jgi.p|Nanoce1779_2|442245, mRNA_4751 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|442245
Unique Name	mRNA_4751
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3249
Alignment location	scaffold_9:543225..546714 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	442331
Track	FilteredModels2
ProteinId	442245

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:543225..546714 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|442245	gene_4751	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|442245	mRNA_4751-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4751	CDS_4751	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:543225..546714-
coding sequence from alignment at scaffold_9:543225..546714-

mRNA sequence

>mRNA_4751 ID=mRNA_4751|Name=jgi.p|Nanoce1779_2|442245|organism=Nannochloropsis oceanica|type=mRNA|length=3249bp
CCTTTTCTTCTCCTTTCCCTCTCCTCCTACGCCCTCGAAGGCTATCTAAC
TATGAGCAAGACCAAGACTTGTTCCCCCCGACCCTCTCTCCGTAGCCCCC
GCAGCAAACGGACTCCTGTAGATTGCCCGCATTTTCTCATTGTTCCTCGC
TTTCCACCAATCCAAGCACTGCCAATGCAAGATCCTCACTTCTTTCTTCC
TCTCATCCCTTCCCGGCTTCAACGGATCCAGACTATTTTTGAGCGCCGCC
CAGGCCTTTCTGATCTCTGGTAGCTCTTCCCCCTTCTTTGCCGGAATTCT
TAAAATTTTAATAGCCTCGTCATATAAACCTTTCATTCCCAAGCTTTCCA
CCCGTTTTGCCTCCATCGTCGCACCAGGACCTTTGTGCGATGCCAGCAAC
GACAACAACACCATTCGTCGATGATCCATCGCGTTCCTCAAGCGATTCCA
CAACAAAAAGGTTGGGTTAACTTTAATACTGTCCATCCCGAGTCTCCGTG
CAAGCCGTAGTCCCAGGCGAGGTCCTACACGAGACAAAGCCACGTAAGTC
TGTCCGCCATCGAAGCACTCTTGGACGTCCACCAGGGCTTCTTGCAATGT
CATACCTTGAGATTTGTGAATGGATATGGCAAACCCAATCATTAGGGGAA
GCTGGATGCGACACGTACTCCCTACACCAACAATGTTCTCTGACAGAAGC
TCGGGATAAATCGCCTTCTTGCGTCCGTTTGTAAACTCCACGACCGGAAT
GCGCCGCTTATTGGCCTCGAACCACTCATTTACAACCTTCTCCTTGTACT
CAATCAGATCATGCTCCTTGTCCCGTCGCCGTTTGGTTGGAGACGGGCTC
GCCTTTCTACTTGTCAATCCCTCCATCTGCTCTTCTGTCCCAGCACCACC
ATTTCCTCCTTTTTTCCCCTTTCCCGTCACCTCCTCCTCCATGTCCAGAT
CAAGGCAAGGGTCGTCCAATGGCGCCCAGGACACCACCACGCCCACACTC
CCATTCACTAACTTCTTGGGGCCAACCAAATCGAGGTTCTTCAACAATAG
CACTTTTGCTCCCAGTTTGAGTTCGACCCTCTCTGCGGCCAAACAGGTTT
TGTAGTAGGTGTGGTTGGCGAGTAGGAGTTGTAAGTCACGGCGCACCCTC
CCGTCAAAGGCGTTGGGGCTCTGTCCCCTCCTGAGGATCGCGCCTGTGTT
CTCATGCCAAACGAAGTCATGCGTGTCGTATTCCTCCAAGGGCGAGTCTA
AGGCATCCAGCATCAACTTATTCCTGCGCTCGACTAAGACATTCTTGGGG
TACAGATGCAAAGCGCTCGATTTGCTCAGTGTAGCTCTCGTCGCCGCTTC
TTCGCATCTTCCTGTTCCGGCGCCGGTAACAGAATCTGCAGCACCCTCAT
CACCACCCGTTTCAATCGCTACGAAGGTGGAAATAGGCGACTGAGACTGC
TCTCTTGTGGTTTGGTTGGGTGTATATACCTCCTCTTCCATCCCACTTTC
CAGCATCTGCAAGTACTGCTGCTCTATCTCATACTCATACTCCTCCTCTC
CACGAATTTCCTCCCGCTGCTGCTGCTCCACCTGTATCTGCAACTGTTCC
TGCTCCCTTCGCTCCAACTCTTTCTGTTGAGTAAGATCCTTTTGGAAGGG
TGCATAGTAAAACTCTTGGTTCAGCCAGTGCAAGTCCTCGTGGGTCGTCT
CCCCCTTTCTCATTCTATTCAATGTAGCAATAAAGTGAACATCGTCCTGT
CGAAACACTTTCGTAAGCTCAATGATCCTTAAATCTAGGTTCCACCATAC
CTCCGACTGCAAGGCTAGCCCCCTGTTCGAAAAGAGCACCTCTTGCCTTG
GCTGCGGATTAAGACCCTCCCTCATTCTACAATAACCCCCCCCCTCCTCC
TCCTGCTGCTGCTGCTGTGATCCAGCTCCCGTTGTAATAACAGGCATGTG
CCAGAACTCGTGGTGACGAGGAAAATACCAATCTTCAGGGCGCACAAAAT
CATTCGTGGTGTAAGTAGGGTCTTCTGGCACTGGCGGGAGCTGGGCGAAG
TCCCCAATAAAAATGACTTGCAATCCACCAAAGGGGCTAGCATTATGACG
GATCCGTTGAATCGTATAACTTAAAGCATCAAGCATCTCCCCACTCAACA
TAGAAATCTCGTCGATAATCAGGACTTCATAAGACTTGCTCCAGCGATGT
TCCACGTTTTTGTCATGCCCGAACATCCTCCCAAAATTGTCCCAGCACCG
AGGAACGCCCACCCCCGTAGCCGTGTGCAGAGTAGTGCCATTAAGCTGCG
TACTAGCAATGCCCGTACTTGCAGTCACACACACTTTCTTCCCATATTCT
GCGCCGTAATGCTCCTTAAACAGCTGAATAAAAAGGGTGGTCACATAGCT
CTTACCCACCCCACCGGAGCCCGTTAGAAAAACATTGTTCCGCCGAATCA
CCACCTCTTCCAGCGCCCTGCGTTGCAGCACATCAAGCTTCAAACCCGGG
CACAGTCGCGCAAGTTGTGCATCCAACCAACCCGTCTTGATGGGCTGCGC
GCGAACAGTAGGGGGAGGATATTCCGGAGGCGCGTCAAAAAGATTTTGAC
CTCCAAACTCTTCACCCTCTCTTGCCCCACCACCGCCGGAATAGGACGGC
GGACATTGCTGCTCTTGTTGGGAAGGAGACATGAAACTCGGATAAGCAGG
ACTAGCAGGCGGGGGGAAGCGCTGTGAATTCTGAGGCCCAATAAAGTCGG
TTAGATATGCCACCGCCTCGGGCCGCGTAAGAAAAAGACGAAGTGTAAAC
CTAGTCCCTGGAAGCCTTGCTTTCACGCTCGCTTGCACACCGGCCCAATT
GGTATAGATGCCGACCGCAGGATGAGGATGAGGGTCGCCGCCACCGCCGG
CTCCTACGTTCCCGCCTTCCTCAAATCGAACGGCATAAAAGGGGGTCGTC
ATGCGCCTATAAGGCATGGATTGTCCACGAGATCCTAGGTAAACCTTCTA
CAAGCAGACAAGCAGCATAAGCAGCCTCCCCGCGTCTCCCTTTCCGGCCA
TCACAACTGCATGCAACAACAGGCCTGGGTTCAGACTGCCAGTGCAGGGC
TTTCGCTCACAACTTTCTCGAGCTCTTTCTTGTCGCCCTGCTTTTCCTTT
GGAGCGCACAGCCACAGGATCGACCGTCTGCGTGTGCTTTCCAACCTCCC
CACAACTCTGCGCTGGCAACAGGACTTCACCATGATAGCAGCAAGCGGA

protein sequence of jgi.p|Nanoce1779_2|442245

>mRNA_4751-protein ID=mRNA_4751-protein|Name=jgi.p|Nanoce1779_2|442245|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MQSARFAQCSSRRRFFASSCSGAGNRICSTLITTRFNRYEGGNRRLRLLS
CGLVGCIYLLFHPTFQHLQVLLLYLILILLLSTNFLPLLLLHLYLQLFLL
PSLQLFLLSKILLEGCIVKLLVQPVQVLVGRLPLSHSIQCSNKVNIVLSK
HFRKLNDP*

mRNA from alignment at scaffold_9:543225..546714-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4751 ID=mRNA_4751|Name=jgi.p|Nanoce1779_2|442245|organism=Nannochloropsis oceanica|type=mRNA|length=3490bp|location=Sequence derived from alignment at scaffold_9:543225..546714- (Nannochloropsis oceanica)
CCTTTTCTTCTCCTTTCCCTCTCCTCCTACGCCCTCGAAGGCTATCTAAC
TATGAGCAAGACCAAGACTTGTTCCCCCCGACCCTCTCTCCGTAGCCCCC
GCAGCAAACGGACTCCTGTAGATTGCCCGCATTTTCTCATTGTTCCTCGC
TTTCCACCAATCCAAGCACTGCCAATGCAAGATCCTCACTTCTTTCTTCC
TCTCATCCCTTCCCGGCTTCAACGGATCCAGACTATTTTTGAGCGCCGCC
CAGGCCTTTCTGATCTCTGGTAGCTCTTCCCCCTTCTTTGCCGGAATTCT
TAAAATTTTAATAGCCTCGTCATATAAACCTTTCATTCCCAAGCTTTCCA
CCCGTTTTGCCTCCATCGTCGCACCAGGACCTTTGTGCGATGCCAGCAAC
GACAACAACACCATTCGTCGATGATCCATCGCGTTCCTCAAGCGATTCCA
CAACAAAAAGGTTGGGTTAACTTTAATACTGTCCATCCCGAGTCTCCGTG
CAAGCCGTAGTCCCAGGCGAGGTCCTACACGAGACAAAGCCACGTAAGTC
TGTCCGCCATCGAAGCACTCTTGGACGTCCACCAGGGCTTCTTGCAATGT
CATACCTTGAGATTTGTGAATGGATATGGCAAACCCAATCATTAGGGGAA
GCTGGATGCGACACGTACTCCCTACACCAACAATGTTCTCTGACAGAAGC
TCGGGATAAATCGCCTTCTTGCGTCCGTTTGTAAACTCCACGACCGGAAT
GCGCCGCTTATTGGCCTCGAACCACTCATTTACAACCTTCTCCTTGTACT
CAATCAGATCATGCTCCTTGTCCCGTCGCCGTTTGGTTGGAGACGGGCTC
GCCTTTCTACTTGTCAATCCCTCCATCTGCTCTTCTGTCCCAGCACCACC
ATTTCCTCCTTTTTTCCCCTTTCCCGTCACCTCCTCCTCCATGTCCAGAT
CAAGGCAAGGGTCGTCCAATGGCGCCCAGGACACCACCACGCCCACACTC
CCATTCACTAACTTCTTGGGGCCAACCAAATCGAGGTTCTTCAACAATAG
CACTTTTGCTCCCAGTTTGAGTTCGACCCTCTCTGCGGCCAAACAGGTTT
TGTAGTAGGTGTGGTTGGCGAGTAGGAGTTGTAAGTCACGGCGCACCCTC
CCGTCAAAGGCGTTGGGGCTCTGTCCCCTCCTGAGGATCGCGCCTGTGTT
CTCATGCCAAACGAAGTCATGCGTGTCGTATTCCTCCAAGGGCGAGTCTA
AGGCATCCAGCATCAACTTATTCCTGCGCTCGACTAAGACATTCTTGGGG
TACAGATGCAAAGCGCTCGATTTGCTCAGTGTAGCTCTCGTCGCCGCTTC
TTCGCATCTTCCTGTTCCGGCGCCGGTAACAGAATCTGCAGCACCCTCAT
CACCACCCGTTTCAATCGCTACGAAGGTGGAAATAGGCGACTGAGACTGC
TCTCTTGTGGTTTGGTTGGGTGTATATACCTCCTCTTCCATCCCACTTTC
CAGCATCTGCAAGTACTGCTGCTCTATCTCATACTCATACTCCTCCTCTC
CACGAATTTCCTCCCGCTGCTGCTGCTCCACCTGTATCTGCAACTGTTCC
TGCTCCCTTCGCTCCAACTCTTTCTGTTGAGTAAGATCCTTTTGGAAGGG
TGCATAGTAAAACTCTTGGTTCAGCCAGTGCAAGTCCTCGTGGGTCGTCT
CCCCCTTTCTCATTCTATTCAATGTAGCAATAAAGTGAACATCGTCCTGT
CGAAACACTTTCGTAAGCTCAATGATCCTTAAATCTAGGTTCCACCATAC
CTCCGACTGCAAGGCTAGCCCCCTGTTCGAAAAGAGCACCTCTTGCCTTG
GCTGCGGATTAAGACCCTCCCTCATTCTACAATAACCCCCCCCCTCCTCC
TCCTGCTGCTGCTGCTGTGATCCAGCTCCCGTTGTAATAACAGGCATGTG
CCAGAACTCGTGGTGACGAGGAAAATACCAATCTTCAGGGCGCACAAAAT
CATTCGTGGTGTAAGTAGGGTCTTCTGGCACTGGCGGGAGCTGGGCGAAG
TCCCCAATAAAAATGACTTGCAATCCACCAAAGGGGCTAGCATTATGACG
GATCCGTTGAATCGTATAACTTAAAGCATCAAGCATCTCCCCACTCAACA
TAGAAATCTCGTCGATAATCAGGACTTCATAAGACTTGCTCCAGCGATGT
TCCACGTTTTTGTCATGCCCGAACATCCTCCCAAAATTGTCCCAGCACCG
AGGAACGCCCACCCCCGTAGCCGTGTGCAGAGTAGTGCCATTAAGCTGCG
TACTAGCAATGCCCGTACTTGCAGTCACACACACTTTCTTCCCATATTCT
GCGCCGTAATGCTCCTTAAACAGCTGAATAAAAAGGGTGGTCACATAGCT
CTTACCCACCCCACCGGAGCCCGTTAGAAAAACATTGTTCCGCCGAATCA
CCACCTCTTCCAGCGCCCTGCGTTGCAGCACATCAAGCTTCAAACCCGGG
CACAGTCGCGCAAGTTGTGCATCCAACCAACCCGTCTTGATGGGCTGCGC
GCGAACAGTAGGGGGAGGATATTCCGGAGGCGCGTCAAAAAGATTTTGAC
CTCCAAACTCTTCACCCTCTCTTGCCCCACCACCGCCGGAATAGGACGGC
GGACATTGCTGCTCTTGTTGGGAAGGAGACATGAAACTCGGATAAGCAGG
ACTAGCAGGCGGGGGGAAGCGCTGTGAATTCTGAGGCCCAATAAAGTCGG
TTAGATATGCCACCGCCTCGGGCCGCGTAAGAAAAAGACGAAGTGTAAAC
CTAGTCCCTGGAAGCCTTGCTTTCACGCTCGCTTGCACACCGGCCCAATT
GGTATAGATGCCGACCGCAGGATGAGGATGAGGGTCGCCGCCACCGCCGG
CTCCTACGTTCCCGCCTTCCTCAAATCGAACGGCATAAAAGGGGGTCGTC
ATGCGCCTATAAGGCATGGATTGTCGTAAGTAGATGTGGTGGGCGGCGTG
GGTGATTTTTTATTTTGAAGTGAGATTGAGCTGGGCATGGCATTGATTGA
TAAACCTCCGCGATACCATTGTATCTGCTCATGTCCTCTTGCACTTTACG
CTTAGACAAATCACGCAACCACATCCATGAAATGCACAAACATGGGCATG
CTACGCTTGTTTCAACTGCTTGCTTTCGTTCTCCCACCACTTGCCTCACA
TTTGTCACGCCTGTAGCACGAGATCCTAGGTAAACCTTCTACAAGCAGAC
AAGCAGCATAAGCAGCCTCCCCGCGTCTCCCTTTCCGGCCATCACAACTG
CATGCAACAACAGGCCTGGGTTCAGACTGCCAGTGCAGGGCTTTCGCTCA
CAACTTTCTCGAGCTCTTTCTTGTCGCCCTGCTTTTCCTTTGGAGCGCAC
AGCCACAGGATCGACCGTCTGCGTGTGCTTTCCAACCTCCCCACAACTCT
GCGCTGGCAACAGGACTTCACCATGATAGCAGCAAGCGGA

Coding sequence (CDS) from alignment at scaffold_9:543225..546714-

>mRNA_4751 ID=mRNA_4751|Name=jgi.p|Nanoce1779_2|442245|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_9:543225..546714- (Nannochloropsis oceanica)
ATGCAAAGCGCTCGATTTGCTCAGTGTAGCTCTCGTCGCCGCTTCTTCGC
ATCTTCCTGTTCCGGCGCCGGTAACAGAATCTGCAGCACCCTCATCACCA
CCCGTTTCAATCGCTACGAAGGTGGAAATAGGCGACTGAGACTGCTCTCT
TGTGGTTTGGTTGGGTGTATATACCTCCTCTTCCATCCCACTTTCCAGCA
TCTGCAAGTACTGCTGCTCTATCTCATACTCATACTCCTCCTCTCCACGA
ATTTCCTCCCGCTGCTGCTGCTCCACCTGTATCTGCAACTGTTCCTGCTC
CCTTCGCTCCAACTCTTTCTGTTGAGTAAGATCCTTTTGGAAGGGTGCAT
AGTAAAACTCTTGGTTCAGCCAGTGCAAGTCCTCGTGGGTCGTCTCCCCC
TTTCTCATTCTATTCAATGTAGCAATAAAGTGAACATCGTCCTGTCGAAA
CACTTTCGTAAGCTCAATGATCCTTAA

Synonyms

Publications