTATCATC
ATCAGCGGCACGACTTCGCCTGCTCCGCCTCCTCGAAACCTCTCTCTACT
TTGACCAGTCCCAGCCCGGCGTTTTCCTTCCCTCCTCCGACTCCTCCTTC
CCTCTCACCCCCGCCGAGCTCGCCTACCTCCATCCACCCCCCCCCTCAGG
CTGCTCTTTGCACCTTCCCAACTACTACGACAACTGGCAAGCACTCTACC
CCTCCCTCCTCCGCTTCCTCCTCGATGACTTCGAAGGCATAAAAAAGGAG
GCTCTCTCTGTTTCCTCCTGGACTCCATGGCCTGAATACCATTTCAGAGA
CGGGGGCAGCGAGAACGACTGGAGGGTCGTTCCCTTCCTTCACACCTTCC
CCGCCACGGACCCAACGGCCAGCAAGTGGATAGAAAGCACCTGTACACGC
TGCCCGATCATCCGTAAGGCCCTGGAAAAACTGAGGCCGTTTGTAAGGAC
TGCTCTACTTTCTCGCCTGGGGCCAGATACGAGATTGTCTGCTCACACAG
GGTGGGAGGATTTGGCGAATCACGTTTTAAGGGTGCACTTGACATTGGTG
GGAGGGATTGGGGTGTGTGGCACGTGGGTGGAGGGGGAGGTGAGATGCCA
TAGGGAGAAGGAATTCGTCGTGTTTGATGATAGCAAGGTGCACAAGGCAT
TTAATCTGCATAAGACGGATGCGAGGGTGGTGTTAATTTTGGACCTTGTC
AGGCCGGGGTATGTGGAGGAGGGAGTGGCGGTGGGCGGCCACACTGAGGA
ATTGGATAAGTTCATCAGCGCCTTTAATTGAATGCTCTGTCGACCATGCG
TAGGCTGGCCGCCCCTCAAGCACAGCTCATTCATTCCGGCTTTGATAATT
GCCGTCGACGGTGGCGGCAATGAGGACTCCACTCCCACTACCAACAGCAT
TTTATTGTCCTTGAATTTGTATGTCCCACCCATTCGCCCCACCAACAAAT
CAATTTCAACATCAGCACTTGAGGAAACCATGCTTCACTGCAATAGCCTG
GCCTCGCTACCTCTACGCTCCAGGGCACTCGACTGCATCCTCATTCAAAT
TGCGGACATTACAGACACTCAACGCCTGCACACCTCATTGTCGCAGCTCG
GTACTTTTCTCAGCAGCGATGCCATGACGCACGTATTGATCTGCATTGTA
ACACCTGGACGGCTGACAGCCGCCGTGTTGGCTCTCTTAGAAGATGCACT
AAATGAATCTTCCTCCTCTTCCTCCTCCTCCGCTTCCTCCTCCTCCTCCT
CTTCCTCCGTTCATCCACCCCTACAAGTAGTATCCCTCCGACAGCTTACC
CCAGGTAATTTATGGCAGTGCGGACCATGCGCTCTAGAGCTTGCGGGGCC
ATTACTGAACGGCGGGAGCGGAAGCAGGATTAACGGCAGTAGCTCTTTTG
GTCTAATTCAACTACAACGCTACCCTGCATGTAACCCTCCACATCCTGCT
ATTGCTGCTCCGCCTGCTGCCGCCACCACCACCACAACTCTAGTATCATC
ATCAGCGGCACGACTTCGCCTGCTCCGCCTCCTCGAAACCTCTCTCTACT
TTGACCAGTCCCAGCCCGGCGTTTTCCTTCCCTCCTCCGACTCCTCCTTC
CCTCTCACCCCCGCCGAGCTCGCCTACCTCCATCCACCCCCCCCCTCAGG
CTGCTCTTTGCACCTTCCCAACTACTACGACAACTGGCAAGCACTCTACC
CCTCCCTCCTCCGCTTCCTCCTCGATGACTTCGAAGGCATAAAAAAGGAG
GCTCTCTCTGTTTCCTCCTGGACTCCATGGCCTGAATACCATTTCAGAGA
CGGGGGCAGCGAGAACGACTGGAGGGTCGTTCCCTTCCTTCACACCTTCC
CCGCCACGGACCCAACGGCCAGCAAGTGGATAGAAAGCACCTGTACACGC
TGCCCGATCATCCGTAAGGCCCTGGAAAAACTGAGGCCGTTTGTAAGGAC
TGCTCTACTTTCTCGCCTGGGGCCAGATACGAGATTGTCTGCTCACACAG
GGTGGGAGGATTTGGCGAATCACGTTTTAAGGGTGCACTTGACATTGGTG

Synonyms

Publications