jgi.p|Nanoce1779_2|670508, mRNA_4742 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|670508
Unique Name	mRNA_4742
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1275
Alignment location	scaffold_9:521917..523359 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	670594
Track	FilteredModels2
ProteinId	670508

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:521917..523359 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670508	gene_4742	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670508	mRNA_4742-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4742	CDS_4742	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:521917..523359+
coding sequence from alignment at scaffold_9:521917..523359+

mRNA sequence

>mRNA_4742 ID=mRNA_4742|Name=jgi.p|Nanoce1779_2|670508|organism=Nannochloropsis oceanica|type=mRNA|length=1275bp
ACAGACACACCTCATATAGACAGCCGCCTCCGGCAGCAGCACGACGGCCG
CGACAACAATAGAGGCGTGCCCACCAAGGCGCCGAGGACTTGAAGTGGTC
CCTGTGGCCAAGCTTCAATGACACCCGTCGTCCTGCGACCTCCTGCCTCC
CTAGTCGTTATGGTCCTCTATTCAGTGGTCGCCGCCGGCAGGACGTGGTC
GTACCACCAAGCTTCATGCGCCGTATTCTCCAGTAGGAGAGCACTCCAGA
CAGCCGCCTTCATCTGTGGCACCCGCAGCGCACCATCATCGGTCCGACGA
CGGGAGCAACAACCATGGCATGCGTCTCTCCCCTTCTCTTCTTCCTCCCA
CTCCTCCTCCTCCTCCATTCCACTACGATCGACCAGCACGAGCACCATCC
AGTCAGCAGCCATCCTAAAAGCAGAGCAGCTCTTCCCCACCTCCTTCGAA
ATGGACATCCCACCCATGGGGCACGTATTGGGTTTGCGCCTCCCCCTCCC
TTCTTCCTCCTCCGCCACCAATCACCATGACACCCCTCATTCCTCTGATG
ATACCGAACTCGACCTCTCTCTTCTCGTGGACGGCAAAAAAGAGTCAGAT
CTTTTACATCCCAAAGAGCTGCAGCTGGCACTAGAAATGAGCAACATTGA
GGCACGTCTCGCCTTTGTTGGTGGACGATTAGCCCTCCGCCGAAACCTCC
GCTCACTTCCACGTCCCGCGAGCATTGAGCAGGCGGTGTTGCGTGAAGAG
GGTGGAGCACCTTCTTTGCCCCCGCATGTACAGGCCTCTATAAGTCATAA
GAAGGATTTGGCCGTATGCCTCTTGAGGGGGGTGAGGGAGGAGGAGGAGG
GAGAGAAGATTGCTTCCTCTCACATCGGGGTGGATGTGGAGGTGTGTGAG
CCGCGGACAAGAACTAGTAGTATCGCCACGCGTGTGCTGACATTGAAAGA
GAGGAATGGTTTGGGGGCATTGAAATCTGTGGGAATAAGCGCTGAGAGTG
AGATTTTGTTGAGGTTTTCCTTCAAGGAAAGTGTGTACAAAGCGATACAC
CCTTTTGTCCGCCGCTACGTGGCGTTTCACGAGGCGGAGGTCACGCCACG
GGTTGATGGGACGTGTGCGATTGTGTTGTTGTTGACGGGCGGAGAGGAGG
AGGAGGGTGGATTTGAAGTGAAGGGGGAGTGGAGGAGGGTGGAAGGGGGA
AGGTTCTTTTTGACGGCGGTGGCGGTGACGAAGGTGAGGGAGGGGAGGGT
GGGTTTGGTGCACTTAAAGTTCTGA

protein sequence of jgi.p|Nanoce1779_2|670508

>mRNA_4742-protein ID=mRNA_4742-protein|Name=jgi.p|Nanoce1779_2|670508|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MTPVVLRPPASLVVMVLYSVVAAGRTWSYHQASCAVFSSRRALQTAAFIC
GTRSAPSSVRRREQQPWHASLPFSSSSHSSSSSIPLRSTSTSTIQSAAIL
KAEQLFPTSFEMDIPPMGHVLGLRLPLPSSSSATNHHDTPHSSDDTELDL
SLLVDGKKESDLLHPKELQLALEMSNIEARLAFVGGRLALRRNLRSLPRP
ASIEQAVLREEGGAPSLPPHVQASISHKKDLAVCLLRGVREEEEGEKIAS
SHIGVDVEVCEPRTRTSSIATRVLTLKERNGLGALKSVGISAESEILLRF
SFKESVYKAIHPFVRRYVAFHEAEVTPRVDGTCAIVLLLTGGEEEEGGFE
VKGEWRRVEGGRFFLTAVAVTKVREGRVGLVHLKF*

mRNA from alignment at scaffold_9:521917..523359+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4742 ID=mRNA_4742|Name=jgi.p|Nanoce1779_2|670508|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp|location=Sequence derived from alignment at scaffold_9:521917..523359+ (Nannochloropsis oceanica)
ACAGACACACCTCATATAGACAGCCGCCTCCGGCAGCAGCACGACGGCCG
CGACAACAATAGAGGCGTGCCCACCAAGGCGCCGAGGACTTGAAGTGGTC
CCTGTGGCCAAGCTTCAATGACACCCGTCGTCCTGCGACCTCCTGCCTCC
CTAGTCGTTATGGTACGTGCGGCCCCCCTGGCCCCTGTCCCTTGGGCCTT
TGGCTCATCCTCGACATAATCTCTCATCAGGTCCTCTATTCAGTGGTCGC
CGCCGGCAGGACGTGGTCGTACCACCAAGCTTCATGCGCCGTATTCTCCA
GTAGGAGAGCACTCCAGACAGGTACAATGACGAGAGGGGCGATTAGCGTG
ACGGTTTGACCACTATCTCATCACACCAGACCACCCTCCATCCCACCATC
TCCTTCTCCATCTTAAATAAGCCGCCTTCATCTGTGGCACCCGCAGCGCA
CCATCATCGGTCCGACGACGGGAGCAACAACCATGGCATGCGTCTCTCCC
CTTCTCTTCTTCCTCCCACTCCTCCTCCTCCTCCATTCCACTACGATCGA
CCAGCACGAGCACCATCCAGTCAGCAGCCATCCTAAAAGCAGAGCAGCTC
TTCCCCACCTCCTTCGAAATGGACATCCCACCCATGGGGCACGTATTGGG
TTTGCGCCTCCCCCTCCCTTCTTCCTCCTCCGCCACCAATCACCATGACA
CCCCTCATTCCTCTGATGATACCGAACTCGACCTCTCTCTTCTCGTGGAC
GGCAAAAAAGAGTCAGATCTTTTACATCCCAAAGAGCTGCAGCTGGCACT
AGAAATGAGCAACATTGAGGCACGTCTCGCCTTTGTTGGTGGACGATTAG
CCCTCCGCCGAAACCTCCGCTCACTTCCACGTCCCGCGAGCATTGAGCAG
GCGGTGTTGCGTGAAGAGGGTGGAGCACCTTCTTTGCCCCCGCATGTACA
GGCCTCTATAAGTCATAAGAAGGATTTGGCCGTATGCCTCTTGAGGGGGG
TGAGGGAGGAGGAGGAGGGAGAGAAGATTGCTTCCTCTCACATCGGGGTG
GATGTGGAGGTGTGTGAGCCGCGGACAAGAACTAGTAGTATCGCCACGCG
TGTGCTGACATTGAAAGAGAGGAATGGTTTGGGGGCATTGAAATCTGTGG
GAATAAGCGCTGAGAGTGAGATTTTGTTGAGGTTTTCCTTCAAGGAAAGT
GTGTACAAAGCGATACACCCTTTTGTCCGCCGCTACGTGGCGTTTCACGA
GGCGGAGGTCACGCCACGGGTTGATGGGACGTGTGCGATTGTGTTGTTGT
TGACGGGCGGAGAGGAGGAGGAGGGTGGATTTGAAGTGAAGGGGGAGTGG
AGGAGGGTGGAAGGGGGAAGGTTCTTTTTGACGGCGGTGGCGGTGACGAA
GGTGAGGGAGGGGAGGGTGGGTTTGGTGCACTTAAAGTTCTGA

Coding sequence (CDS) from alignment at scaffold_9:521917..523359+

>mRNA_4742 ID=mRNA_4742|Name=jgi.p|Nanoce1779_2|670508|organism=Nannochloropsis oceanica|type=CDS|length=3474bp|location=Sequence derived from alignment at scaffold_9:521917..523359+ (Nannochloropsis oceanica)
ATGACACCCGTCGTCCTGCGACCTCCTGCCTCCCTAGTCGTTATGGTCCT
CTATTCAGTGGTCGCCGCCGGCAGGACGTGGTCGTACCACCAAGCTTCAT
GCGCCGTATTCTCCAGTAGGAGAGCACTCCAGACAGCCGCCTTCATCTGT
GGCACCCGCAGCGCACCATCATCGGTCCGACGACGGGAGCAACAACCATG
GCATGCGTCTCTCCCCTTCTCTTCTTCCTCCCACTCCTCCTCCTCCTCCA
TTCCACTACGATCGACCAGCACGAGCACCATCCAGTCAGCAGCCATCCTA
AAAGCAGAGCAGCTCTTCCCCACCTCCTTCGAAATGGACATCCCACCCAT
GGGGCACGTATTGGGTTTGCGCCTCCCCCTCCCTTCTTCCTCCTCCGCCA
CCAATCACCATGACACCCCTCATTCCTCTGATGATACCGAACTCGACCTC
TCTCTTCTCGTGGACGGCAAAAAAGAGTCAGATCTTTTACATCCCAAAGA
GCTGCAGCTGGCACTAGAAATGAGCAACATTGAGGCACGTCTCGCCTTTG
TTGGTGGACGATTAGCCCTCCGCCGAAACCTCCGCTCACTTCCACGTCCC
GCGAGCATTGAGCAGGCGGTGTTGCGTGAAGAGGGTGGAGCACCTTCTTT
GCCCCCGCATGTACAGGCCTCTATAAGTCATAAGAAGGATTTGGCCGTAT
GCCTCTTGAGGGGGGTGAGGGAGGAGGAGGAGGGAGAGAAGATTGCTTCC
TCTCACATCGGGGTGGATGTGGAGGTGTGTGAGCCGCGGACAAGAACTAG
TAGTATCGCCACGCGTGTGCTGACATTGAAAGAGAGGAATGGTTTGGGGG
CATTGAAATCTGTGGGAATAAGCGCTGAGAGTGAGATTTTGTTGAGGTTT
TCCTTCAAGGAAAGTGTGTACAAAGCGATACACCCTTTTGTCCGCCGCTA
CGTGGCGTTTCACGAGGCGGAGGTCACGCCACGGGTTGATGGGACGTGTG
CGATTGTGTTGTTGTTGACGGGCGGAGAGGAGGAGGAGGGTGGATTTGAA
GTGAAGGGGGAGTGGAGGAGGGTGGAAGGGGGAAGGTTCTTTTTGACGGC
GGTGGCGGTGACGAAGGTGAGGGAGGGGAGGGTGGGTTTGGTGCACTTAA
AGTTCTGAATGACACCCGTCGTCCTGCGACCTCCTGCCTCCCTAGTCGTT
ATGGTCCTCTATTCAGTGGTCGCCGCCGGCAGGACGTGGTCGTACCACCA
AGCTTCATGCGCCGTATTCTCCAGTAGGAGAGCACTCCAGACAGCCGCCT
TCATCTGTGGCACCCGCAGCGCACCATCATCGGTCCGACGACGGGAGCAA
CAACCATGGCATGCGTCTCTCCCCTTCTCTTCTTCCTCCCACTCCTCCTC
CTCCTCCATTCCACTACGATCGACCAGCACGAGCACCATCCAGTCAGCAG
CCATCCTAAAAGCAGAGCAGCTCTTCCCCACCTCCTTCGAAATGGACATC
CCACCCATGGGGCACGTATTGGGTTTGCGCCTCCCCCTCCCTTCTTCCTC
CTCCGCCACCAATCACCATGACACCCCTCATTCCTCTGATGATACCGAAC
TCGACCTCTCTCTTCTCGTGGACGGCAAAAAAGAGTCAGATCTTTTACAT
CCCAAAGAGCTGCAGCTGGCACTAGAAATGAGCAACATTGAGGCACGTCT
CGCCTTTGTTGGTGGACGATTAGCCCTCCGCCGAAACCTCCGCTCACTTC
CACGTCCCGCGAGCATTGAGCAGGCGGTGTTGCGTGAAGAGGGTGGAGCA
CCTTCTTTGCCCCCGCATGTACAGGCCTCTATAAGTCATAAGAAGGATTT
GGCCGTATGCCTCTTGAGGGGGGTGAGGGAGGAGGAGGAGGGAGAGAAGA
TTGCTTCCTCTCACATCGGGGTGGATGTGGAGGTGTGTGAGCCGCGGACA
AGAACTAGTAGTATCGCCACGCGTGTGCTGACATTGAAAGAGAGGAATGG
TTTGGGGGCATTGAAATCTGTGGGAATAAGCGCTGAGAGTGAGATTTTGT
TGAGGTTTTCCTTCAAGGAAAGTGTGTACAAAGCGATACACCCTTTTGTC
CGCCGCTACGTGGCGTTTCACGAGGCGGAGGTCACGCCACGGGTTGATGG
GACGTGTGCGATTGTGTTGTTGTTGACGGGCGGAGAGGAGGAGGAGGGTG
GATTTGAAGTGAAGGGGGAGTGGAGGAGGGTGGAAGGGGGAAGGTTCTTT
TTGACGGCGGTGGCGGTGACGAAGGTGAGGGAGGGGAGGGTGGGTTTGGT
GCACTTAAAGTTCTGAATGACACCCGTCGTCCTGCGACCTCCTGCCTCCC
TAGTCGTTATGGTCCTCTATTCAGTGGTCGCCGCCGGCAGGACGTGGTCG
TACCACCAAGCTTCATGCGCCGTATTCTCCAGTAGGAGAGCACTCCAGAC
AGCCGCCTTCATCTGTGGCACCCGCAGCGCACCATCATCGGTCCGACGAC
GGGAGCAACAACCATGGCATGCGTCTCTCCCCTTCTCTTCTTCCTCCCAC
TCCTCCTCCTCCTCCATTCCACTACGATCGACCAGCACGAGCACCATCCA
GTCAGCAGCCATCCTAAAAGCAGAGCAGCTCTTCCCCACCTCCTTCGAAA
TGGACATCCCACCCATGGGGCACGTATTGGGTTTGCGCCTCCCCCTCCCT
TCTTCCTCCTCCGCCACCAATCACCATGACACCCCTCATTCCTCTGATGA
TACCGAACTCGACCTCTCTCTTCTCGTGGACGGCAAAAAAGAGTCAGATC
TTTTACATCCCAAAGAGCTGCAGCTGGCACTAGAAATGAGCAACATTGAG
GCACGTCTCGCCTTTGTTGGTGGACGATTAGCCCTCCGCCGAAACCTCCG
CTCACTTCCACGTCCCGCGAGCATTGAGCAGGCGGTGTTGCGTGAAGAGG
GTGGAGCACCTTCTTTGCCCCCGCATGTACAGGCCTCTATAAGTCATAAG
AAGGATTTGGCCGTATGCCTCTTGAGGGGGGTGAGGGAGGAGGAGGAGGG
AGAGAAGATTGCTTCCTCTCACATCGGGGTGGATGTGGAGGTGTGTGAGC
CGCGGACAAGAACTAGTAGTATCGCCACGCGTGTGCTGACATTGAAAGAG
AGGAATGGTTTGGGGGCATTGAAATCTGTGGGAATAAGCGCTGAGAGTGA
GATTTTGTTGAGGTTTTCCTTCAAGGAAAGTGTGTACAAAGCGATACACC
CTTTTGTCCGCCGCTACGTGGCGTTTCACGAGGCGGAGGTCACGCCACGG
GTTGATGGGACGTGTGCGATTGTGTTGTTGTTGACGGGCGGAGAGGAGGA
GGAGGGTGGATTTGAAGTGAAGGGGGAGTGGAGGAGGGTGGAAGGGGGAA
GGTTCTTTTTGACGGCGGTGGCGGTGACGAAGGTGAGGGAGGGGAGGGTG
GGTTTGGTGCACTTAAAGTTCTGA

Synonyms

Publications