jgi.p|Nanoce1779_2|587753, mRNA_4750 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587753
Unique NamemRNA_4750
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length743
Alignment locationscaffold_9:542758..543500 -

Link to JBrowse

Properties
Property NameValue
TranscriptId587839
TrackFilteredModels2
ProteinId587753
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:542758..543500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587753gene_4750Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587753mRNA_4750-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4750CDS_4750Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4750 ID=mRNA_4750|Name=jgi.p|Nanoce1779_2|587753|organism=Nannochloropsis oceanica|type=mRNA|length=743bp
AGCACGAGATCCTAGGTAAACCTTCTACAAGCAGACAAGCAGCATAAGCA
GCCTCCCCGCGTCTCCCTTTCCGGCCATCACAACTGCATGCAACAACAGG
CCTGGGTTCAGACTGCCAGTGCAGGGCTTTCGCTCACAACTTTCTCGAGC
TCTTTCTTGTCGCCCTGCTTTTCCTTTGGAGCGCACAGCCACAGGATCGA
CCGTCTGCGTGTGCTTTCCAACCTCCCCACAACTCTGCGCTGGCAACAGG
ACTTCACCATGATAGCAGCAAGCGGAAGCAATGACGACGATGGACAACTC
CCACAAACCACCGACATCGGAGCAGTATCACTACCCCCTCCCACATTTTT
TGCCGCGACCGCCAGCAACGACGACCATGCATCCCCGCCCTCCGCACCTC
CTGAGGCACTAATGGAGAAGGAGCTAAAAAGGCTCCGCAAGAAGGCAGCC
AAAGAGGCAAGGCGGGAGAAACGGGAAAGCAAAAGCCTCTCGCTCAAGCC
CTGCGATTTGTGTCATCGGGATCGCGACCTTTTGATCCGATGCCAAATTG
ACACGTCTTCAAATTGGTTTATGGTCTGTGGAAAATGCTGGAAGGACGTG
AGCGGTGGAGTAGCCGATGGTGATGAGGCCCACCCATATTACCGATATGG
CGGGCTCTGGAAAGCAAGGTGAAAGGTGGAGCCAACAAAGAGTGAGTAAT
TTGGTGTACATGACGTGTGAAAAAACAAGCAACCGTGAAACTA
back to top

protein sequence of jgi.p|Nanoce1779_2|587753

>mRNA_4750-protein ID=mRNA_4750-protein|Name=jgi.p|Nanoce1779_2|587753|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MQQQAWVQTASAGLSLTTFSSSFLSPCFSFGAHSHRIDRLRVLSNLPTTL
RWQQDFTMIAASGSNDDDGQLPQTTDIGAVSLPPPTFFAATASNDDHASP
PSAPPEALMEKELKRLRKKAAKEARREKRESKSLSLKPCDLCHRDRDLLI
RCQIDTSSNWFMVCGKCWKDVSGGVADGDEAHPYYRYGGLWKAR*
back to top

mRNA from alignment at scaffold_9:542758..543500-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4750 ID=mRNA_4750|Name=jgi.p|Nanoce1779_2|587753|organism=Nannochloropsis oceanica|type=mRNA|length=743bp|location=Sequence derived from alignment at scaffold_9:542758..543500- (Nannochloropsis oceanica)
AGCACGAGATCCTAGGTAAACCTTCTACAAGCAGACAAGCAGCATAAGCA
GCCTCCCCGCGTCTCCCTTTCCGGCCATCACAACTGCATGCAACAACAGG
CCTGGGTTCAGACTGCCAGTGCAGGGCTTTCGCTCACAACTTTCTCGAGC
TCTTTCTTGTCGCCCTGCTTTTCCTTTGGAGCGCACAGCCACAGGATCGA
CCGTCTGCGTGTGCTTTCCAACCTCCCCACAACTCTGCGCTGGCAACAGG
ACTTCACCATGATAGCAGCAAGCGGAAGCAATGACGACGATGGACAACTC
CCACAAACCACCGACATCGGAGCAGTATCACTACCCCCTCCCACATTTTT
TGCCGCGACCGCCAGCAACGACGACCATGCATCCCCGCCCTCCGCACCTC
CTGAGGCACTAATGGAGAAGGAGCTAAAAAGGCTCCGCAAGAAGGCAGCC
AAAGAGGCAAGGCGGGAGAAACGGGAAAGCAAAAGCCTCTCGCTCAAGCC
CTGCGATTTGTGTCATCGGGATCGCGACCTTTTGATCCGATGCCAAATTG
ACACGTCTTCAAATTGGTTTATGGTCTGTGGAAAATGCTGGAAGGACGTG
AGCGGTGGAGTAGCCGATGGTGATGAGGCCCACCCATATTACCGATATGG
CGGGCTCTGGAAAGCAAGGTGAAAGGTGGAGCCAACAAAGAGTGAGTAAT
TTGGTGTACATGACGTGTGAAAAAACAAGCAACCGTGAAACTA
back to top

Coding sequence (CDS) from alignment at scaffold_9:542758..543500-

>mRNA_4750 ID=mRNA_4750|Name=jgi.p|Nanoce1779_2|587753|organism=Nannochloropsis oceanica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_9:542758..543500- (Nannochloropsis oceanica)
ATGCAACAACAGGCCTGGGTTCAGACTGCCAGTGCAGGGCTTTCGCTCAC
AACTTTCTCGAGCTCTTTCTTGTCGCCCTGCTTTTCCTTTGGAGCGCACA
GCCACAGGATCGACCGTCTGCGTGTGCTTTCCAACCTCCCCACAACTCTG
CGCTGGCAACAGGACTTCACCATGATAGCAGCAAGCGGAAGCAATGACGA
CGATGGACAACTCCCACAAACCACCGACATCGGAGCAGTATCACTACCCC
CTCCCACATTTTTTGCCGCGACCGCCAGCAACGACGACCATGCATCCCCG
CCCTCCGCACCTCCTGAGGCACTAATGGAGAAGGAGCTAAAAAGGCTCCG
CAAGAAGGCAGCCAAAGAGGCAAGGCGGGAGAAACGGGAAAGCAAAAGCC
TCTCGCTCAAGCCCTGCGATTTGTGTCATCGGGATCGCGACCTTTTGATC
CGATGCCAAATTGACACGTCTTCAAATTGGTTTATGGTCTGTGGAAAATG
CTGGAAGGACGTGAGCGGTGGAGTAGCCGATGGTGATGAGGCCCACCCAT
ATTACCGATATGGCGGGCTCTGGAAAGCAAGGTGA
back to top
Synonyms
Publications