jgi.p|Nanoce1779_2|587750, mRNA_4748 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587750
Unique NamemRNA_4748
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1086
Alignment locationscaffold_9:540758..541843 +

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Properties
Property NameValue
TranscriptId587836
TrackFilteredModels2
ProteinId587750
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:540758..541843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587750gene_4748Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587750mRNA_4748-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4748CDS_4748Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4748 ID=mRNA_4748|Name=jgi.p|Nanoce1779_2|587750|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp
CAATGATCGTGACGACGGCCCCGATGTCTAACGCCCTTCAACAAGGCAAA
TGCTCAACACCAATTCCAATTTCACCGCAAAAGGCAACGGCATCACAACC
AGACCTTCATTTGTCAAGGGAAACACCCAATTGCAAACGTTGCAATGTGC
TTGACTTATTGATTCCATTCTCCAAACCCCGCCTCCACAACCTCAGCCTT
CACCATCTCACATGCAGGTGACAGACGCCCAAGAACATGTTACCCCGATC
CCGAGCCCCACCGATCCCTTCGCACCACTCAGCCAAGACGTGAGTGGTCT
CCTATATAAATTCCTCTCCGTGCGGGATTTGGTATCCTTGAGCACTGTTT
CCCACTTTCTGTACGAGAACGTCGCGCATCAGCAGCACTGGTTCGATTTG
TGCGCGCGGCGGTGGCCTAGCTTGCGTGCATCCCTGGAAGCATCCTCATC
GTCGCCCCAATCAGGCAATACAGCGCTGACCCATGCACCTTTCTTTCCTT
CTACACGAGCATACATTAATGCGGGCGATGTCATAAACAAGACGTGCTTC
CGCTCTACTTTTCTGCAGCACGCGGAAGCTGAGATGAACTGGCGGCGGAC
GCGGCCCGTCCATGTCACACAAGAGCGGCTCGTCTTCCGGCACACAGACA
CAGGGGGAATACAATCGGAACCTGTGACATCAATCACTTTATCGAAAACC
GGAGGCCGCGAGCTAATGTCCATTGCGATGGGGCGTCACGTCGGTGTTTT
CAGAGCAGATGCCTCTGGAGAAATTTCAGTGCATGAAGGCCCGCAGCTCT
TGATAGACGTGCTGAACAAGGGACGTACGAATACCAAAAATCGTATAATC
AACAGCACGAAGATCTCGTCATCCAAGCTTGTGGCCACTGGGAACGACCA
TTCCCTCAGGATGATCGACTTGGCGACAGGTTCCCAGCATACATTTATGG
AGCAGCACACTGATAGTGTCTGGGGGCTAAGTCTCGACAGAGGTAGTAGC
ACCAATTGGGACGAGGATGTACTCGGGGTCTACACCACTAGCGACAATGC
CATCGACAACAACAACAGCAGCAGCGGCAGCAGCAG
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protein sequence of jgi.p|Nanoce1779_2|587750

>mRNA_4748-protein ID=mRNA_4748-protein|Name=jgi.p|Nanoce1779_2|587750|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MQVTDAQEHVTPIPSPTDPFAPLSQDVSGLLYKFLSVRDLVSLSTVSHFL
YENVAHQQHWFDLCARRWPSLRASLEASSSSPQSGNTALTHAPFFPSTRA
YINAGDVINKTCFRSTFLQHAEAEMNWRRTRPVHVTQERLVFRHTDTGGI
QSEPVTSITLSKTGGRELMSIAMGRHVGVFRADASGEISVHEGPQLLIDV
LNKGRTNTKNRIINSTKISSSKLVATGNDHSLRMIDLATGSQHTFMEQHT
DSVWGLSLDRGSSTNWDEDVLGVYTTSDNAIDNNNSSSGSS
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mRNA from alignment at scaffold_9:540758..541843+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4748 ID=mRNA_4748|Name=jgi.p|Nanoce1779_2|587750|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp|location=Sequence derived from alignment at scaffold_9:540758..541843+ (Nannochloropsis oceanica)
CAATGATCGTGACGACGGCCCCGATGTCTAACGCCCTTCAACAAGGCAAA
TGCTCAACACCAATTCCAATTTCACCGCAAAAGGCAACGGCATCACAACC
AGACCTTCATTTGTCAAGGGAAACACCCAATTGCAAACGTTGCAATGTGC
TTGACTTATTGATTCCATTCTCCAAACCCCGCCTCCACAACCTCAGCCTT
CACCATCTCACATGCAGGTGACAGACGCCCAAGAACATGTTACCCCGATC
CCGAGCCCCACCGATCCCTTCGCACCACTCAGCCAAGACGTGAGTGGTCT
CCTATATAAATTCCTCTCCGTGCGGGATTTGGTATCCTTGAGCACTGTTT
CCCACTTTCTGTACGAGAACGTCGCGCATCAGCAGCACTGGTTCGATTTG
TGCGCGCGGCGGTGGCCTAGCTTGCGTGCATCCCTGGAAGCATCCTCATC
GTCGCCCCAATCAGGCAATACAGCGCTGACCCATGCACCTTTCTTTCCTT
CTACACGAGCATACATTAATGCGGGCGATGTCATAAACAAGACGTGCTTC
CGCTCTACTTTTCTGCAGCACGCGGAAGCTGAGATGAACTGGCGGCGGAC
GCGGCCCGTCCATGTCACACAAGAGCGGCTCGTCTTCCGGCACACAGACA
CAGGGGGAATACAATCGGAACCTGTGACATCAATCACTTTATCGAAAACC
GGAGGCCGCGAGCTAATGTCCATTGCGATGGGGCGTCACGTCGGTGTTTT
CAGAGCAGATGCCTCTGGAGAAATTTCAGTGCATGAAGGCCCGCAGCTCT
TGATAGACGTGCTGAACAAGGGACGTACGAATACCAAAAATCGTATAATC
AACAGCACGAAGATCTCGTCATCCAAGCTTGTGGCCACTGGGAACGACCA
TTCCCTCAGGATGATCGACTTGGCGACAGGTTCCCAGCATACATTTATGG
AGCAGCACACTGATAGTGTCTGGGGGCTAAGTCTCGACAGAGGTAGTAGC
ACCAATTGGGACGAGGATGTACTCGGGGTCTACACCACTAGCGACAATGC
CATCGACAACAACAACAGCAGCAGCGGCAGCAGCAG
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Coding sequence (CDS) from alignment at scaffold_9:540758..541843+

>mRNA_4748 ID=mRNA_4748|Name=jgi.p|Nanoce1779_2|587750|organism=Nannochloropsis oceanica|type=CDS|length=875bp|location=Sequence derived from alignment at scaffold_9:540758..541843+ (Nannochloropsis oceanica)
ATGCAGGTGACAGACGCCCAAGAACATGTTACCCCGATCCCGAGCCCCAC
CGATCCCTTCGCACCACTCAGCCAAGACGTGAGTGGTCTCCTATATAAAT
TCCTCTCCGTGCGGGATTTGGTATCCTTGAGCACTGTTTCCCACTTTCTG
TACGAGAACGTCGCGCATCAGCAGCACTGGTTCGATTTGTGCGCGCGGCG
GTGGCCTAGCTTGCGTGCATCCCTGGAAGCATCCTCATCGTCGCCCCAAT
CAGGCAATACAGCGCTGACCCATGCACCTTTCTTTCCTTCTACACGAGCA
TACATTAATGCGGGCGATGTCATAAACAAGACGTGCTTCCGCTCTACTTT
TCTGCAGCACGCGGAAGCTGAGATGAACTGGCGGCGGACGCGGCCCGTCC
ATGTCACACAAGAGCGGCTCGTCTTCCGGCACACAGACACAGGGGGAATA
CAATCGGAACCTGTGACATCAATCACTTTATCGAAAACCGGAGGCCGCGA
GCTAATGTCCATTGCGATGGGGCGTCACGTCGGTGTTTTCAGAGCAGATG
CCTCTGGAGAAATTTCAGTGCATGAAGGCCCGCAGCTCTTGATAGACGTG
CTGAACAAGGGACGTACGAATACCAAAAATCGTATAATCAACAGCACGAA
GATCTCGTCATCCAAGCTTGTGGCCACTGGGAACGACCATTCCCTCAGGA
TGATCGACTTGGCGACAGGTTCCCAGCATACATTTATGGAGCAGCACACT
GATAGTGTCTGGGGGCTAAGTCTCGACAGAGGTAGTAGCACCAATTGGGA
CGAGGATGTACTCGGGGTCTACACCACTAGCGACAATGCCATCGACAACA
ACAACAGCAGCAGCGGCAGCAGCAG
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Synonyms
Publications