jgi.p|Nanoce1779_2|587731, mRNA_4743 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587731
Unique NamemRNA_4743
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length841
Alignment locationscaffold_9:524414..525873 +

Link to JBrowse

Properties
Property NameValue
TranscriptId587817
TrackFilteredModels2
ProteinId587731
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:524414..525873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587731gene_4743Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587731mRNA_4743-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4743CDS_4743Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4743 ID=mRNA_4743|Name=jgi.p|Nanoce1779_2|587731|organism=Nannochloropsis oceanica|type=mRNA|length=841bp
GCGGCAGGTGCGGCAGGTGCGGCAGGCGCGGCAGGTGCAGCAGGTGCGAC
AGGTGCGGGCTTGGCAATAGAAGCAGGGGCAGCAGCAGGTGCAGCAGCAG
GCTTGGGTGATGTCTTCTTGATGTCCTTGACGATGGGTGCAGGTTCTTCG
GGCTTGGGGAGCAGGACGAAGGCGCCAATCGCACCAGTGGAGGCGAGAAT
CAATCCCACGGAGGCAGCGAGGCGAAAAGCGTCAGAAGGACCCGGGGCCA
GAGGCTTACGAGCACGTTGCTGGCGAATGACGTATTCCTTGCGCGCCGCC
TCCTCAATGGCCTTCTTTTTCTCAGCATCGGCAATAGCCTTTGCCTTGCC
CGTCAGGGCATTGCTGACGGCGCTGGCACCAGCGACAGTAGCGAGGAGAG
CACCACCCAAGACACCGGCCGTACCAAAGTCGGCACCAGCACCGGTGGCG
GCGGGGACGACAGGCGCGCTGGGCTCCACAGCCGAGACAGACTTGGCCTT
CGTGACAACAGCGGCGGGGGCACTCAGGGCCTTGGCCATCTCCTTAGTAA
CCTTGACGGCAGTGGGCTTCGTCGTCTTGGCCACGACCGCGCTCTTCGTC
GCGGTCGGTGCGGGGGTGGTCGACTTGCTCTGAAACAAGGAGAAACCAGA
TTGTTTGACGGGGGTGGGAGCCATGGGCATAGGTCCCTTGGCGCTCAGGG
GCTTGCTCGCAAGCTTGGCCTCGAGGTCGGCTAGGCTGGCCATGATGCGG
CCACGGCTTCTGGTGCTGGGTACATGGCCCATGAAGGCGCAGGCCACGCC
CAAGAGAGCCAAGAGTAGAAGACACTTGAACATTGTCCTGT
back to top

protein sequence of jgi.p|Nanoce1779_2|587731

>mRNA_4743-protein ID=mRNA_4743-protein|Name=jgi.p|Nanoce1779_2|587731|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MSLTMGAGSSGLGSRTKAPIAPVEARINPTEAARRKASEGPGARGLRARC
WRMTYSLRAASSMAFFFSASAIAFALPVRALLTALAPATVARRAPPKTPA
VPKSAPAPVAAGTTGALGSTAETDLAFVTTAAGALRALAISLVTLTAVGF
VVLATTALFVAVGAGVVDLL*
back to top

mRNA from alignment at scaffold_9:524414..525873+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4743 ID=mRNA_4743|Name=jgi.p|Nanoce1779_2|587731|organism=Nannochloropsis oceanica|type=mRNA|length=1460bp|location=Sequence derived from alignment at scaffold_9:524414..525873+ (Nannochloropsis oceanica)
GCGGCAGGTGCGGCAGGTGCGGCAGGCGCGGCAGGTGCAGCAGGTGCGAC
AGGTGCGGGCTTGGCAATAGAAGCAGGGGCAGCAGCAGGTGCAGCAGCAG
GCTTGGGTGATGTCTTCTTGATGTCCTTGACGATGGGTGCAGGTTCTTCG
GGCTTGGGGAGCAGGACGAAGGCGCCAATCGCACCAGTGGAGGCGAGAAT
CAATCCCACGGAGGCAGCGAGGCGAAAAGCGTCAGAAGGACCCGGGGCCA
GAGGCTTACGAGCACGTTGCTGGCGAATGACGTATTCCTTGCGCGCCGCC
TCCTCAATGGCCTTCTTTTTCTCAGCATCGGCAATAGCCTTTGCCTTGCC
CGTCAGGGCATTGCTGACGGCGCTGGCACCAGCGACAGTAGCGAGGAGAG
CACCACCCAAGACACCGGCCGTACCAAAGTCGGCACCAGCACCGGTGGCG
GCGGGGACGACAGGCGCGCTGGGCTCCACAGCCGAGACTGTCGAGTGTAG
GATGGATGAGAGGAAGGAGTCCATATCATATTCTTTTCATTTTTTTTTAT
TCATTTCATTTTTCTGGTACTTGTCAGTGGATTAATAAGGTCCCCTTCAG
ATTCGTTTTATTTGCATGCTAAGTGTTAGTTTCATGATTGCTGCCATTTC
TTCCCTCCTCTCCAAGGACCCACACCCCGATGATAAAGCCATTCACTAAG
TTTATCTGCCTCGCTTCATATTAAAAGACAGAAGACAAGAGCAGCCATAC
CAGCGGTAGGTGAGCATACCAAAAGGAGGATGTGAGTTACATGAAGAGTA
GAAAAGAGAGGAGGCAGCCCTCGATCGAATCCCCTGCGCTAGGTTTCGCA
GTTCATCAAGGGGGACCTTGCGCGGCGTCAAGCGCGCCTTCCCATAGACA
GAGACAAAGACACAGAGAAAACATACAAATTGTCACAAAAGGATAAAGAC
AGATAACTCAGACCTGTGTGCAAACAGACAGGCTGACAGACAGACAGACA
AACGGAAACCTACACAAAGACACTCCCCCGACCCAGACTCCAATCTGGCA
ATAAAAAATATGACGGAGAGCTACATTATCTCAGCTAATGAAACACACAG
ACGTACCAGACTTGGCCTTCGTGACAACAGCGGCGGGGGCACTCAGGGCC
TTGGCCATCTCCTTAGTAACCTTGACGGCAGTGGGCTTCGTCGTCTTGGC
CACGACCGCGCTCTTCGTCGCGGTCGGTGCGGGGGTGGTCGACTTGCTCT
GAAACAAGGAGAAACCAGATTGTTTGACGGGGGTGGGAGCCATGGGCATA
GGTCCCTTGGCGCTCAGGGGCTTGCTCGCAAGCTTGGCCTCGAGGTCGGC
TAGGCTGGCCATGATGCGGCCACGGCTTCTGGTGCTGGGTACATGGCCCA
TGAAGGCGCAGGCCACGCCCAAGAGAGCCAAGAGTAGAAGACACTTGAAC
ATTGTCCTGT
back to top

Coding sequence (CDS) from alignment at scaffold_9:524414..525873+

>mRNA_4743 ID=mRNA_4743|Name=jgi.p|Nanoce1779_2|587731|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_9:524414..525873+ (Nannochloropsis oceanica)
ATGTCCTTGACGATGGGTGCAGGTTCTTCGGGCTTGGGGAGCAGGACGAA
GGCGCCAATCGCACCAGTGGAGGCGAGAATCAATCCCACGGAGGCAGCGA
GGCGAAAAGCGTCAGAAGGACCCGGGGCCAGAGGCTTACGAGCACGTTGC
TGGCGAATGACGTATTCCTTGCGCGCCGCCTCCTCAATGGCCTTCTTTTT
CTCAGCATCGGCAATAGCCTTTGCCTTGCCCGTCAGGGCATTGCTGACGG
CGCTGGCACCAGCGACAGTAGCGAGGAGAGCACCACCCAAGACACCGGCC
GTACCAAAGTCGGCACCAGCACCGGTGGCGGCGGGGACGACAGGCGCGCT
GGGCTCCACAGCCGAGACAGACTTGGCCTTCGTGACAACAGCGGCGGGGG
CACTCAGGGCCTTGGCCATCTCCTTAGTAACCTTGACGGCAGTGGGCTTC
GTCGTCTTGGCCACGACCGCGCTCTTCGTCGCGGTCGGTGCGGGGGTGGT
CGACTTGCTCTGAATGTCCTTGACGATGGGTGCAGGTTCTTCGGGCTTGG
GGAGCAGGACGAAGGCGCCAATCGCACCAGTGGAGGCGAGAATCAATCCC
ACGGAGGCAGCGAGGCGAAAAGCGTCAGAAGGACCCGGGGCCAGAGGCTT
ACGAGCACGTTGCTGGCGAATGACGTATTCCTTGCGCGCCGCCTCCTCAA
TGGCCTTCTTTTTCTCAGCATCGGCAATAGCCTTTGCCTTGCCCGTCAGG
GCATTGCTGACGGCGCTGGCACCAGCGACAGTAGCGAGGAGAGCACCACC
CAAGACACCGGCCGTACCAAAGTCGGCACCAGCACCGGTGGCGGCGGGGA
CGACAGGCGCGCTGGGCTCCACAGCCGAGACAGACTTGGCCTTCGTGACA
ACAGCGGCGGGGGCACTCAGGGCCTTGGCCATCTCCTTAGTAACCTTGAC
GGCAGTGGGCTTCGTCGTCTTGGCCACGACCGCGCTCTTCGTCGCGGTCG
GTGCGGGGGTGGTCGACTTGCTCTGA
back to top
Synonyms
Publications