jgi.p|Nanoce1779_2|587752, mRNA_4749 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587752
Unique NamemRNA_4749
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length873
Alignment locationscaffold_9:541859..542731 +

Link to JBrowse

Properties
Property NameValue
TranscriptId587838
TrackFilteredModels2
ProteinId587752
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:541859..542731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587752gene_4749Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587752mRNA_4749-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4749CDS_4749Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4749 ID=mRNA_4749|Name=jgi.p|Nanoce1779_2|587752|organism=Nannochloropsis oceanica|type=mRNA|length=873bp
AGGAAATTTAATGGTTGCCTCCTCGTCTTATGGCTTGATTGCAATTTTCG
ATGCCGACCGTGGCTGGAAGCCAGCGATTAGATTTCAGGGGCATTCGTCA
TCGTGGATAAGAACATTACATTTAGACATAAATAGACATCTATTGATTAG
TGGATCGGCAGATTCGACGTGCAAGGCCTGGGATCTGCGACGAGCAGGAG
AGGTGCTTATGAGGTATGTGCACCCGAATCATTTTGAAGAGATTAGAGGC
GTGGAGTGCGTGGGAAATCGCTTGTTTACTGGATGTTATGATGGGATGGT
GAGAGAGTATGAGTTGGATTCGGGGTGCTTAAAGGGGGTGGTGGCGAATC
ATGGTGTGTATGCTGTAGAATGCTTGTCGCTGTCCCGGGATACGGGGAGG
ATGGTAAGTGTTGATTGGGATGGGGTTCTGGCGGTGCGGAAAGGCCGACC
GTTGATTGATTTAGAGCCGGAGGCTGCGAAGGAGGATACAAGCGTGCTTT
GCTTTGGAGAGCGATTTGAAGAGGGGTGGATGGAAGAGACTGGGCTTGGC
TCTAGCTTAAGCAGTTTTGTTTCTGAAGGATGTGGAAATAATTCGTATTT
ACGGCCGGATTACGGTTGCGAGGCATTGAGAGGTCCAGGTAGGAGGATTA
CGTGTGATGTGCTCGGGCCTGCATTAGACCGTAAGGAGGACCTGGAGTCG
TCTTTGAATGCCAAGGTGATTTGTATGCAACATAACCAGGAGAGGTTGGT
GATGGGGACTAAAAGTGGGGATGTAATTTCCCTTTTGTTTAGAAAGGGAT
TATCTGGTGAGGTGTGAATGTGTTATTTAAAAAGTTTAGACGAGAAAAGA
ATTGCACCCATAAATGTCTTTCT
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protein sequence of jgi.p|Nanoce1779_2|587752

>mRNA_4749-protein ID=mRNA_4749-protein|Name=jgi.p|Nanoce1779_2|587752|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MVASSSYGLIAIFDADRGWKPAIRFQGHSSSWIRTLHLDINRHLLISGSA
DSTCKAWDLRRAGEVLMRYVHPNHFEEIRGVECVGNRLFTGCYDGMVREY
ELDSGCLKGVVANHGVYAVECLSLSRDTGRMVSVDWDGVLAVRKGRPLID
LEPEAAKEDTSVLCFGERFEEGWMEETGLGSSLSSFVSEGCGNNSYLRPD
YGCEALRGPGRRITCDVLGPALDRKEDLESSLNAKVICMQHNQERLVMGT
KSGDVISLLFRKGLSGEV*
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mRNA from alignment at scaffold_9:541859..542731+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4749 ID=mRNA_4749|Name=jgi.p|Nanoce1779_2|587752|organism=Nannochloropsis oceanica|type=mRNA|length=873bp|location=Sequence derived from alignment at scaffold_9:541859..542731+ (Nannochloropsis oceanica)
AGGAAATTTAATGGTTGCCTCCTCGTCTTATGGCTTGATTGCAATTTTCG
ATGCCGACCGTGGCTGGAAGCCAGCGATTAGATTTCAGGGGCATTCGTCA
TCGTGGATAAGAACATTACATTTAGACATAAATAGACATCTATTGATTAG
TGGATCGGCAGATTCGACGTGCAAGGCCTGGGATCTGCGACGAGCAGGAG
AGGTGCTTATGAGGTATGTGCACCCGAATCATTTTGAAGAGATTAGAGGC
GTGGAGTGCGTGGGAAATCGCTTGTTTACTGGATGTTATGATGGGATGGT
GAGAGAGTATGAGTTGGATTCGGGGTGCTTAAAGGGGGTGGTGGCGAATC
ATGGTGTGTATGCTGTAGAATGCTTGTCGCTGTCCCGGGATACGGGGAGG
ATGGTAAGTGTTGATTGGGATGGGGTTCTGGCGGTGCGGAAAGGCCGACC
GTTGATTGATTTAGAGCCGGAGGCTGCGAAGGAGGATACAAGCGTGCTTT
GCTTTGGAGAGCGATTTGAAGAGGGGTGGATGGAAGAGACTGGGCTTGGC
TCTAGCTTAAGCAGTTTTGTTTCTGAAGGATGTGGAAATAATTCGTATTT
ACGGCCGGATTACGGTTGCGAGGCATTGAGAGGTCCAGGTAGGAGGATTA
CGTGTGATGTGCTCGGGCCTGCATTAGACCGTAAGGAGGACCTGGAGTCG
TCTTTGAATGCCAAGGTGATTTGTATGCAACATAACCAGGAGAGGTTGGT
GATGGGGACTAAAAGTGGGGATGTAATTTCCCTTTTGTTTAGAAAGGGAT
TATCTGGTGAGGTGTGAATGTGTTATTTAAAAAGTTTAGACGAGAAAAGA
ATTGCACCCATAAATGTCTTTCT
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Coding sequence (CDS) from alignment at scaffold_9:541859..542731+

>mRNA_4749 ID=mRNA_4749|Name=jgi.p|Nanoce1779_2|587752|organism=Nannochloropsis oceanica|type=CDS|length=807bp|location=Sequence derived from alignment at scaffold_9:541859..542731+ (Nannochloropsis oceanica)
ATGGTTGCCTCCTCGTCTTATGGCTTGATTGCAATTTTCGATGCCGACCG
TGGCTGGAAGCCAGCGATTAGATTTCAGGGGCATTCGTCATCGTGGATAA
GAACATTACATTTAGACATAAATAGACATCTATTGATTAGTGGATCGGCA
GATTCGACGTGCAAGGCCTGGGATCTGCGACGAGCAGGAGAGGTGCTTAT
GAGGTATGTGCACCCGAATCATTTTGAAGAGATTAGAGGCGTGGAGTGCG
TGGGAAATCGCTTGTTTACTGGATGTTATGATGGGATGGTGAGAGAGTAT
GAGTTGGATTCGGGGTGCTTAAAGGGGGTGGTGGCGAATCATGGTGTGTA
TGCTGTAGAATGCTTGTCGCTGTCCCGGGATACGGGGAGGATGGTAAGTG
TTGATTGGGATGGGGTTCTGGCGGTGCGGAAAGGCCGACCGTTGATTGAT
TTAGAGCCGGAGGCTGCGAAGGAGGATACAAGCGTGCTTTGCTTTGGAGA
GCGATTTGAAGAGGGGTGGATGGAAGAGACTGGGCTTGGCTCTAGCTTAA
GCAGTTTTGTTTCTGAAGGATGTGGAAATAATTCGTATTTACGGCCGGAT
TACGGTTGCGAGGCATTGAGAGGTCCAGGTAGGAGGATTACGTGTGATGT
GCTCGGGCCTGCATTAGACCGTAAGGAGGACCTGGAGTCGTCTTTGAATG
CCAAGGTGATTTGTATGCAACATAACCAGGAGAGGTTGGTGATGGGGACT
AAAAGTGGGGATGTAATTTCCCTTTTGTTTAGAAAGGGATTATCTGGTGA
GGTGTGA
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Synonyms
Publications